RNA id: XM_036990046.1


Basic Information

Item Value
RNA id XM_036990046.1
length 9961
RNA type mRNA
GC content 0.55
exon number 47
gene id LOC110533631
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 30081080 ~ 30199949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCCAGGACATCGACAGACAAATGTGGTGCAGCGTTCTTGTCTGCTACGACCCGTCTACTGTCCGTCAACAGCGGGTTTACAAAGCATCAGCCCTTTAAACCCAACAAGAACACATTTACTTCTTACACGGTACTTTTTCCCCGAATGTGAGGTGTTTTGGGTCTCCAGCCATGCTCCAGCTGAGCCCCTGATCAGTGCAGCAACAGCCTGCCCAGCTTAACCCGGAGCCAAGATGTCCAGTAGCTCGGGCTATCCCCCTACCCAGGGCAGCTTCAGCAGTGAGCAGAGTCGCTACCCATCACACTCTGTCCAGTACACCTTCAGCACCACACGCCACCAACAGgagttcACCGTCCCGGACTACCGAGGTCACCTGCAGGACCAGCAAGGTCGACGAAGGCCTTCCTTGCTTTCGGAATTCCACCCTGGAACTGAGAGGCCTCCAGAGAGACGTCATGGCTACGAGCAGCAGTTCCACAGTGTCACCTCCCAGCAGCAGGCTGACGGCCACGAGGCTCTGGAGGCCAAGCGGCCCCGCATGGAGACTGTCTCGGAGGCCCACTTCGCCCGTGGTGCCCTGCCCGGGGGAATCATTTTACCCCTGCAGTCCCACCAGGTTCAGGACAGCCTCAGAGCCAACGTAGGGGAGGTCAATAAGGAGACCCAGTTCAGTGGCATGAAAGCCGAGTCCCAGGCTCCAGGAGGGCTGCACCACGTGGGGGAGGTGCCTGACAGCTCGCCCTCCAGATTGTCCAAGGAGGAGCTGATCCAGAGCATGGACCGTGTGGACAGAGAGATCGCTAAAGTGGAGCAGCAGATCTTCAAGCTGAAGAAGAAGCAGCAACAACTGGAGGAGGAAGCGGCGAAGCCAGTGGAGCCAGAAAAGCCAGTGACCCCTCCCCCCATACCACAGGAACACAACAAGCACCGCAGCATTGTCCAGATCATCTATGACGAGAACAGGAAAAAAGCTGAAGAGGCCCATAAGATATTCGAAGGTCTTGGTCCTAAGGTTGAACTGCCCCTCTATAATCAGCCATCGGATACAAAAGTTTACCATGACAACATAAAGACtaaTCAAGTGATGAGGAAGAAACTGATTCTGTTTTTCAAGAGAAGGAACCATGCTCGTAAACAAAGGGAACAGAACATCTGCCAGCGCTACGACCAGCTAATGGAGGCCTGGGAGAAGAAGGTGGAGCGGATGGAGAACAACCCGCGTCGCAAGGCCAAAGATAGCCGCACCAGAGAGTACTATGAGAGACAGTTCCCCGAGATACGCAAGCAGAGAGAGCAGCAGGAGCGCTTCCAGAGGGTTGGTCAGAGAGGAACTGGAATGTCTGCGACCATTGCCAGAAGCGAGCATGAGATTTCTGAAATCATCGATGGCCTTTCTGAACAGGAGAATAACGAGAAGCAGATGAGACAGCTGTCCGTCATCCCACCCATGATGTACGACACCGAGCAGAGGCGAGTCAGGTTCATCAACATGAACGGCCTGACGGATGACCCCATGAAGGTGTACAAGGCTCGGCAGTTCATGAATGTGTGGACCGAACACGAGAAGGAGATCTTCAAAGAAAAGTTTGTTCAGCACCCAAAAAATTTTGGCCTCATTGCTTCTTATCTAGAGAGAAAGtgtgtgtccgATTGTGTCCTGTACTACTACTTGACCAAGAAGAACCAGAACTACAAGACACTGGTGAGACGCAACTACGGCAGACGGCGAGGGAGAAACCACCAAATAACACGATCCTCACAAGAAGAAAAGTCAGACGATAAACCTGAAGAGGACAAGTTGGAGAAGTCAGAGAAAAAAGAGGACGAGCAGAataaggaagaggaagagaaagatgaAAAGGAGGACTCCAGGGACATCGGAAAAGACAAAGACAAGTGTGACGGCGGGGAGGACGAGGACGGTAAGGAGCAGAGCACGCCACGTGGCAGGAAGACCGCCAACAGCCAGGGCCGACGCAAGGGAAGGATCACCACGCGCTCTATGGCCAATGAGGCTGCCTCTGTGGCTGCCGAGGAGCCAACGCCACCCGAGCCTCTCTTGCCCTCCGAGCCCCCTCAGCCTTCCAAACCTGAGCCTACTACCCAGAAGGCTGTGAGAGAGCCCACCAAATCTGCACCGGGTGAGCCCCCCATGGACCCTAACAGAGGAGCAGGAGGAGCTTCTGCTGCGAACGGCGAAACCGGAGAGACTTCTCGCTGGaccgaggaggagatggaggttgCCAAAAAagggcTTGTCGAGCACGGGCGCAACTGGCCAGCCATTGCCAAGATGGTGGGCACCAAGAGCGAGGCTCAGTGCAAGAACTTCTACTTCAACTACAAGAGACGGCACAACCTGGACAACTTGCTCCAGCAGCACAAGCAGGACACACGGCGGGCACGGGGAGATCGAGACCCGTCTCAGAGCGAGAGCATGGCTTCAGCTGACGACGACCAAAACCCAGAGGATAGTGATGGTGGAGATAACAGCTCAGACACAGAGAGCGCCCCGTCCCCGTCGGACCCCTCCAAGGCCGGAGGGGATTCCCAGAGGGGAGACGGAGTTGGAGGGTCAGAGAACCAGTGGTCCAACAAGGGCCAGGCTAGCAATGGGAGGGTCCAGGAGCCCTCCTACGGGGAGCTGAGGGTCAAGTTGGAGAAGAGCCCAGAGGGAGAGGCCAGAGAGCCTGGCTCtcaggaggatggggagagggccCGGGTGGCCTACGAGGGCCATGGGCACCCCAAGAGCGAGccccaggatgtggacatgaagcctGGGGGGGCCGGGGAGGTGCAGGTGAAGGTGGAGCCTGACTCTGCCAAGGAGAAGGGGGAGCcagagaagcagagggaggggCACCACTCAGACAATGACTCCAGTGCCACCTGCAGCGCCGACGAAGATGTAGACGCTGAGCCCGAGAGACAGAGGATTTTCTCTAGTATGGACAAGCCTTCGTTGCTCAGCCCTCCCGGCTCAGTGCTGATGTCCACGGCCAAGCAGGCCCACCTCAACATGCAGCAGCTCCAGCAGCGCGCCGCTACCATCCCGCCCATGGTGGTTCCTTTTGGTCCTGGTGGAATTTCCATAGGAGCCCCCCTCAGCGGTTTTGCCATGTTCCAGCACCAGATCACGGCTGTGCACGAGTCGGCCCACGCCGAGGAGAAACAGAGGCAGGACCAGGCTGACCCCGAGCGCAGCAGACAACCCACCAACTGCCCTGGCTTCACCAACCACAGCCCCACCATAGTGGACAGGGAGGGTAAGCCCTTCCCCTACATGCCTTATGATATGAAGATGGCTCTGGAGCAGGAGGCCCAGTCTGGTCGGCCAGGCTCTCCCTACGGGCTCTCTCCCAGGGAGATGAGCAAGGCCTCTCCTCAGCCCAATGACACCAACGCCTCCCGCTACAGCGTGCCTCCAGtgCTCCAGCCAGCTCCCAACCAGGTGGTCCAGAGCCTGCCTGATGGAGTCCGTGTGACTTTCTCCAGACACAGCCGACCCGCCAacattccatctcctcctccattaATTCCAACCTCCAAACCCACAGACAAGCCCTCCTTTATCCAGGGTGGCTCCATCTCCCAGGGGACTCCTGGTACGTACCTACCATCTCATGCTGTCTACGGTGGCCCAGAGGGGGCAAAGAGTTCTGTGGGCTCCATATCCCTGGGCCTGCCCAGGCAGCAGGACCCCACCAAGCCTGtgTCCTACATTAAGCAGGAGCAGTGTTCTCCGCGTGGCCAGTCTGAGGGACTCCTCTCTCGCACGCAGTATGAGGGGGTAGTCAGAGGAGGCCCAATGGATGGGGGTATCAGCAGGGGAAACCTAGCCAGAGGATCAATCACACAGGGTACGCCAGCCCTGTCCGGGTCCAGCATTGCGGCTGACCTGCTGAAGGGCACCATCACCAAGCTGCCCACGGAGGACCTGAGCAGCCCAGAAAAGGCTCGGGAACAGCTGGCCAAGGGACACGTCATCTACGAAGGCAAGAGTGGACACATCCTCTCCTACGACGCCATTAAAAACCCAAGAGAGGCCACGCGTAGCCCCAGGACAGGCCATGAGCTCAAACGCTCCTACGATATGATGGAGGTCGCCAGAGGCCACCCCGGGAGAGAGGGAGCCCCCTTCGAAGggtTGATCAGCCGAGCCCTGCCCAGAGACAGTCCCCACGGGGAGTCTAAGGAGAGGCCCATGATGACTGGATCCATCATGCAAGGTACACCCAGAACCTCTGCAGAGGCCTATGAGGAGAGCATGAAGTACGGCAAGCAGATAAAGAGGGAGAGTCCACCCATCCGCTCCTTTGAGGGGGGGATAGGTAAGGGTAAGCCCTACGAGGGGGTGAACACCATTAAGGAGATGGGCCGCTCCATCCACGAGATCCCCCGCCAGGAGCAGCCTGGACAGGACCCCCGCAAGACCCCCGACATGGCTGCCAACATCCGAGCCTCCATGGAGGGCTCTATATCCCAGgGCCATCCTCTGAGCCAGTCGGCCATCAAGCACAACGTCAAGTCCCTGATCACCAGTCCCAGTAGGCTGCCCCATGGTCACACCATGCCCCCACTGGAGGCCATGGAGCGGGCCAAGTATGAGGAGAGCAAGGCGGCAGCGGAGCAGCGAGCGCGCCACACCTCTGTGGTCAACTCGGCAACCTCCGTCCTGCGTTCCACCCACCAGGAGCAAGGAAAGTCCCAGCTCAGCCCGGGCATGTACCAAGATGCCGACGCCCGCAGGACCCCGGTCAACTACagcactagctccatgtccagagGCTCACCAATGCTGGGCCGAGGACAGGAGGGCTCTGGGAAGCCTGCGTCCCATGACCGGAAGAGTACCATGACCCCCACTCAGAGGGACAGTGTTCCAGCCAAGTCTCCTGTGTCAGGGGGTGACCCCAACCACCCTATGGCCTCCCACAGCCCCTTCGACCCCCACCACCGCCCCATGGCCCCCGGAGAGCCCAGGTTCCACCTACCTCCACACCTAGACCCTGCCCTCTTCCACAGGGCCGTCCTGGACCCAGCTGCGTACATGTTCCCGAGGCAGCCGTCCCCAACGGGCTACCACAACACCTACCAGCTGTACACCATGGAGAACACAAGGCAGACCATCCTCAATGATTATATCACCTCCCAGCAGATGCAGGTTATCCCACGGCCCGACGTCGCCAGGGGCCTGTCGCCACGGGAACAGCAACCGATAGCTCTGTCTTACCCTCCCGGAGCGCGAGGGATTATTGATCTAGCCCAGATGCCTCCAACTATCCTGTTGCCTCACCCTGGGGGAACAGGTACTCCCACTTTGGACCGCATCACCTACATCCCTGGAGCTCAACCCCCTTTCCCTCCTAGGCCTTTCAACCAAGCCTCCATATCTGCAGGCCACCAAGCCCACCTCGCAGCTACTGCAGCGGCCAACCAGgagcgagaacgagagagggagcgTGATCGGGAGcaacgagaaaaagagagagaaagggagcacaGGGAGCGGGAACAGGAGCAAAGACAACGAGAGCGTGAGCGAGCAGTGGCTGCAGCGGTTGCCAATGACTACATGCGTGGAGGTCCTGGGCAGCCAGACAGACCGGGTAGCCGTGGATACCTGCgtagcccctccccctctatGAGGTCACAGGAAGCCCAGCAGCAGCGGCCCAGCATCTTCCAGGGAGCCAACAGCAAGGGCGTCATCACCCCTCTCATgCCGGCAGCGGCAGCAGCCCAGGCAGGAGCCCGTTACAGCACTGCAGCCGACGCCCTGGCTGCCCTGGTGGACGCCGCCGCCTCCGCCCCTCAAATGGACGTCAACAAAGGCAAGGACTCTTCCAAGCATGACCGAGACGACGACATGTCTTTATCATCCTTGGTGGCCAGGCGGCAGCacgagcagcagcagcaggaggcagACAGGCGCTCCATGCAGTCTCCCTACGGCCCAATGTCTCTGCCAGGGGGGAAACTCCACCCAGGATACGCTGAGGGGCCCAGTGGTCCCCAGGGGAGTAAGGACAAGGGTCCTCCCAGCAAGTCACGCATCGAGGAAGAGCTGAGGACCAGAGGAAAGACCACCATCACGGCCGCCAACTTCATTGACGTCATCATTACGAGCCAGATCGCCTCGGACAAGGACTCCCGGGAGAGAGGCTCCCAGAGCTCCGACTCCTCCAGCAGCTTGTCGTCCAGTAGGTATGAGATCCCCAGTGGAGGAGCCATCGATGTGATCAGCCCAGCCAACTCACCAGCCCAGTCCCAGCAGCAGCAGGACGACAGGGACCGGGCCGACAGGGACCGGGCCGACAGGGACCGGGCCGACAGGGACCGGGCCGACAGGGAGAGGGCCGACAGGGACCGAGCCGACAGGGACCGGGCCGCACAGGCAGCAGCACAAGCAGCTGGCATGCGTCCCTTTGACATGATCCGCTACCGCCAGTCAGCAGAGTCACAGCAGCCCCCCTCCTCCCAGGCTGACGGAGGGTACTCCCAGTCCCAGCAGGTCCCCAAGACCCACCGGGTCATGACCCTGGCTGACCACATCTCGCATATCATCACCCAGGACTTTGCCAGGAACCAGGACCCTCCTCAGTCCTCCGCTACCATCTCCTCCTCTGCCACCACCACATTCCAGAGTGCCCAGCTGCCCGTGTCTATCTTGGGCCCCGGGGGTCGTGCCAAGGTCCCCAGCCGCTACAGCCCAGAAAACCAGGCCCAGGCCCCATCACACCACCAGAGACCCACACCCAGCAGAGTGTCTCCCGATAATGCCCCTGACAAGCCCAGAGCCAGACCTGGTAAATCCCCTGATCGGGGTGGCAGGGGGGCGATAGAGAGCTATGAGCCCATCTCCCCTCCCCAGAGCTACCAGGATAAACAACAAGAGGCCAGAGAGCAGCAGCAACCACAGAGGCGAGAGGCTGACCAGCCTGAGATGAGGGGTGACTCTCGCTCCCCTGGCAGTGTCAGCTACCTGCCCTCCTTCTTCACCAGGCTGGAGAACACCTCCCCTATGGTGAAATCCAAGAAGCAGGAGATCATTCGTAAGTTGAACTCCTCTGGTGTCAGTGATTCTGATGTTGGAAATGCACAACCAGGCACAGAGATCTTCAACTTGCCTGCTGTGACCAGCTCAAGTAGCGTGAACCCCAGGAACCACTCCTTCAGCGACCCGGCCAGTAACCTGGGCCTGGAGGACATAATTCGCAAGGCCTTGATGGGGAACCTGGAAGAAAGGCCAGAGGAGCACCAGGGAGGGCCTCAGCCCAGCTCTAACACCACCAGTAACGAGGCCCGCCAGGAGGCCAACCCTTCACCTAGCATGGGCAAACAGAAACTGCAGAGCAAAGCCAACAGCCGAAAGTCAAAGTCGCCCAACCCAGGCCAGGCATACACAGCAGCAGAGCGGCCCTCGTCAGTCTCTTCCGTCCACTCAGAGGGAGACTACCACCAGCAGCCCCCAGCCTGGTCCTGGGAGGACCGGCCCTCGTCCACAGGCTCCATGCAATTCCCCTATAACCCCTTGACCATGCGCATGCTGAGCAgcaccccccccacctccatacAGACCCAGCAGCCCCCACCTGGAGGCCCTCTGGGGCCCCAGCAGCAACAGCGTGTATGGGAGCGAGAGCCCCTACTGTCGGAGCAGTATGAGACCCTGTCAGACAGTGACGACTGATCCCTGCCACAAGAATCCTACCTGCCCCCCATCCCACCCCAGAGGAAGGGCAGGCCTCTCAGTACAGGCCTGCATGCCCCCCCTCACAAAAAAAACCTATCCTCACTCACTGGTGCTGATCGAGTGTGGGGAGAACAGGGGGGTGTGGCGGTATCCCTTTTGGTTCAAGTGCGCCCTCTAGCTGCCAGCAGGAAGAAAGGCAGCGAGTGACTTCTGACGGGCTGGAATCTTCAGGATGGACTGACTGACTCCCTTTACGTCCAGAAGCTTTGATAGACACAGCCTGCCAGGACGGAGAACGCCTGAGTGGAAGATATGATGAAAGATGAAGAACTTGTATGTAAAAAgatgaaaaaaacaaacactttttTTGTGGTTGATTTCTGTAAAGAAATGCTTTTGTCTTTAAGAAAAATAATTGTATGTAAATAGAGTAACCTTTTGCAGTGGGTTTTTTTCTGAACTTTTAGTGATGCTTTTAAATGGATCCACTTTGTTTTTGAATGAATGGGGGGGGTTAATCTTGAATATCAGTCGGtctctccctgtccatctctTACCCCCCACCTATCTAGCACCACAGTGAAGCTGAGAGACAGAACCTGTGGGTTGTACTTGATAATGAGGGGAGAACTGTAGGAGAAGCCCTGACCACCAAGCACCACCAAAGCCTGTTGTGGACATAAGTGAATGAAacaaacacatgttaacatttcAATTGCGGCTTTGTAATTTGATGCCTGTCTTTGCAACACTGTGGAGAAAGATGATGCATGGATGTAACAATATTCCCCCTGATCTAGAACTTAAAGAAAGCTTTTGTCAGTCAGTCACCACACCCTTGAGACAAAACTAATGTATTTGGTACAAGTTGAGAACACTGGTGTAGGAGCAAGCAGAAAGGTGAAAGAAGACTAATTAATAAGCTTGATGTTGTCCCAAGTTGTTTCTTCTCCTCATGACTACTTCTGGGCCCCCATGTTGATCTGAACTCTGTCATTGAGCCAATCGTTTTTGGATTAAGCTGACCACCACTACGGTGGGTGTATTGTATGGCACACAGTCTGACCCGTAGCTATCCCTCTAGGGTTTCCAACAAGTGCTGAATGTTCTACTTACAGTACTCTGCAACCCACGTTGTCATGGTAACTAAAGTACATCGGGAACCTTTTCTAGAGGTTCGCCCATGCCTTGTGGCTGGAGAAAAATAAGGCAGCTTTAAACACATTTTCTCAGAGATATAAGttggtgtttttaatgtttttgttttgtatcctTAGTCCTTTTTTTTTTGTATACTGTTCAGACAGAAAACCGATTTGTGTGATTTGTCTTATGTTTTAGACAAAAAAAGACAACTAACCAAACATAAATGGTCTGCACCATTGTTGCACTTTTTGCTTTGTAACCTTTGACAACAAAAGCATACTTTCTACCTGTTGTATAACTTATTCACGCTCCTGCAGAGGATTGTACTGAGATGTGCTTGACTTTGACTTTGCCCATCACTCATGGAAACCTGGATGTTTATGACCGAGTTCCTGTCTTCTCTTGTAGCTGGTACATGGTTTTGTAGTGTGACATGcattgcagttttacttttgttTGGGGTACAGTCAAGATGTTAAGGAAGAGTTGCTTTTTTGCTGTCATGGTGACTATTCAAATCCATGGCCTCTTAATCTATTCTCAATATTCTAGATTAATATCAGCTGTTTTTTTGTCAACAGACATGTAGCTTCTTTACATTTTGAATTTTGACAAGGTCAACATTGATATTGACAGTAATGTTCCATTTTGGTTCTCTCAGCTTTTGCTTTGCTTAAATAACAATCCCAATCTGCTCTAAACTAGATTTAttttccccaaaaaatatttagatttgttttaagtCCTAGAGCTCAGATTTTTGCTATCATTTTCAACATCAGTTATTCAACATCCTATTTTTGATGGGATGTCAAGTGTTTACAATGGCAATGACAAAAAGTTTACAACACTTGAATCTTAAAGAAAATCGAAATGAAGACAGAAAATAATTAGTGCATCTTTTCAGCTCAATGGAGtccaaaatggcaacctattccctatatagtgtactacttttttGGGTGATATCCAACCTGGATGCAATTTTTTTTTGGCTGTTTAAAATTGTATCCCATGATGTTGAAATGCAATGTTTGTATCGCACAATGTCTCTTAATAGTCTATTACAAGAGTTCAGACCAATCAATAAAGTGGATCAGTTCTCCACCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU997199 lncRNA upstream 1568 30046338 ~ 30079512 (+) True G876094
TU997176 lncRNA upstream 31202 30048128 ~ 30049878 (+) False G876079
