RNA id: XM_036990032.1


Basic Information

Item Value
RNA id XM_036990032.1
length 3956
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC100653448
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29844021 ~ 29881548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCTAGTCTGTCCAGTGGGCTTGACTACAATGAGCCCACTGTCACTGATGCAGAGGAAGCTTTAACGATGAACTTCTCTAACAAGGTCCATCATcaggtctctctctatctgattGGACGAGCCTATACAAGCCTCCTGTCCTGGTTTCTATGGTGAAGGTGATGGTAGACAATGAGCTGCTGGGCTATGCCTGTGAACAGTTCCTGGGGAAATCTGTGATGGAGATAAAGAGTGTCATTCTGCAGACCCTGGAGGGTCATTTACGCTCTATTCTCGGTACTCTGACGGTGGAGCAGATctaccaggacagagacagatttGCTGCTCTGGTGAGGGAGGTGGCAGCGCCCGACGTGGGCCGCATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTTTATGATAAAGTGGAGTACCTGAGTTCCTTGGGCAAGAGTCAGACAGCTGCAGTACAGCGAGACGCAGACATCGGAGTGgccgaggcagagagagacgcaGGAATCAGGGAAGCAGAATGTAAGAAAGAGATGATGGACATCAAGTTCCAAGCAGATACCAAGATGGCCGACTCTAAGAGAGGGTTGGAGATGCAGAAGGCTGCTTTCAATCAAGAAGTCAACACAAAGaaagcAGAGGCCCAGCTGGCCTATGAGCTGCAGGCTGCCAAGGAGCAGCAGAAGATCCGTCTGGAGGAGATCGAGATCGAGGTGGTTCAGAGGAAGAAGCAGATCACCATTGAGGAGAAGGAGATTGACCGCACTGAGAAGGAGCTGATCGCCACGGTCAAGAGGCCGGCCGAGTCTGAGGCTTACAAGATGCAACAGCTGGCCGAGGGACAGAAGATGAAGAAGGTGCTGACGGCCCAAGCGGAGGCAGAGAAAATCCGTCGTATCGGAGAGGCAGAGGCCGGTTCCATAGAGGCTATAGGGAAGGCTGAGGCTGAGAAGATGAGGCTGAAGGCTGAGGCCTACCAGCATTATGGAGAGGCTGCCAAGACTGCTCTGGTCCTAGAGGCCCTGCCTAAGATTGCTGGCAAGGTGGCGGCACCCCTGGCCCAGACCAATGAGATTGTCATCCTGAGCGGGGACGGTAGTCGTGTGACCGGCGAGGTTAACCGCCTATTGGCTGAGCTCCCCGTGTCCGTCAACGCCCTCACAGGGGTGGACCTGATgaagATCCCTTTTCTTCAGAAGATGACCAACCCTCAAGCATGAAAACAATCCAATGCACCCTGACTCCAATACATCTCTCTTATGCGCTCTTTAAATCAACAAGAAACACTTGAATACAAGAGTTGTTTTTTTACGACGAAAGAGTAGTCGTTCTCATTTCCTAGACCCCTGGTGCCTTGGCTCCTATAGAACCAGATCATCTGCATGGGCCACTGAATGTTTTTCTTTTAAAGAACAAAAAAAGCAACCGTtcattttatattttgtttttaagAAGTTACCCCCATTGTGTTGTACTTACACTCGTCTACATTATAGAAAAGGGGCATTCATCCTGATTTTTCTGTGCAGGCCTTATTCTGGTCTGAAAGGTCTCgccctgtgtctttgtagttTTTTTCATTGTGTTACAATTAGTACCTTGGATATGCCCATGGGTTTTTTACAGTTACTTGTGCAAGTGTTAAGTATTTCGTCACCCATTTTTATTGTTTCATTCTTATGTGCCTGTTAACCAACCAAGTGGCCAAACCTCAGGAAAAGTAATGGTTTGGCAATTCAAAAAGTTTAGTGATACTACAGTGAAATTCAATGAGAGATGTAGAAATGTACATGTACAATGCATCCTCATATAATTTGCCTTTTTCTTTACTAGAATCTTCACTTCATGTTTCATCTTGGGTATGGGAGAGGGGTGTCTTCTTAGGACAAGACATGCAAGACGCAGAAATTATACACATGAACACGTGTGCATCGATCTTCATGTCTGTATGAAGCCATATACTTTCAAGATTAGCCTTAATATAGAGACCCAGGAGTCCTGCTAGCTTTCCTGATCATCTGGATTACCTCAGTCAATCTAAGCTTTAATACTTGTTCTACTTCTTTCCAATTATTGAGATGTCACATGACAATATGCATTTCAGTCTCTTAGGGTAGCCAATGTTGTGTTATGTCACCTTGTGGTTCCATTCTtaaattacaaatacatttttataaaggATTTATCTCTACAGTTTACTAGACTCCTTAATTTCAGGATTTTACAAGGTGCTGCTTGATATCTTTGACTAGGAATTCAATACTGCCAAGACCTGTTGACCATCCAATCATTTATCAGCTATCTCCACATGCCTTACCCAATGTGCTTTAAACACAAGACGACATTTCAGTTTGTTTAGACGTTTGAGTTGGACTGGAGTTCATTTTAAGTCGTTTTTATTTTATGAAAATATTTTAGAGTTTATGAGATTTCTAGACACTTGCTGAACCAATGTTGCTCCGGTCAAACGCTATGCCACGTCCATGGACGTTctccgcaatgagtctggatgagtcataatacccttaacctagtggtcaaacaaggaaatggttccaatcgtttttccacaaTTAATTTTTCCtgtaggggattttagaaacacttcaaatttgggcagtgtttcatgtaggcttaccttggcatgacattttgataaccatgtaaatctctctaggacaaaaACAAAGTAGATTTTGTCCCCCGaaaagggaaaaaaaaaaaaatattattattatatctaGGACAAGGTGATTTTTATCAATATAGtagcctgtatttaccccccaaaaaatgaaatgctaattatctgctaatgtggctatcataaagaactacaaataccaTGATGATCTGAACAAAACTGCCAAATCGAGGCAAAGTTAAGAATCTCTGGAtaaactatctaatgttagctaaattgagtaattaataaattggctacatttctttaaattgacaattctgtgagTCGTCTTGTGcgagttttaaattgacacaatacctgttagcaaaggtcagctagagatgacgtgtAGGATTTTGCAGGGATGTGTAGTCTTGCATTGTCTACTTTGATactaattagcattttcaaatctgagcgtaaatatattgctaaaagtcaccttgtccaagagagatttacatggttatcaaaacgtcacgccagggtaagccttcacgaaacacagcccttatttcaagtgtttctaaaattccctatgggaaaaatgaatgttgGAAAAACGATtgaaaccatttccctgtttgaccacttTGTTTTATGGGTTTTATGACACcaccactgtggggctctattatAGAAAGTACCTCCCCAATGATGTCTAGAATGCAACTCATTCAaatctgattggtcccagaaactgaAGGGTTGGGCCAGAACCAGAACAAATTGTAAAGTGGCGTTTTTAAAatgtgtcattggctttgatactctggttagagatgatccaatcactgatgactttgttttgtacaaccaTATAAATAAGAATGAATTCCACCCTTCATTTTGACATCACCACAATTGACTTCACCAATGCACCAAAGTATGTAGCGAACATAGCGCAACGGAATAATTCAGTTTGTGTAGTCAGGcaaatgcattttattttacAGTAATGTTAACCTGCTGCCAATGCCAACGGTGGTATATTGCTGGTGTGGGGGAGAATCTAATCCCTACTGATCACCAAAAGTGTTTCTTTGgaaatactgtatttattttattgtgCTTTTATTATATTCTCTGATGTCAGATTTACATCTTAGACCATTTGAAGTGATAAATTGTGTGATACAGTACTGGAAACCAAAATGCAACCTGTATTCTGTTTGATGAAATGTCTGGTTTGAATTGTATAAAGTTGGAAATGTTGAACAGGGCAGTAgacacaggcccacccactggggagccaggcccaaaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU997184 lncRNA upstream 31698 29833393 ~ 29836898 (+) True LOC110533618
TU997077 lncRNA upstream 83463 29783494 ~ 29785133 (+) True LOC110533617
TU997153 lncRNA upstream 101754 29766589 ~ 29766842 (+) True G876060
TU997124 lncRNA upstream 141838 29726469 ~ 29726758 (+) True G876033
TU997123 lncRNA upstream 143375 29721281 ~ 29725221 (+) True G876032
TU997197 lncRNA downstream 7712 29889260 ~ 29917633 (+) True LOC110533623
TU997189 lncRNA downstream 23214 29904762 ~ 29905984 (+) True G876084
TU997191 lncRNA downstream 100541 29982089 ~ 29986082 (+) True LOC110533619
TU997199 lncRNA downstream 164790 30046338 ~ 30079512 (+) True G876094
TU997176 lncRNA downstream 166580 30048128 ~ 30049878 (+) False G876079
XM_021618017.2 mRNA upstream 33497 29804272 ~ 29835099 (+) False LOC110533618
XM_021618016.2 mRNA upstream 83301 29683275 ~ 29785295 (+) False LOC110533617
XR_005053616.1 mRNA downstream 7751 29889299 ~ 29900576 (+) False LOC110533623
XM_021618019.2 mRNA downstream 40505 29922053 ~ 29982348 (+) False LOC110533619
XM_021618018.2 mRNA downstream 50024 29931572 ~ 29982348 (+) False LOC110533619
XM_021618032.2 mRNA downstream 139942 30021490 ~ 30022290 (+) False LOC110533629
XM_036990037.1 mRNA downstream 199532 30081080 ~ 30199949 (+) False LOC110533631
TU996858 other upstream 286066 29581126 ~ 29582530 (+) True G875776
TU996837 other upstream 321321 29546639 ~ 29547275 (+) True G875756
TU995929 other upstream 1038432 28829772 ~ 28830164 (+) True G874876
TU995526 other upstream 1129691 28727774 ~ 28738905 (+) True G874510
TU995386 other upstream 1284181 28577452 ~ 28584415 (+) True G874378
TU997196 other downstream 37728 29919276 ~ 29980630 (+) False LOC110533619
TU997180 other downstream 139093 30020641 ~ 30050053 (+) False G876079
TU997186 other downstream 139543 30021091 ~ 30022290 (+) False LOC110533629
TU997187 other downstream 139543 30021091 ~ 30022290 (+) True LOC110533629
TU997763 other downstream 866958 30748506 ~ 30755656 (+) False LOC110533640

Expression Profile