Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003734 |
| length | 1125 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 8 |
| gene id | XLOC_001887 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 7029664 ~ 7233955 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032012 | regulation of ARF protein signal transduction | biological_process |
| GO:0005543 | phospholipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-8195 | Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3). |
| ensembl_id | ENSDART00000186788 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003730 | lncRNA | upstream | 79669 | 7083739 ~ 7102754 (+) | False | XLOC_001887 |
| TCONS_00005823 | lncRNA | upstream | 426657 | 6754270 ~ 6755766 (+) | True | XLOC_001884 |
| TCONS_00005822 | lncRNA | upstream | 497627 | 6684418 ~ 6684796 (+) | True | XLOC_001880 |
| TCONS_00005821 | lncRNA | upstream | 537648 | 6644397 ~ 6644775 (+) | True | XLOC_001878 |
| TCONS_00005820 | lncRNA | upstream | 553426 | 6628619 ~ 6628997 (+) | True | XLOC_001877 |
| TCONS_00005678 | lncRNA | downstream | 577330 | 7808711 ~ 7809243 (+) | True | XLOC_001897 |
| TCONS_00005824 | lncRNA | downstream | 612025 | 7843406 ~ 7849873 (+) | True | XLOC_001898 |
| TCONS_00005825 | lncRNA | downstream | 639228 | 7870609 ~ 7901888 (+) | True | XLOC_001899 |
| TCONS_00005826 | lncRNA | downstream | 747136 | 7978517 ~ 7984582 (+) | True | XLOC_001900 |
| TCONS_00005679 | lncRNA | downstream | 756644 | 7988025 ~ 7992459 (+) | True | XLOC_001901 |
| TCONS_00003732 | mRNA | upstream | 59743 | 7102461 ~ 7122680 (+) | False | XLOC_001887 |
| TCONS_00003728 | mRNA | upstream | 238016 | 6907715 ~ 6944407 (+) | True | XLOC_001886 |
| TCONS_00003727 | mRNA | upstream | 277489 | 6884627 ~ 6904934 (+) | False | XLOC_001885 |
| TCONS_00003735 | mRNA | downstream | 24314 | 7255695 ~ 7264766 (+) | False | XLOC_001888 |
| TCONS_00003736 | mRNA | downstream | 24403 | 7255784 ~ 7264746 (+) | True | XLOC_001888 |
| TCONS_00003737 | mRNA | downstream | 332374 | 7563755 ~ 7565074 (+) | False | XLOC_001889 |
| TCONS_00003738 | mRNA | downstream | 332725 | 7564106 ~ 7565071 (+) | True | XLOC_001889 |
| TCONS_00003740 | mRNA | downstream | 354547 | 7585928 ~ 7588878 (+) | True | XLOC_001891 |
| TCONS_00003693 | other | upstream | 1412811 | 5744923 ~ 5769612 (+) | False | XLOC_001866 |
| TCONS_00003679 | other | upstream | 2030022 | 5151349 ~ 5152401 (+) | True | XLOC_001855 |
| TCONS_00003675 | other | upstream | 2034841 | 5135842 ~ 5147582 (+) | True | XLOC_001854 |
| TCONS_00003668 | other | upstream | 2194940 | 4986050 ~ 4987483 (+) | True | XLOC_001850 |
| TCONS_00003658 | other | upstream | 2689065 | 4493277 ~ 4493358 (+) | True | XLOC_001842 |
| TCONS_00003739 | other | downstream | 341935 | 7573316 ~ 7578051 (+) | True | XLOC_001890 |
| TCONS_00003759 | other | downstream | 1111807 | 8343188 ~ 8343305 (+) | True | XLOC_001906 |
| TCONS_00003778 | other | downstream | 1631140 | 8862521 ~ 8868895 (+) | True | XLOC_001921 |
| TCONS_00003779 | other | downstream | 1638087 | 8869468 ~ 8880126 (+) | False | XLOC_001922 |
| TCONS_00003791 | other | downstream | 2115015 | 9346396 ~ 9348506 (+) | False | XLOC_001931 |
