RNA id: XM_021618043.2


Basic Information

Item Value
RNA id XM_021618043.2
length 864
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110533637
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 30460900 ~ 30463978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGAATTGACCAGCCGTTCACAAACATCATGGCGACGACCGTGAATAATGGAAATGTCCCTGTGTCGGACACACAATCCTCAACCTCGGCTGATCCACGCTATGAAGGTTCAACATTCCAGTACAGCATGCTCCTGGAGCACCTAATCGGGGAGAAGAGGCCGATTAAAGATTTGAATCCAACCGTTATGGGAGGTCTTCCCAATCCCATGAAAACCGACGACCAGAAGATGATCGAACGGGGAATGGAGAGCTGTGCCTTCAAGGCGGTGTTGGCATGTGTTGGAGGGTTTGTTCTTGGGGGAGCGTTTGGTGTGTTCACGGCTGGCATAGATACCAATGTGGGATTTGACCCCAAAGACCCCATGAGAACACCTACTGCCAGAGAAGTCCTTAAAGACATGGGCCAGAGGGGAATGTCCTACGCCAAAAACTTTGCAGTCATTGGAGCAATGTTCTCCTGCACAGAGTGCATCATTGAATCGCACAGGGGAAAGTCAGACTGGAAGAATGCTGTCTACAGTGGTTGTGTTACTGGGGGAGCAATAGGATTTCGTGGTGAGTTAACTACTTAATCTGGGGCGAAGGCTGGAGTGCTGGGATGTGGAGGTTTCGCTGCCTTCTCTGCTGCCATTGAGTACTATCTCCGGTGAAAACCAGGGGGCCTTCGTTACCCCTGTGGAATATGGTTGAGGTGACTGTCCCTCTGGGCCAGTAACAGACTTTATACCTCATGGAAAGAAACACATCCCAGAGAACACTGCTCTGCAGATGGCACATCTGGTCATGAGGATTATTACAGTTGGACAATTCCATCCTGGTCTTCATCAATCAATtacatttataaagcccttcttacatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU997550 lncRNA upstream 1528 30459150 ~ 30459372 (+) True G876424
TU997534 lncRNA upstream 26325 30434346 ~ 30434575 (+) True G876410
TU997522 lncRNA upstream 33984 30417673 ~ 30426916 (+) True G876398
TU997484 lncRNA upstream 71162 30369252 ~ 30389738 (+) True G876361
TU997415 lncRNA upstream 177788 30282887 ~ 30283112 (+) True G876296
TU997749 lncRNA downstream 261194 30724212 ~ 30725822 (+) True G876601
TU997970 lncRNA downstream 618254 31081272 ~ 31081812 (+) True G876813
TU997906 lncRNA downstream 656817 31119835 ~ 31122918 (+) True LOC110533645
TU997908 lncRNA downstream 688835 31151853 ~ 31153059 (+) True LOC110533646
TU999023 lncRNA downstream 713955 31176973 ~ 31177262 (+) True G877782
XM_036990037.1 mRNA upstream 260951 30081080 ~ 30199949 (+) False LOC110533631
XM_036990038.1 mRNA upstream 260951 30081080 ~ 30199949 (+) False LOC110533631
XM_036990039.1 mRNA upstream 260951 30081080 ~ 30199949 (+) False LOC110533631
XM_036990041.1 mRNA upstream 260951 30081080 ~ 30199949 (+) False LOC110533631
XM_036990042.1 mRNA upstream 260951 30081080 ~ 30199949 (+) False LOC110533631
XM_021618050.2 mRNA downstream 285421 30748439 ~ 30771331 (+) False LOC110533640
XM_021618051.2 mRNA downstream 308435 30771453 ~ 30950758 (+) True LOC110533641
XR_005034462.1 mRNA downstream 447085 30910103 ~ 30910156 (+) True LOC118937065
XM_036990060.1 mRNA downstream 509675 30972693 ~ 31020075 (+) False LOC110533644
XM_036990059.1 mRNA downstream 509676 30972694 ~ 31020075 (+) False LOC110533644
TU997180 other upstream 410847 30020641 ~ 30050053 (+) False G876079
TU997186 other upstream 438610 30021091 ~ 30022290 (+) False LOC110533629
TU997187 other upstream 438610 30021091 ~ 30022290 (+) True LOC110533629
TU997196 other upstream 480270 29919276 ~ 29980630 (+) False LOC110533619
TU996858 other upstream 878370 29581126 ~ 29582530 (+) True G875776
TU997763 other downstream 285488 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other downstream 285488 30748506 ~ 30755613 (+) True LOC110533640
TU999056 other downstream 742065 31205083 ~ 31205418 (+) True G877809
TU999098 other downstream 778792 31241810 ~ 31322600 (+) True LOC110534883
TU1001241 other downstream 2518848 32981866 ~ 33045499 (+) False LOC110533671

Expression Profile