TU997177 lncRNA upstream 31202 30048128 ~ 30049878 (+) False G876079
TU997178 lncRNA upstream 31202 30048128 ~ 30049878 (+) False G876079
TU997179 lncRNA upstream 31202 30048128 ~ 30049878 (+) False G876079
TU997325 lncRNA downstream 13416 30213365 ~ 30213938 (+) True G876209
TU997403 lncRNA downstream 65399 30265348 ~ 30265826 (+) True G876284
TU997414 lncRNA downstream 79793 30279742 ~ 30280008 (+) True G876295
TU997415 lncRNA downstream 82938 30282887 ~ 30283112 (+) True G876296
TU997484 lncRNA downstream 169303 30369252 ~ 30389738 (+) True G876361
XM_021618032.2 mRNA upstream 58790 30021490 ~ 30022290 (+) False LOC110533629
XM_021618019.2 mRNA upstream 98732 29922053 ~ 29982348 (+) False LOC110533619
XM_021618018.2 mRNA upstream 98732 29931572 ~ 29982348 (+) False LOC110533619
XR_005053616.1 mRNA upstream 180504 29889299 ~ 29900576 (+) False LOC110533623
XM_036990032.1 mRNA upstream 199532 29868596 ~ 29881548 (+) False LOC100653448
XM_021618043.2 mRNA downstream 260951 30460900 ~ 30463018 (+) False LOC110533637
XM_021618042.2 mRNA downstream 260951 30460900 ~ 30463978 (+) True LOC110533637
XM_021618050.2 mRNA downstream 548490 30748439 ~ 30771331 (+) False LOC110533640
XM_021618051.2 mRNA downstream 571504 30771453 ~ 30950758 (+) True LOC110533641
XR_005034462.1 mRNA downstream 710154 30910103 ~ 30910156 (+) True LOC118937065
TU997180 other upstream 31027 30020641 ~ 30050053 (+) False G876079
TU997186 other upstream 58790 30021091 ~ 30022290 (+) False LOC110533629
TU997187 other upstream 58790 30021091 ~ 30022290 (+) True LOC110533629
TU997196 other upstream 100450 29919276 ~ 29980630 (+) False LOC110533619
TU996858 other upstream 498550 29581126 ~ 29582530 (+) True G875776
TU997763 other downstream 548557 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other downstream 548557 30748506 ~ 30755613 (+) True LOC110533640
TU999056 other downstream 1005134 31205083 ~ 31205418 (+) True G877809
TU999098 other downstream 1041861 31241810 ~ 31322600 (+) True LOC110534883
TU1001241 other downstream 2781917 32981866 ~ 33045499 (+) False LOC110533671

Expression Profile