RNA id: XM_021618051.2


Basic Information

Item Value
RNA id XM_021618051.2
length 4005
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110533641
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 30771453 ~ 30950758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCAGTGATTTGGATGTTTGTTTAAACGACAAAAATAGCGTTTTGTCCAATAATAATTAGGACTAGGTTATTTCACTGTAAATATTAGTTCCTCTTGTTTCCCACAGACAATTGTAGTAAAACATGGGCACTTTAGCATATGTTTAGCCAAATGGGCAATCTTTGTGGTTTAGTATCACTTTGCTCTAAACATGTATTTACCTACCGTAAGTAACATGAGGACACAAGTGAAGGTGTTCAACATTTCTCTTGATGGGGATACGCCCACTTGAGTATTCCCTGTGCGCAATGACGCGCGCGCTAACGTGGACACCTTTGTTGTGTTGCCCACTGGTTACCACGCGTAACCAAAACCACTGCTTCTCCTGCTGAACAAAGCGCGGCGACTCAAATACCCGGACCTATACACAGCAACACTAACATATGTTTTATTTTGCATCTCGTGAGTAAAATAAATTCGATTAAGATAATTTGATAGTTCCATATTTCCATGCGGCGACCATCTACGGAATGACAGTTGCGCAACTCTGTTTCGGGTGTGACAAACAGCATTTGTGACTCATATTTCTAGATTCTCAAGTATAGTCGCGGATAGCCTATTTAAAGGAGACATTACTTCTTGTTGAGGTGGCAGCTTGTTTACCTAGAAGTGCTCATGTTTGACTCTTTTATGAAATCACGAGCCGATGTTTGGGTCACTGGAATATCCTTTTAAATCATCACGGATAACAAATTGTTAACTAGTTCTGTTGCTGCTGGTGTAAAATTTGTTGGGGAGAGCTTCAGTTGATCTCTTCTGGGTGTGTGAGCTCCAAATGCATTCATTGCTGGATCGGAAGAAGAAAGAAGCCGGGGTTGGGATCGATCTGTCTCTGAGCTACTCGTTGCCCCAAGCTGCGAGGATGTTCAGCTGTGTGGGCTGCTTTTGGGTCTTCCTGTCCTCCGCTCTGGTCGCTATTTGTAGTTTCAGTTTTATATCATCTGCGTGGATTGTCAAGGACCATCTGAAAAACAAGGACTCGGTGAGCTTCGGCTTACTTTGGCACTGCTCCGAGTCCCTGGACCATATGTACAGATGCTACACCTTCGGAGGACTCGGGAAATTCGCTGAGATTCCATCCAGCTCGTGGCAGACGAGTGTAGTGCTCTGTTCTGGAGGATGTGCCGTACTGGCAGTCAGCTCCCTGTTGGCCATCATCACCATCTTCTTGCCCAGCGGAGGCTGTGAGAGGAGGATTTGTACACTGGCTGGATACATGCAGATGACTGCGGTGTTCATCATGGGGTCTGGGCTGCTGGTCTATCCCTTTGGGCTGAACTCCACCCTGGTGAGGTCCTTTTGCGGGGACTCAGACATCTACTATGCCGGGGACTGCCAGATCGGCTGGGGATACATGCTGGCCATCGTCGCCGTCATGCTCACACTCTTCCTACCCTTTTTCGCCAAATACGCACCAAAGGAGCATCTGTCCCCAACCCCACTGCCCACTCTCTTATAGGACAACAACTGACCCCACCTTCCCCAACCTCATCCAGTCAGTTTGCTACAGTACTTCCTACTTCCCTGTatgatggagatgggagaaacccCTGCATCCACTTCTTCAGTAGGATGCCATTTTAAAAAGCCCTGCCTCTGACATACAACTAGGCTATACCCAACTGTGAACAACATTTATGTACTGTCTTCCTTCATACAAAAGCTATTTCTTTGATCTAATAATTGACCTAATTGAATGGAACTATGttctgttaaaaaaaaatctcccaATAATGTCAAACGTTAACTCATATTGTTATGACTATTAATTCACATTTACTGTCAATTTGTGACTGCATTTCTGGTTAGACTTATTTCATATTCAGTATCTTTTctggaaaaaaaatacatttgaaagaaACACAAGGATTGACAACAACTCCCTCTGTTCAGATGGACAGAAGTATACAGCGCATAAACATTCCTATCATGTTATACATACAACATTGGTTTAATATTACTGTAACCAGACAGAGGGTGATGGTCAGGACTAGAACCATAATATGAATCCATGGTGACATTAAGTGGGCAATAAGAGTGGTCATTAAATATATCATTCCAGAATAATCAGGGAGTTGTTTGCAAAAGAGAAGGTGTGAAAATAAGGAGAATCTTAATGAGAAGGTAAAGTATGGCCTGAGATTAACAGACAATATGAGACATTTCTACAGTTATCAAAAAACATGGACATGCTTCTATCTCCAATGGATCAATGCGGATTTGGCGAACAGTAAAGACAATGAGAGACCCGTTTGACATCAAGACAAAGCGAGGATTAGAAAGGATATGAACACGGACTCAGGTCTCAACAGTGAGCGCATCAAGGATTCTGTCCAGTGGAGTTTGAGGAGAGTGGATTGTATAAAGGTTTAGATCCAGATGACGTTTTTATCCAGCATTGAACACTGACTGAATGGATGTCATTAGATGGACATGTAGCACAGTGAAAAATGACCCTTGGGGACTCACCATCTGACTTAGCCTACATcttcaacatggttttaaatgGACTATTGGACAGTAAAAATTCTAAAGAAAGAGTTGAATAAATATGTTTCAGTGAAGGAGCTGTACCAAACAATATAGAAGTGTCTGACCTGCCTTTAAGACAAATTAATATAGATAGGTGTGcatagtaataatataatactTATACTTACATCTGATAGTTAACTTTTGAAGACATATGAAAAGCATTTGTTATACATTTTATGTTGGGATGACATGACATCCTTCTACCAACCTTTTCCCAGAGTTCCTAGTGTTAATATGGTTGTCTTGTTAACCCAAGTCATTATTGTTTCAGTTTTTACACCAGACAATACCAGGGTTGGGGTTAATTCAACAAATTCTAATTAAATTCCCTTTCCCTGTAAATTATATTTGATTACATTTAAAGTCCAGGTCGTTGATTCCAGTCCTTGAATTTAGAGAATTCAATTCCTTTCAATTCCAATGTTAATGATTAAATTCCCTATCCAATAGGATCCTCAACAATTCCACAAATTCTAATTCAATTCCCTCAGGCTGATCATGTCACAGTTCAGACCGCCCAGCTAAActggaaatatagaaatacaagttgaaatgatttaaaacaaATAATGCAGTCAATGTTTGATACTATGTGCATTCATTCCATTAACTGGGAAATGTACAAATATTGAATTCCAATTTATTTCAATTCCAAAGATTAAATGTTTTTACAATTTGAATTCAATTCCAATTCAAGCAGTCCAACAGTCTAATTACAATTCCATAACTTGAAGATAGttgaaattcaaattaaattaaatgtaaatTCTCCACTTCATGAGTGAATTCAAGAACTGAATTCGAATTTCACATTAAATAGGAATTAACCCCAACACTACGCAATATTAGCTATACACTATAATTCAGGACTACATTAAATCAGGCTAAAGGCAATTAGATAAGACAGCATTGTCTAGAAATGATTGACTAGAGTGCAGATGAAGTTGTGGTTAGTTAATAGTAAAACAGTTTATCTAGATTAGATGATCTGCTCTGACCATACCAACGTGTGCCTTTATAACAGAACCAAGACAAGTTACTTCAATACTATTAATATCAGGTTACCATCTACATCTGCTTAAACTGTGGATATTGTAGTGTAAAACAGTTGTAATTTTGTTATTTTCTCTATGTGTGCTGTACTTGTCTTGTATGTGTTTCAAGATGTGCTTCTGAACATTAAAATATTctctagaagaaaaaaaacatatgtcTTCTAAAAGCTTGAAGGTAATGACAGATAGAACAAACTGTACTTGTGTTGAATTATGCTGCTGACACTTTGCCAGTTTATTCATAAGAGGTAAATAACTGTAATCACTAAAAGGTTgcgacatatacagtggggcaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaatttccatcataggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU997749 lncRNA upstream 45631 30724212 ~ 30725822 (+) True G876601
TU997550 lncRNA upstream 312081 30459150 ~ 30459372 (+) True G876424
TU997534 lncRNA upstream 336878 30434346 ~ 30434575 (+) True G876410
TU997522 lncRNA upstream 344537 30417673 ~ 30426916 (+) True G876398
TU997484 lncRNA upstream 381715 30369252 ~ 30389738 (+) True G876361
TU997970 lncRNA downstream 130514 31081272 ~ 31081812 (+) True G876813
TU997906 lncRNA downstream 169077 31119835 ~ 31122918 (+) True LOC110533645
TU997908 lncRNA downstream 201095 31151853 ~ 31153059 (+) True LOC110533646
TU999023 lncRNA downstream 226215 31176973 ~ 31177262 (+) True G877782
TU999024 lncRNA downstream 226688 31177446 ~ 31177676 (+) True G877783
XM_021618050.2 mRNA upstream 122 30748439 ~ 30771331 (+) False LOC110533640
XM_021618042.2 mRNA upstream 307475 30460900 ~ 30463978 (+) True LOC110533637
XM_021618043.2 mRNA upstream 308435 30460900 ~ 30463018 (+) False LOC110533637
XM_036990044.1 mRNA upstream 571504 30081080 ~ 30199949 (+) False LOC110533631
XM_036990060.1 mRNA downstream 21935 30972693 ~ 31020075 (+) False LOC110533644
XM_036990059.1 mRNA downstream 21936 30972694 ~ 31020075 (+) False LOC110533644
XM_036990061.1 mRNA downstream 21936 30972694 ~ 31020075 (+) False LOC110533644
XM_036990062.1 mRNA downstream 21936 30972694 ~ 31020075 (+) False LOC110533644
XM_036990063.1 mRNA downstream 21936 30972694 ~ 31020075 (+) False LOC110533644
TU997763 other upstream 15797 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other upstream 15840 30748506 ~ 30755613 (+) True LOC110533640
TU997180 other upstream 721400 30020641 ~ 30050053 (+) False G876079
TU997186 other upstream 749163 30021091 ~ 30022290 (+) False LOC110533629
TU997187 other upstream 749163 30021091 ~ 30022290 (+) True LOC110533629
TU999056 other downstream 254325 31205083 ~ 31205418 (+) True G877809
TU999098 other downstream 291052 31241810 ~ 31322600 (+) True LOC110534883
TU1001241 other downstream 2031108 32981866 ~ 33045499 (+) False LOC110533671
TU1001378 other downstream 2180387 33131145 ~ 33134914 (+) True LOC110533672
TU1001481 other downstream 2350007 33300765 ~ 33301738 (+) True G880069

Expression Profile