RNA id: XM_021617967.2


Basic Information

Item Value
RNA id XM_021617967.2
length 2887
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110533598
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28162794 ~ 28171287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAAGACcccgtacagtaggtggcggccaTACACCATAGGTGTAGCCTGCCCTAAAACTTTAAAGAAGAAGTAGTGGCCTCATAACAAAGCCTCTTGGATTTTTGTATTTAGCTTGATTGCTAACAAATGAGGTCTAGAAGTTCAAGTCGAGTAAGCTTTGCCATATGACATAGCAATGGCATAGGCTATATAAATGTTAGGGATGTTTCTGTAGCTTGTCATTTTAGTTTTTAGCTAAAATGTATGTTGCTGACTACACCAAGTGGCTCAAAcattggctggctagctaactctTAACGAAATGTTCATATTTTAAGAGCTATTCGACCATTTACCTATACTGTTAATCTGACTCGGCTCTGATTCTTCAATTTGAACACATTTAGCTGAGTTTATCAAGACGCAATTCAGCATCCTGGTCTACCcctctccagctcctcctctcctttcttgtCCTGGTCCTGTGCACTATGACCATGCGTGTGGATGCAAAAGTTGTTATGCTTGGTAAAGAGAGTGTGGGCAAGACCAGCCTTGTGGAGAGATATGTTCACCACCGGTTTCTTGTCGGCCCCTACCAGAACACTATTGGGGCTGCATTTGTTGCCAAACCAATCCAGGTTGGAGACAAGGTGGTTACACTGGGAATATGGGACACGGCTGGATCAGAGCGCTACGAGGCTATGAGTAGAATCTACTACAGAGGAGCAAGGGCTGCCATTGTCTGCTATGATTTGACGGACACCAGCAGTTTCCAGCGAGCTAGATTCTGGgtgaaggagctgcaaaactgTGACAAGCACTGCAAGATATACCTGTGTGGCACAAAGATTGACCTGATTGAGAGTGACCGGGGCCTGCGGCAAGTAGACTACCATGACGTTCAGGACTTTGCTGACGAGATTGGGGCTAAACATTTTGAAACATCCAGTAAAACAGGAAACAACGTGGATGAGCTGTTCCAAAAGGTTGCAGAGGACTACAACAGCATCTCCTTTCAATTATTGACCGAAGAGACCGGTGTTGACTTGGGTCAGAAGAAGGactcttatttctcttcctgcTGCCACAGTTAAGCCTTTACTGGATGGACAGCGATCACTTGCTGTAAAACCAACCTGGAAATGCAGGATGGATGCTACACATCCCACCTGGAGCCTGTCCATTtaaaacagagaaagaaagagaggagtccAAACAGTGTTGCTGTTTTTTTTGGTAGCTTTTTTCAGTTGTCCCATAGACGATTACATGCTCACTGCATTTAAAGGAGTCATCACAATAGTTTGATGCGACCCCTCTCCCATGACAAAGGACCTGCCAAGAGCGATATCTGAATGAAGCATACGAGGAACTAGCACCTCAACCCCACTAATTATTTTTTGATTTCCTCAGTGTCTATCAACCCACCTTATATAAATGAATTATGCTGATGACACAAATGGCCTTCATCACTCAGTCAAATGCCTTGAGTGAGTGTGCTTCTTAATGACTTGATTTGAATAAGCATTCTGTGAACACTGTTTTCATTGTCTACTCTTCATGGTGAAATGTACTTGCCAAACTATGTACCTGAACATTTATTGTCATCTAATGTGTTTTTCTTTGCGTCATAAATTCTGATACAGTTGAAAGTATGGAATGCAACTAGAAAGATTGCACCAACACAGGAAAAAGCTTGTGGGTAAATGTAATATGATAGTTATGTCGCCATGGCTAAAAGTACAAGATATAGCTTATGTGGTCCTCTGTAagtcagttggtagagcatggccctTACACCGCCAGGGTTGAGGGTTTGATTCCCTgggccacccatatgtaaaatatatgaacgccttactgtaagtcactttggataaaactgtctgctaaatggcttatttatatatatatatatatatatatactatatatatatatatatactatatatatatatatatatatactgtatatacactcaaAGAAACCCTACATACAGCTATGTTAACTAATGTTCAATGTAATCTCCAAGTCACTATTTCAATGTTACGGACGCCTCATCACCGTGGCTGACCATTGTCGTTACTCCACACAAGTTGCAATTTTCTGTGAATGTGTTGTTACTGTTTACACTTTTCAAGAAACCTTTGACCTTTTGAGACAGTCTAGCCAATGGCAGATTTTTACTTGATTTTACCAATGTGTGTGAAAATGTAGCTTAGTTAGAGCTATTATTGCATTTGAGTACAAATATAATTGAAAGAGAATTCTGAAACCTCTGAGGGTTTATCTCAGTCCCACTGAAGTTGTGCCTGTAGGGTACTAGAAGTAAGCAGCATCAATGGGCCCACAGGCATGAATCACATATCCATCATTAGCTGTGTATAGAAGGCTCCATTCAAGTGTACATACACTTCATCAAACATGTtattgtttacacacacacacacagcaccttctAGTGGTGCCACTCCCCAGGATGCAGAACTGGTGCCTGAGAAAGAGGACTAGTTcacacacacagcaccttctAGTGGTGCCACTCCCCAGGACGCAGACCTGGTGCCTGAGAAAGAGGACTAGTTcacacacacagcaccttctAGTGGTGCCACTCCCCAGGACGCAGACCTGGTGCCTGAGAAAGAGGACTAGTTCACATTCACAGCTCATTTGTATGAATGGTTTACAGGACTGTTATTGCAAGGGGCACAGGCACAAAGCAAGAGGTTGTTTGCAGTCCCACGTCTATTTGATGCCTTGAAGATATTATAACATGTATATAGTCCCAACACCATTACAGGTCCACAGAGAGTCAGTCGGCTGATATGATCATTCATTGTGTGGACTGTTTTGTAGCATGTTGTAAATTGAAAAAATAAAGACTAGATTTCTGCAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU995096 lncRNA upstream 19069 28143509 ~ 28143725 (+) True G874135
TU995094 lncRNA upstream 21058 28141485 ~ 28141736 (+) True G874133
TU995088 lncRNA upstream 27775 28134813 ~ 28135019 (+) True G874127
TU995054 lncRNA upstream 78507 28084033 ~ 28084287 (+) True G874096
TU994706 lncRNA upstream 82909 28055071 ~ 28079885 (+) True G873759
TU995271 lncRNA downstream 73975 28245262 ~ 28245462 (+) True G874286
TU995306 lncRNA downstream 148502 28319789 ~ 28321098 (+) True LOC110534879
TU995415 lncRNA downstream 270610 28441897 ~ 28442894 (+) True G874406
TU995441 lncRNA downstream 352104 28523391 ~ 28524965 (+) True G874431
TU995388 lncRNA downstream 376310 28547597 ~ 28551650 (+) True G874379
XR_005034350.1 mRNA upstream 18091 28143313 ~ 28144703 (+) True LOC118936920
XM_021617958.2 mRNA upstream 158779 27991680 ~ 28004015 (+) False LOC110533593
XM_036990004.1 mRNA upstream 158779 27991680 ~ 28004015 (+) False LOC110533593
XM_036990002.1 mRNA upstream 158779 27991788 ~ 28004015 (+) False LOC110533593
XM_036990003.1 mRNA upstream 158779 27991788 ~ 28004015 (+) True LOC110533593
XM_036990011.1 mRNA downstream 131627 28302914 ~ 28321189 (+) False LOC110534879
XM_036990009.1 mRNA downstream 131628 28302915 ~ 28321189 (+) False LOC110534879
XM_036990010.1 mRNA downstream 131628 28302915 ~ 28321189 (+) False LOC110534879
XM_021617975.2 mRNA downstream 208142 28379429 ~ 28388942 (+) False LOC110533601
XM_021617976.2 mRNA downstream 208142 28379429 ~ 28388942 (+) False LOC110533601
TU995068 other upstream 45434 28089906 ~ 28117360 (+) True G874108
TU992619 other upstream 665922 27492733 ~ 27496872 (+) False ppm1e
TU992620 other upstream 665922 27492733 ~ 27496872 (+) False ppm1e
TU992621 other upstream 665922 27492733 ~ 27496872 (+) True ppm1e
TU992474 other upstream 894000 27261756 ~ 27268794 (+) True ap2b1
TU995448 other downstream 385253 28556540 ~ 28557644 (+) True G874438
TU995386 other downstream 406165 28577452 ~ 28584415 (+) True G874378
TU995526 other downstream 556487 28727774 ~ 28738905 (+) True G874510
TU995929 other downstream 658485 28829772 ~ 28830164 (+) True G874876
TU996837 other downstream 1375352 29546639 ~ 29547275 (+) True G875756

Expression Profile