RNA id: XM_021617940.2



Basic Information


Item Value
RNA id XM_021617940.2
length 3591
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110533581
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27289957 ~ 27305561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACTACACCTCAATATTTAAATTAAAATGTATATGTTTAACTTTAATTCTGGGTTAACGAGATTATATAAAAGGTGTAACAAGTGGCATCCAGCTACAAAATAAGTAAGAACATTAAACACGTTTTGGAAGGAATTTTGAACTTGTTGGGGGGGACTGGTCGTGAAATGGTTAATGGGAATGTTTGGAATGAGCTCGTTACCTTGTAACCAAGGAGAGTACCACAGAAGCCActacaaaacaaactggcagccTGGGTAGCTAGAGAAACTTAAATAAGTGTAGACAGATTTCAGGTTAATTTTGACTGTATTTCGAACATTTAATTAATGACCATATTTTGAAATGACTTTATAGTCGAGCGTTTTACACTGTAAATCACTAGCTAGCTACGCGTTCAAACCGCATGGAATAAGTGGAACCAGGTGCAGGTTGGTTGAGGCAATAATATATTTGCGATACTACTTTCACGATAGTTTTGCCTCATGTCGTGACTTCTCTGCTTGAAGTGTATATTTCATATTGCTCACAATGTCCACTGGGATTCATCATGCCACAAATCAAAGCATCAAGCCCTTCAAGTCTAGCGAAGAGTACCTGTATGCGATGAAGGAGGATTTGGCAGAATGGTTGAGAGATTTGTACGAGATCGATATTGACGTGAACAACATACTGGAGGCGCTCGAGACGGGCGCGGTCCTCTGTTCCCACGCCAATAATGTCACAAGAGTGGCGGGAGAGTTCATTCAAAAGTACGGGATGGTGCGACAGGTCCAGCTGCCAACGAACGGTGTCACGTTCGTAAATTCGGCCCAACCTGCAACTTTCCTGGCCCGGGACAACATCTCAAATTTCATCAGTTGGTGTCGAAAGCATATGGATATTAAAGATGTGCTCATGTTTGAGACAGACGACCTAGTGCTGCGGAAGAATGAGAAGAACTTTGTGCTGTGTCTGCTGGAAGTAGCCCGGCGGGCCTCTCGTTTCGGCATGGCCGCCCCCGTGTTGATCCAGTTGGAGCAAGAGATCGAGGAGGAGATCAGAGAGGAGCTGGAGTTGCCCCTGGAAGAGACCCCGCCACTAGCCAAACCCCAGCGGCGCACCTCCAACACTCAAAACCTGGATGAGATGGTCCAGTGCCTCATTAGCCGCTGCACCTGCCCCACACAGTTTCCCATGTTCAAAGTGTCTGAGGGCAAATACAGGGTGGGGGACTCCAGCACACTCATATTTGTTCGGATCCTGCGTAATCATGTGATGGTGCGAGTGGGTGGAGGTTGGGACACCCTGGAGCACTATCTGGACAAGCATGACCCCTGTCGCTGCACCTCTATCACCCATAAGCTGGCTCAGCGCCCGGGCACGCCGGTCCACGAGATCAAAGGCAGGTTGCCGGGGCGCCCAGACGGCCAGGGTCCAACCATGCCTACCATGCTGATCATGAGTCGCCACGACCAGACCCCCTTCCAGCCCGTCCTCTGGACCCCCTCCGAAGCCCCCTCCACCTATTCCCCCAGGGGCCTGAGGCCAGCCAGGACAAGGGGTTCCCTATCACCAGACACAGGGCTCAGAGCCTCTTGCTCCCCTAACAGATCGTCCCTCTCTCCTGACCCAGGCCCCCGGTTCTCCAGGGAGATGAAGACTACCTTTTCCAACAGACTGCGACAGAGTGCTTCCACACCCACTCTCCAGCACCACCAGTCTGGGCGTAATGATGACGCAGCACTCAACTCTTCCATGAGGACAGGCAGAGAGGCCACACGCTCGTCCCATGCCCCCCGCTTCACCAGCAGCCTGCCTCGGTACAGCCAACACTCCTCCACACCTCAGCCCCAGCCCAAGACTAAGCCCCAGGCTCAGAGGCCTAGAACCCCCCTGGTCTTCCACAGGTCCCCTGGGCAGCAATCCTCCCTGCTCCAGCCCAGCCCAGAAAATGGGCTTACTCAAACCTGGACTAAGTCTCAGTTTGCCTCTAAGCTCAGGCAGAGCTCCATGTTGGGTGGCAACAGCACAGAACCCCCACCCGCCAGATATACCCCTGTCTGCCCCAGACAACCCACCATCCCTATCCAGCAACCTGAAAACAATGATACTCTTCAAAAGAGCCCCGATTTAATTCGCACCTTCTGTCCAGCCAAAACATTCTGGGAAGAATCATCTGGGGAATGCCAAGTCAGGCCCTTCACACCCATTGGAGGAAATCTGAGGGATCCAAATAAGACACCCACCCCTTATGACATCACAACCAACCCTTCACACAGCGACTCCAACCATGAGAGAATGCAGGGCCTGACAAGACAGACTGCATTTGGCTTTCCTGTCAATGACAAGGCTTCTCACAAAAGCACTGTGGTGAGCCTTGAAGAGCCTGAGCATCCAGAACTATGTGGCAAAGTCTTTGTGGCAGGAGACAGAGCGATAGACAATGCTTACCTGTTTACCCCTCCCCCCATCAGCCCAGCCCAGGAGGCCAGTCTGTACCAGAGTCTGGAACACGAGATCCTGTCCAACCTCCAGCAGCTCAGCGTCGACTCAGATGACAGAAAACGCAAGCAAAACGGTCAATACCAACCATCTCAGAATATCGCTGAGAACGATTATGGTGGATTCAGTACAGTTCTAGCTGGGTTCGAACCATCTCCACATACCTCAGCCTCTTATGCCACACATCCAGTTGAGGCCAGCTTTGATGCAGTCATCACTGAGCTCTCCAAAGGGAATAGGCTGCTGGAAAAGGTGTGTGTGGAGAGCTGGGTGAAAACACTCTCTGGTAGCCCTAGAGCTAGGGAGACTTGCAGCAACACAGAGGTGGTGAACTCCAGCTTAAACCTCAAAGTGGCCAAAGCCTGTGTAACCAGCTCCTGGTCCTCTATGGGCTCCGGTGTCGAGTCCAAAGAGCTGCCCGCTGATTCTACTTTCTCACCGGACTCTGGGAATGGAGTTAGCATTAGCATAAGGCGCAGGGTGACAGACGCCAATTCACTTGTAGTGAACTCCAGAGCCACTACCATAACAGGTCCTGATAGCCTGTTGAAACCAAGGAATGGGTCTTTCAGGCAGAAGAGAACCTTGAAGAAACCAGAGAGTGTGCCCTCCATCTACAAGCTGAAGCTCCGGCCAAGGCACGACTACAGACCAGGCAAGAAGCCCTCACGAATCCCCACCCCAATCTCCTACAAAGGGGGTCAACCTGCGGGGGACCCTGGAGGGTCCAGAAGGGGGACACACACCTAGACGAGCATCACACACCTCccccaggcaggcagacacagggTTCCACAGAAATGTATCAGAGCTACAGGCAGCATGGCTACAAAGCCACAGTGAGGCTAAGGCAGTGGCAAATGCTTCAACCGGTGACAGTAGAGGACCCAGAGCAAGAGTCCCGAGTCTAACCCCTTACGTTTCGCTTCCATAGCAAATTGAGGTACTCAAGGGAAAAATACTCTATTTGGATGGTAATGTACAGGTACTGTACTACATTTATTTTTGGTTAAAGCTGAATTAATGCATCAGACCACACAAAGTAGTGGTGAAAGATTATCTGCATTCAGTGGAGCGTTCACCTCAACAAATAAAGGTTTAACTATAA

