RNA id: TU997197


Basic Information

Item Value
RNA id TU997197
length 2566
lncRNA type read_through
GC content 0.45
exon number 3
gene id LOC110533623
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 29889260 ~ 29917633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGAGTTGAGGGTGTTGTTGGTGAGTTTGAGCTTGTGGAACGAGACGGGGTATTGCATCCACCTCTCCCCCAGGGAGGGAGAGTCTGGGTGGATGAAGAAGCGGTTGGGAAGATGTGACTCGGTCATACCACTCACTTCCCAGCGATCCCTGCTCCACTGCACAGGACAAAGCTCGCGACCCTGGAGCGACACCCGGACTTGAAGAGCTGAAAGCTCGGGTTCACACCCGACTTTACCGCTGCTGTTCCAAGACTGGCCCCGCCGAACCGCATCTTTACAATCTAGTAGAAGCAGAGAGCATGAAGACATCCTTGAAGTGGGCCCTGCCCTGTTGGGTCTTCAGAGCTCTCAGCTGCTCTTTACTCAGCCACGACTGGGCCTCACTGCCCTCATGAGGAGCCACATCACCACCTGGCTCGCCCTCATCTCCAGACCCTGGTGTCCTGGTCTCCCTgtccgtcctcctctcagcccaGGGGGGCTTGATCACACTGCGGACCTGCAGCTTCCGCACATTCACCACTCCACATGTCAGATCTGCTGTAATCTCCAACAACCTGCTCTTGCTCTTCAGCGAGTCAACCTGTGCCATACACACAGTAGAGGGTTCATGTAACAATTCATATGTAGTAGACAGTTCCTAGTATATTACATGCTAATAATGCATTATATCATATGACAACCACAATCTCACCTCAGTGCATATTTAAGATGAGGCcatggagagaggatgaggttTGCATGTGTCTGCTATATAAATAGAGAAGTACCTTATTGAGAACTAGGACTGCTGGGACATCTGGGTACTGGGTCAGGCATTTCAGGACCTCAAAGTCTAGCTTGTTGCAGGCCCACTTGTCCGACACATCCACCATTATCACCACTGAAGAGATAACAACAACAAGAGGACCTAAACACAATGCAGTGCATTGTCATTTGCCcaaaattattttatttcaaaGGAATTGCAAAATGTGTGGGGCCACATATTGTTTAAAAAGCATAGACTAGACTGTCTGAAAAGCAATAGCCTTGCAGCAATCATCTGTGTGCCCGAAAAGTTGCAAAAAGTGAAGAATCGTGCAGTACCACGGTCAGCTTCCTTGACAATATTCCAAGGATCCTCGAGGAGAGACTTCTCCAGCTGGTGCCTGTGGAGAAGATAAATAGCCCGTTGGAGATTCGCCTATTTCATTTTATGCACTGCAATACCACAGTAATGAAACCGGTGTAACAAATCACCTCTTGACTTTTGAAGGTGTAGTGAGTCCAGGAGTGTCAAGTAAAATCTAGAGAGAGAATGTATAAgtatacatgtacagttgaagtcggaagtttacatacacctcagccaaatacatgtaaactcagtttttcacaattcctgacattttatcctagtagaatgtccctatcttaggtcagttaggatcaccactttcttttaagaatgtgaaatgtcagaataatagtagagagaatgatttatttcagcttttatttctttcatcacattcccagtgtgttaatgttttacatacactcaattagtatttggtaacattgcctttaaaattgtttaacttgggtcaaacatttcaggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaattgagtcagatttgtaggcttccttgcttgcacaagttttttcagttctgcccacaaattttctataggattgaggtcagggctttgtgatggcctccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggacattgtccatttggaagactaagcttgtcttgagattttgcttcaatatatccacataattgtcctccctcatgatgccatctaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagatagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatagaactttttggtaaaaactcgtcgtgtttggaggacaaagaacgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacattatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggcaatgtatcatgagattttgagtgaaaacctccttccatcagcaagggcattgaagataaaacgtggctgggtctttcagcatgacagaccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttggcctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccaccataatttgc

Function

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU997190 lncRNA upstream 8506 29880243 ~ 29880754 (+) True LOC100653448
TU997184 lncRNA upstream 52362 29833393 ~ 29836898 (+) True LOC110533618
TU997077 lncRNA upstream 104127 29783494 ~ 29785133 (+) True LOC110533617
TU997153 lncRNA upstream 122418 29766589 ~ 29766842 (+) True G876060
TU997124 lncRNA upstream 162502 29726469 ~ 29726758 (+) True G876033
TU997191 lncRNA downstream 64456 29982089 ~ 29986082 (+) True LOC110533619
TU997199 lncRNA downstream 128705 30046338 ~ 30079512 (+) True G876094
TU997176 lncRNA downstream 130495 30048128 ~ 30049878 (+) False G876079
TU997177 lncRNA downstream 130495 30048128 ~ 30049878 (+) False G876079
TU997178 lncRNA downstream 130495 30048128 ~ 30049878 (+) False G876079
XM_036990030.1 mRNA upstream 7712 29844021 ~ 29881548 (+) False LOC100653448
XM_036990031.1 mRNA upstream 7712 29865200 ~ 29881548 (+) False LOC100653448
XM_036990032.1 mRNA upstream 7712 29868596 ~ 29881548 (+) False LOC100653448
XM_021618017.2 mRNA upstream 54161 29804272 ~ 29835099 (+) False LOC110533618
XM_021618016.2 mRNA upstream 103965 29683275 ~ 29785295 (+) False LOC110533617
XM_021618019.2 mRNA downstream 4420 29922053 ~ 29982348 (+) False LOC110533619
XM_021618018.2 mRNA downstream 13939 29931572 ~ 29982348 (+) False LOC110533619
XM_021618032.2 mRNA downstream 103857 30021490 ~ 30022290 (+) False LOC110533629
XM_036990037.1 mRNA downstream 163447 30081080 ~ 30199949 (+) False LOC110533631
XM_036990038.1 mRNA downstream 163447 30081080 ~ 30199949 (+) False LOC110533631
TU996858 other upstream 306730 29581126 ~ 29582530 (+) True G875776
TU996837 other upstream 341985 29546639 ~ 29547275 (+) True G875756
TU995929 other upstream 1059096 28829772 ~ 28830164 (+) True G874876
TU995526 other upstream 1150355 28727774 ~ 28738905 (+) True G874510
TU995386 other upstream 1304845 28577452 ~ 28584415 (+) True G874378
TU997196 other downstream 1643 29919276 ~ 29980630 (+) False LOC110533619
TU997180 other downstream 103008 30020641 ~ 30050053 (+) False G876079
TU997186 other downstream 103458 30021091 ~ 30022290 (+) False LOC110533629
TU997187 other downstream 103458 30021091 ~ 30022290 (+) True LOC110533629
TU997763 other downstream 830873 30748506 ~ 30755656 (+) False LOC110533640

Expression Profile