RNA id: XM_021617439.2


Basic Information

Item Value
RNA id XM_021617439.2
length 2999
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110533330
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 10760682 ~ 10849833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGCACTGGGAGCCAAGATGGCGTCGCTGTGAACCAAGATGGCGTCTGACAAACATAGAGAGACCCTTGCAGGCAGCAGTGGAGCACAGGGAGCCAAGATGGTGTCGCTGTAAGAGGgagtgactgacagacagagagagaaccttGCAGGGAGCACTGGGAGCCAAGATGGCATCGCTGTGAGAGGgagtgactgacagacagagagagaaccttGCAGGGAGCACTGGGAGCCAAGATGGCGTCGCTGTGAGAGGGAGTGactgacagatagagagagaacctTGCAGGGAGCACTGGGAGCCAAGATGGCATCGCTGTAAGAGGGAGTGACTGACAGAGAACCTTGCAGGGAGCACTGGGAGCCAAGATGGCATCGCTGTGAGAgggagtgactgacagagagagaccctTGCAGGAAACAGTGGATCACAGGGAGCCAAGATGGCGTCGCTGTGAGAGGGAGTGACTAACAGAGAGAGACCCTTGCAGGCAGCAGTGGAGCACAGGGTGCCAAGGTGGCATCATTGTGAGAGGgagtgactgacagacagagagaggccctTGCAGGCAGCAGTGGAGCACCCGTTGTGGTTTGGCGGCAAAGTCACACGTCGAGGCGAAACCGGGTGATCCTAGACGACAAGAGGAAACTGACCCTGTTATGCAAGCGGACTGAGGCAAAATAACGACCTGCTCACACACCCTGCTCTGCCTGCACTGATTTATGGCGCATCTGGCAATGGAGAGGAAAATACGCAGCTATAATCTTTCTGTTGGTTTTATAGTTCGTTTTCTCACACTTTAATCTGAGCCCCATCGTGCCTGACATCCAACGCCACACCTTCCAACGTCTCGAAAGGGACAGGCATTTCCATCTATCACATTGATACGAACGGTGAGGTTTCTGCCTCTTTTTCACGTTCTTATTTCTGTAAAGGGTCGAATCATGACGAACAGCGTGCAGCTCGCGCCGACCCTGTGCTGAAGCGATGTTTCAGGACCATGGATACCTGTTTCTCTTTTTCTGgtttacaaaataaaaacacaaatggATGAAGAAATCGACACCCGCAAAATCAACAACAGCTTCCTCCGGGACCACAACTATGCAACTGAAGCTGACATCATATCCACGGTTGAGTTCAACTCGACTGGAGAGCTGCTGGCGACCGGGgacaagggagggagagtagtggtGTTTCAGAGAGAACAGGAGAGTAAGAACCAGCCCCACAGGAGAGGGGAGTATAATGTTTACAGCACCTTCCAGAGCCACGAGCCTGAGTTTGACTACCTGAAGAGCCTGGAGATCGAGGAGAAGATCAACAAGATACGATGGCTGCCTCAACAGAACGCTGCCtacttcctcctctccaccaatGATAAAACAGTGAAGCTGTGGAAGGTCAGTGAGCGGGACAAGAGACCAGAGGGCTACAACCTGAAGGACGAGGAAGGGAGGATCCGAGACCCCACCACCATCACCGCCCTGCGGgtaCCAGTGCTGCAGCCCATGGACCTGATGGTGGAAGCCACTCCCAGGCGAGTATTCTCCAATGCCCACACGTACCACATCAACTCCATCTCTGTGAACAGTGACTACGAGACCTACATGTCCACAGATGACCTGAGAATTAACCTGTGGAACCTGGAGATCACCAACCGAAGTTTCAACATCGTGGACATCAAGCCGGCTAACATGGAGATGCTGACGGAGGTGATCACAGCAGCAGAGTTCCAACCCAGCCAGTGTAACACCTTCGTTTACAGCAGCAGCAAGGGTTCCATCCGGCTGTGTGACATGAGGGCCTCAGCACTGTGTGACAACCACTCCAAATTGTTCGAGGAGCCAGAGGACCCCAGTAACCGCTCCTTCTTCTCCGAGATCATATCGTCCATCTCAGACGTGAAGTTCAGCCACAGCGGCCGCTACCTGATGACACGGGACTACCTCACGGTCAAGGTGTGGGACCTCAACATGGAGAGCAAACCTCTGGAGACCTACCAGGTCCACGACTACCTGAGGAGTAAGCTGTGCTCCCTGTATGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTCTGGAACGGGTCTGACAGTGTGATCATGACCGGCTCGTACAACAACTTCTTCCGCATGTTCGACCGCAACACCAAGCGTGACGTGACCCTGGAGGCGTCGAGGGAGAACAGCAAGCCCCGGGCCATCCTGAAGCCCAGGAAAGTGTGTGTAGGGGGCAAGAGACGCAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAGCAAGAAGATCCTGCACAGCGCCTGGCACCCCTCTGAGAACATCATCGCTGTGGCCGCCACCAACAACCTCTACATATTCCAAGACAAGGTCAactaatggatggatggatgggtggagagCAACACAGACCAGCATAGCGCCCCCTGACTGGCTGATCACACTCACCTGGGAGAGGGCCGCAAAGGCTGGGAATCTCTGGCCGCACTGCAACTTGTGAAGGGACACTGACAGCTTTGCAGTTCTCTTCTTTCGCTCCATCTCAAGAGACTTGCACCCATGTTGTAAATCTAGGGTTGCCCTCTGTTGCATCCAGAACACTGAAGAACGATGGctccattttaaaatgttcacccTTCTTAAGTTGTTGCTGTAGTTTAAGGTTATGCACATAAATGCAGGGACAATACTTTTTTGTTCCTTAGAAGCTTTGCATTGGGGAGATGAACTGAAGAGACTGGCTCAACAAACTCATAACCTTTACATCCCTGATGACATGCCTAGACACTACTGAGATGGTGTGCTCTTGACGCCCTTTgacctctctctgccccttccgtttcatttatttttttctcttcatGAAGGTTTTAAAACATGCAGAGGAAGTGATGTTACCAGGTAGTATTGATTAAAACAATGTAGCAAGCTTTTTGTTCCAATTTTTTAAAGAACTTTACAAAATGtcgaataaaaaaaaataataataggta