Function


GO: NA

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU994103 lncRNA downstream 116435 27173144 ~ 27173522 (-) True G873191
TU994104 lncRNA downstream 121167 27168038 ~ 27168790 (-) True G873192
TU994126 lncRNA downstream 125407 27164158 ~ 27164550 (-) False G873209
TU994132 lncRNA downstream 125407 27164223 ~ 27164550 (-) True G873209
TU994122 lncRNA downstream 127317 27162347 ~ 27162640 (-) True G873208
TU994208 lncRNA upstream 12971 27318532 ~ 27376257 (-) True G873281
TU994227 lncRNA upstream 29283 27334844 ~ 27336456 (-) True G873297
TU994279 lncRNA upstream 103209 27408770 ~ 27409200 (-) True G873346
TU994347 lncRNA upstream 191902 27497463 ~ 27499392 (-) True G873409
TU994346 lncRNA upstream 194051 27499612 ~ 27502735 (-) True LOC110534878
XM_021617930.2 mRNA downstream 111270 27174930 ~ 27178687 (-) True pex12
XR_002474984.2 mRNA downstream 195255 27092272 ~ 27094702 (-) False LOC110533573
XR_005053607.1 mRNA downstream 195255 27092272 ~ 27094702 (-) True LOC110533573
XM_021617915.2 mRNA downstream 208217 27058163 ~ 27081740 (-) True LOC110533571
XM_021617911.2 mRNA downstream 378289 26890009 ~ 26911668 (-) False LOC110533569
XM_021617942.2 mRNA upstream 310 27305871 ~ 27311822 (-) True LOC110533583
XM_036989994.1 mRNA upstream 25028 27330589 ~ 27355997 (-) False LOC110533580
XM_021617934.2 mRNA upstream 25028 27330589 ~ 27366153 (-) False LOC110533580
XM_036989985.1 mRNA upstream 25028 27330589 ~ 27366153 (-) False LOC110533580
XM_036989989.1 mRNA upstream 25028 27330589 ~ 27366153 (-) False LOC110533580
TU994124 other downstream 125407 27162900 ~ 27164550 (-) False G873209
TU993955 other downstream 378331 26890025 ~ 26911626 (-) False LOC110533569
TU993956 other downstream 383005 26890025 ~ 26906952 (-) True LOC110533569
TU987118 other downstream 5466336 21819111 ~ 21823621 (-) True G866654
TU986426 other downstream 5530105 21759124 ~ 21759852 (-) True G865988
TU994221 other upstream 46832 27352393 ~ 27353246 (-) True LOC110533580
TU994733 other upstream 277368 27582929 ~ 27584262 (-) True G873784
TU995737 other upstream 1234668 28540229 ~ 28543267 (-) True G874706
TU996256 other upstream 1635679 28941240 ~ 28985070 (-) True G875194
TU998135 other upstream 2609806 29915367 ~ 29916505 (-) True LOC110533621

Expression Profile


XM_021617940.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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XM_021617940.2 Expression in each Bioproject

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XM_021617940.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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