RNA id: TCONS_00003730


Basic Information

Item Value
RNA id TCONS_00003730
length 535
lncRNA type retained_intron
GC content 0.50
exon number 2
gene id XLOC_001887
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7029664 ~ 7233955 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTTGTGGGAAATGTCTGAGGGATGATACTAGTATGAGCCGGACATTAAACAGCGCTTTATTTTCTTACTTTTATCGGCAAGCTTTATACTTTTAACGGGGCTTTGGAGTTCGCGTGTCTCTGTTGGAATGTTAATGAAAACGCTGTGTGAGAGTTGGAGGTTTGCGCTCTGGACGCGTACGTGAAGTCTGCAGCAGCGATGCGGGGCTGAAGGACGTGCTGTCGGACTGGGACTCAGACATGGATGTTGTGGAATGTCTTAAGGACACAGATGTTCTCCACAATGGCAGCCGGAGTGATCAGGAAGCTGCCCGACGTCTGGCCAGACGGCTCTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCCAAACATCTGGGCAAGAAGTGAGTGCATTTAGCCACAAATTCAGTTCTGAGTTTCCCGCTTCTCAATGGTAATCGCACCATGCATGCACACTAAGGGCACACTTTGCTATCTGAACCGTGACCAGActcgtttcccagatcgtttgagaagtctGAGTGCTCTGAA

Function

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8195 Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3).

Ensembl:

ensembl_id ENSDART00000163673

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005823 lncRNA upstream 327973 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 398943 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 438964 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 454742 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00003709 lncRNA upstream 733463 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005678 lncRNA downstream 705957 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 740652 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 767855 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 875763 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005679 lncRNA downstream 885271 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00003728 mRNA upstream 139332 6907715 ~ 6944407 (+) True XLOC_001886
TCONS_00003723 mRNA upstream 178165 6884137 ~ 6905574 (+) False XLOC_001885
TCONS_00003724 mRNA upstream 178165 6884152 ~ 6905574 (+) False XLOC_001885
TCONS_00003722 mRNA upstream 178483 6884123 ~ 6905256 (+) False XLOC_001885
TCONS_00003727 mRNA upstream 178805 6884627 ~ 6904934 (+) False XLOC_001885
TCONS_00003733 mRNA downstream 79414 7182168 ~ 7221801 (+) False XLOC_001887
TCONS_00003734 mRNA downstream 79669 7182423 ~ 7231381 (+) True XLOC_001887
TCONS_00003735 mRNA downstream 152941 7255695 ~ 7264766 (+) False XLOC_001888
TCONS_00003736 mRNA downstream 153030 7255784 ~ 7264746 (+) True XLOC_001888
TCONS_00003737 mRNA downstream 461001 7563755 ~ 7565074 (+) False XLOC_001889
TCONS_00003693 other upstream 1314127 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 1931338 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 1936157 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 2096256 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 2590381 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003739 other downstream 470562 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 1240434 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1759767 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1766714 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 2243642 9346396 ~ 9348506 (+) False XLOC_001931

Expression Profile

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