RNA id: XM_036990016.1



Basic Information


Item Value
RNA id XM_036990016.1
length 1271
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110533600
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28361976 ~ 28379362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTAGAGTAAGCAAACATGCAAGTAAACAAAATGATAAAGGAGAATGGTGACCTGTTTTCTGATGCCCTGTGCAAAATCTGCAGTGCTGTCCTGAATTCTGACTCCCAGAAACTTGCACATTATCAGAGCAAAAAGCATGCCAACAAAGTGAGACGCTACATGAGCATCCACAAAGAAGAGGAGCCCACCATCAAAAGGTTCAAGTCGCCTTCGGGAGACAGTGCCAGCAGTAATGGCGAGACGGACCGCTCCAAAGCCTGTCATATATGTAACATGACATTCTCCTCTCCGGTGGTGGCTGAGTCCCACTACCAGGGCAAGGTGCACACCAAGAACCTGAGACTGAAGACCTTTGGCAACCAGACCCCAGTAGCACTACCTCAGGCCGTGGCCCCAGTGgtgaaaaagaagaagaagaagaaggaggctCAGTCAGAGGAGGCTAGCAACGTGGCATCGTCAGCCCCGGCCGAGGACGACCAGGGCAACTTCTGTTCCATCTGCCATGCCTCGTTCAACAACCCCCTCATGGCCAAGCAGCACTACGAAGGCAAGAAGCATAAAAAACAGCTGACCCAGCAGAAGCTTATGGAGACCTATGGGCCATCCACTGCACCAGCTTCCACAGTAAAGGGCTACCCATGTACTGTATGCAACATCGAACTGAACTCTGTGGAACAGTATCAGGCACACATCAGTGGCTCCAAACATAAGAACcatGTCAGAGGCAAGAAAGCGAGCAGCCCGATGTTCATCGGCCCATCGGAAAACAAGTACACAGCAGAAAACCAGCAGTCAGAGTACCAGTATACACCTGAATTCGAACCAGTACAGGAGGACTGGGGTGCTTTCAGCCAAGATTACGAGTGACGAGCCTCCCAGTACCCCCCACCAACACCACAGTTCCCTCAGCTAGGGCCAGAAGGATCACCTGACCAGGAAAAGCTCTAGGTCCTTGTTACAATACAGGTTACAACTAGGatccagagtttttttttttttttttcttcttcccttGTTCATGTCAGGAAAAATCCCTGGACAGAGGGCAGCCTATATGTGGTGTTCTTTCTGTGGTGTTGTATCTGCCTCATGGATGAATCTCAACTCCAGCTCTATATCATTCTGTCTACTCCATGTCTAAATCCCAGTACATGttcactaccggtcaaaagttttagaacacctactcattcaaggggttttctttatttttactctttctacattgtagaataatactgaagacatcaaaactatgaaataacac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU995612 lncRNA downstream 55955 28303011 ~ 28306021 (-) True G874592
TU995263 lncRNA downstream 126273 28235407 ~ 28235703 (-) True G874278
TU995262 lncRNA downstream 126781 28234956 ~ 28235195 (-) True G874277
TU995250 lncRNA downstream 138390 28223379 ~ 28223586 (-) True G874265
TU995222 lncRNA downstream 190692 28169421 ~ 28171284 (-) True G874237
TU995662 lncRNA upstream 8992 28388354 ~ 28399671 (-) True LOC110533602
TU995660 lncRNA upstream 17357 28396719 ~ 28399355 (-) True G874635
TU995740 lncRNA upstream 164333 28543695 ~ 28544757 (-) False G874707
TU995739 lncRNA upstream 164717 28544079 ~ 28545862 (-) False G874707
TU995738 lncRNA upstream 165907 28545269 ~ 28546427 (-) True G874707
XM_036990007.1 mRNA downstream 144847 28171634 ~ 28217129 (-) True LOC110533599
XM_021617971.2 mRNA downstream 147631 28171634 ~ 28214345 (-) False LOC110533599
XM_021617970.2 mRNA downstream 147632 28171634 ~ 28214344 (-) False LOC110533599
XM_036990008.1 mRNA downstream 147632 28171634 ~ 28214344 (-) False LOC110533599
XM_036990005.1 mRNA downstream 209689 28149090 ~ 28152287 (-) True LOC110533597
XR_002474999.2 mRNA upstream 9727 28389089 ~ 28393110 (-) False LOC110533602
XM_021617993.2 mRNA upstream 170101 28549463 ~ 28560015 (-) True LOC110533605
XM_021617994.2 mRNA upstream 200071 28579433 ~ 28624349 (-) True LOC110533606
XM_036990022.1 mRNA upstream 264207 28643569 ~ 28648218 (-) True arl10
XM_021618005.2 mRNA upstream 352441 28731803 ~ 28755968 (-) False LOC110533612
TU994733 other downstream 777714 27582929 ~ 27584262 (-) True G873784
TU994221 other downstream 1008730 27352393 ~ 27353246 (-) True LOC110533580
TU994124 other downstream 1197426 27162900 ~ 27164550 (-) False G873209
TU993955 other downstream 1450350 26890025 ~ 26911626 (-) False LOC110533569
TU995737 other upstream 160867 28540229 ~ 28543267 (-) True G874706
TU996256 other upstream 561878 28941240 ~ 28985070 (-) True G875194
TU998135 other upstream 1536005 29915367 ~ 29916505 (-) True LOC110533621
TU1000307 other upstream 3068120 31447482 ~ 31449163 (-) True G878962
TU1000802 other upstream 3846070 32225432 ~ 32225936 (-) True G879440

Expression Profile


XM_036990016.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_036990016.1 Expression in each Bioproject

Bar chart with 17 bars.
XM_036990016.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.