Function

GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU972390 lncRNA downstream 14666 10745146 ~ 10746016 (-) True G853138
TU972298 lncRNA downstream 88670 10671316 ~ 10672012 (-) True G853086
TU972297 lncRNA downstream 91476 10669007 ~ 10669206 (-) True G853085
TU972295 lncRNA downstream 93662 10666327 ~ 10667020 (-) True G853083
TU972076 lncRNA downstream 146552 10613872 ~ 10614130 (-) True G852890
TU972435 lncRNA upstream 14118 10863951 ~ 10864293 (-) True G853179
TU972462 lncRNA upstream 54778 10904611 ~ 10905031 (-) True G853202
TU972486 lncRNA upstream 113443 10963276 ~ 10963581 (-) True G853222
TU972509 lncRNA upstream 147466 10997299 ~ 10997679 (-) True G853237
TU972510 lncRNA upstream 150783 11000616 ~ 11000984 (-) True G853238
XR_005053571.1 mRNA downstream 51606 10707542 ~ 10709076 (-) False LOC118966706
XR_005053572.1 mRNA downstream 51606 10708029 ~ 10709076 (-) False LOC118966706
XR_005053570.1 mRNA downstream 51606 10708381 ~ 10709076 (-) True LOC118966706
XR_005034341.1 mRNA downstream 211381 10547573 ~ 10549301 (-) False LOC118936914
XM_021617448.2 mRNA upstream 138956 10988789 ~ 10993793 (-) True LOC110533336
XM_021617449.2 mRNA upstream 176254 11026087 ~ 11029511 (-) False bod1
XM_036989695.1 mRNA upstream 176254 11026087 ~ 11029511 (-) False bod1
XR_005034347.1 mRNA upstream 240188 11090021 ~ 11091274 (-) True LOC118936915
XM_021617454.2 mRNA upstream 617548 11467381 ~ 11474701 (-) True LOC110533343
TU971979 other downstream 298032 10462256 ~ 10462650 (-) True G852802
TU969585 other downstream 2328641 8431531 ~ 8432041 (-) True G850763
TU969056 other downstream 3014058 7741302 ~ 7746624 (-) True G850323
TU968513 other downstream 3317065 7440903 ~ 7443617 (-) False G849864
TU972516 other upstream 155276 11005109 ~ 11005658 (-) True G853244
TU973046 other upstream 592419 11442252 ~ 11442590 (-) True G853740
TU973334 other upstream 731853 11581686 ~ 11583188 (-) True LOC110533345
TU973362 other upstream 765423 11615256 ~ 11620922 (-) True G854016
TU973775 other upstream 935287 11785120 ~ 11785853 (-) True G854402

Expression Profile

XM_021617439.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_021617439.2 Expression in each Bioproject

Bar chart with 17 bars.
XM_021617439.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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