RNA id: XM_021618069.2


Basic Information

Item Value
RNA id XM_021618069.2
length 6251
RNA type mRNA
GC content 0.55
exon number 19
gene id LOC110533651
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 31744589 ~ 32229047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACTGAAGAACGGACTGGGAGAGAAGAGCCCCTTTGCTTCCTTGCGGGATTTATTTGTTTGTTACATTTTTCATTTTCTGTTCTCTTGTATTGACCATTTGTATCCGAATGCCTGCGACTTGCCCGGACGGTCCCCACTTTCAAGGGAGGGAGAGTTGGCTGACATGACAGCATGTGAAGAGTGGGGATTCCTTAAGAAGAAGGATCAGGATGTGGCTTTTTACAGTTGGTTCACCATGGCAGGACATGTCCAGTGATCACACGTTCTGTTCCAGTTAAAGATTTGTCTTCTTTTTATTCTCTTTTTGGAGTTGACAGCCTAGTTACCACGTCTAACAGACTCTATTACCCTTTGCCTGTCAATGGATTTCATGGACACCGTTGGGAATCTTTGCTTGGAATCTGCTGCTGTGCTTTCAATGACTCAAGGCATTCTCTACTCCAGTTTATGCCCTTTGGATATTATCTGATTGCTTCTTTTCTGTTGGATTTCATCCACTAAGTATCTATACTTACTACTTGTTGGATATTGTTGGGAAATATCTGTTGGGATTTATTTCTGCTGGAAGTTCAACTGTGCCAGTGAGTGCCCTTGATAGGGTTGATTCTCTGCTCTGCTAGAGAAGTCTTTAGGTGGGCTTTTCCTCTGAAGAAATGGATGGCCCACGGTCCAGTGGGCTCCGCAAAAAGAGGAAGTCTAAGTCCGAGAGGGATCGGGGACGGAGATCAAATGGGATAAGGAACAACAACCATAAGAGGGGGGGCTCTGTTGGGCTGCACTTCTCCTCAGAttcagagagggaggaaggagacagGAACGCCTCTTCCTCCCGTCCAAGGCCCcccaggagaaagagaaaggagtcTACATCCACTGAGGAGGACATCATAGACGGCTTCTCCATCTCTGGTTTCATGACGCTGGAGGCGTTGGAGAAGGACCTGTCCATGAAGCCCCAGGAGTGCAGGGAGAACCAGGAGAACCATAAGGAGAACCAGGCGGGCCCCCTGCACAAGAAGAAGCCCCCCAGGGTCCCGAACGGATTCAGCCTGGACTCCCGCAAAGCCCACAACAACCACCTtaacaaccaccacaacaaccaTAGCAACCATCACCAGCATTCTGACCAGGAGAACAACAACCCACGCCTGGCTCCTCAGACCAACGGCAAGAAGAAGAACAAGAACAGCCTGCAGAAGAAACACAGGCCACTGAAGCCAGGCCAGAACAACTGCAAGGACAGCGACAGCGAGAGCGTGAGCGGAGGGTCCAAGCCTTTTGTCGGAAGCAGCTCCAGAGATAGGCTGAGTGACTGTGACAGTGAGAGCGACCAGGAAGACAAGggCTCTGATGCCAGCTCAGAGAAATTCTTCAGCACTGCTGCAGTTAAAGTTCCAGATTTCAGCGTCGATGCGCTGTCCACCAATGACATCCAGGAGCGTGGCGGCCTGGGCCTCCCCAAGGTGTCAGGCCTAGAGCGCAGCCAGGAGAAGAGCCAGGAGAGCTGCAAGGACGTCCCTGTGCCTCCCCCCGCTCCCAGTGCCCCCAAGCAGCCGCTACCCCCGCAGCCCTATACGTCTGGCCGCCCTCGGCCCCTGCCTCTGTCCCTACCCACCTCCCAGGCCCAGCCCTCTCTCCCCGGCCCCCTTCTGGCACAGGCCCCGGTCCACCAGCCCCCACGCTCAGAGGCTTCTCTCAGGCCTCAGATCCCCGCAGCCCTGCCTCTCGCTCAGGGACCAGAGCCTTCGCAGGCCCCCCCGCCCAGGCCCCAGCACCAGCCTGAGTCCCTGTCCCGGCCCCAGCGCCAGCCTGAGCCACTGTCCCACCCCCGGCCTCCGCCCAGTCTGCACCCACACCCCGCCCTACTGTCCCACCACCCCAGCCAGAGCCAGGCCGGGCCTCAACGCCTCCCCTCACACTGTGGGGCCCACCCTCGCCCCCTATCTGCCTACAGCAGCAGCCTTAGCCTTAACGGCCTCAGCAGTCGGAGTAGTACCCCGGGCGGTACCAAGCCCCACGGCCCTGCTGGTCCGTCCCCACACCTACCCCATCTCCCACCATCCGGTTCCGCCACTGCAGCCACGGCCTTCCCCCTGCCTCACCCAGCCAATCAGATCGCTCCCCACGGTTTCCCCCCCGCCCTGCAGTCCTCGCCACACCCCCACCACCCCAATATGTTTGCGCCTCCACCAGCCTTGCCCCCACCTCCGCCACTGACGTCTAGCACCCTGCCAGTCCCCGGAGGACACCCCGCCGCTGGGACGCCCTATTCAGaacAAGACCTGCTGCGCCAGGAGCTCAACAACCGTTTCCTCGCCTCGCAGAGCGCCGACCGCGGGGCCTCCCTGGGCCCGCCCCCGTACCTGCGCACCGAGCACcaccaacaccagcaccagcaccagcaTCAGCACCAACACACGCACCAGCACACCCACCAGCACACCTTCACCCCCTTCTCCCACGCCATCATGCCTACCCCTGCACCCCCCATGGTGCGTACCCCAGCCAGAAATTTTGAAAAATTCCCAACAAAAGTTGACCCTTTCTACAGACACAGCCTGTTCCACTCCTACCCCCCGGGCGTGTCCGGCATTCCACCGGTGATCCCTCCAACCGGGCCCTTTGGCTCGCTGCAGGGGGCCTTCCAGCCCAAGacttctaacccactggatgTGGCCTCAAGACCTGGAGCAGtcccacacacactcttacaGAAGGACCCCAGGctaaCGGATCCGTTTCGGCCCATTCTCAGGAAACCAGGGAAGTGGTGTGCCATGCATGTCCATATGGCCTGGCAGATCTACCACCACCAACAGAAAGTCAAGCAGCAGATGCAGGTCGACCCGCACAAGCTGGACTTCGGGCTCAAGCCGGAGTTCCTGAGTCGACCCCCCGGCCCCAGCCTCTTTGGCGCGATGCACCACCACCACGACTTAGCACGTCCCGCCACACTCTTCTCAGCAGCAGGTTCTACACACCCGTCAGCCGGACCGTTCGGCCACCCTCCCCACCACCCCGGCAACTTCCTCACCCCTGCACCTCACTTAGagcCATTCAGTAGGCCTCCCTCGTTTGGAGGTCTCTCATCTCTCAGCACAGCAGCCTTCGGTGGGCTTGGAAACCCAGCACTAAAATCTCTAACAGCGCCTAACTCTGTGTTTGGCCATAAAGACAACCCCAATGCACAGCAGCACTTCAACAACAACCACGAGCCATGGAACCGGCTGCACCGCACACCACCCTCCTTCCCCACCCCTCCGCCTTGGCTCAAACCTGCCGACTCGGAGAGGAGCGCCTCAGTCAGCTcccatgagagagacagagactcagACAAGCGAGACACGTCCTCCATCAACAAAGACGACAAGGAGAGGGAAGCCATGGAGAAGCGTCACCAGAGCCATCCGTCCCCAGTCCCCATTAACCCTATCAGCCAACTGGGTCACAGCCGTCCCCCAGAGCCCCAAAAGAACCACCTGCCCCCCAGTGAACCCCCCAGGGACAAGGACAAGCCCAAAGACCGAGACAGGGAGCGGGAGCACCCCGACTCCTGGAAGCTCAACGGCACAGACGAGCACAAACTCAAAGAGAATCACCACAGCGACAAGGACACAACGCCAATCATCCACGACGGGCGGGTGACTGAGGACAAGGCCAACGGTAGAGGAACGACCTCACCCTACATCCGTCAGACCAGCCTGGACCGGCCCAACGGGGGgctggggaggggggagagggaggcccTGATGGAGAAGAAGGGAGAGCTGCCTTCTCTCTACGAGCACCACAAGAAGAACAACAACGAGGTGAAggtaaaggaggagaggaaagaggagcagGACAGCCCTACGGACAGGGACAGACCCCCCTCTCACCCTCACCTCCACCTGCCCCAGGTGCCCCTCACGCCCAGcctccacacccaccaccaccccccttCCTCCATGGCGATGCCCATGGGCATGGCGGGTGTCCACCCAATGAACAACATCAGTGGCCTGGAGAGGACTCGAATGGTGGCCCCCTTCTTGGGCATCAGCCCAATTCCGGGGGCAGAGAGGTTCCCCTACCCAGCCTTCCACTGGGACCCCATGAGGGACCCCTACAGGGGCCTAGACATCCACAGACGGGACCCTCTGGCCAGGGACCTGCTGCTGAGAAACGACCCCCTGCATCGGCTGGCCGGGCAGCGCCTCTACGAGGCAGAACGCTCCTACAGGGACCGAGAAGCTCATGACTTTAACCGCGACCACCACCACCCTCTAGCCCTGGAGCAGCGCCGGGAGCAGGAGGCCCGGGCACACTTAGAGGAGCGTGAGCGGTTGCACATGCTCAGAGAAGACTACGAGCACGGCCGCCTGCATGCCGCAATGCACCACCCGGCCCTGGACGGCCACCTGCCACACCACCACGCTGGCCTCATGGTCCCCGGATTACCCAGCATGCACTACCCCAGGGTCAGCCCTTCGGCCGCCGCTGCAGCTCACGCCGCTCACCAGAACGGTATCCTGAACAAAACCCCGCCCACAGCCTCCCTGAGTGCCCCGCCCCCCCTCATCCCCACGCTGGGTGCCAGGCCTGGCTCCCCCAGACGGACTACGCCCCTCACCACAGACATCAGAGACAGACCATCAGCACACAACCACAAAGACATAGAGGCACGGTGAGCAGAGTGGGGCGCAATCCTCACCCTGGATTGGAGGCAGACTACAGGCATACTCTGCCCTGTGCCTCACACCAAGCACTTAGctttgggaacagcagactgtacCATAGCTGTGAATAATATGTGGGGGAGAACACCCACAGATTATGTTtttgtaaaaaaattaaaaagttgtgtgtgggggggttgctCCAGTTTGCTCCTGCTTTTTGTGTGTATTCTTTCTCTTGTACAGAACGTGTCCTGGACTACCCTGAAGGTGTGTAGGGCAATGGAAACGGCACCCTCACAAAGACGTTTTGGAATGTACAGGTACTTCAATGCATTGACAGGCAGCAAAGTGTGTAGATATGTGTACAGTCGACATGCTCACTCCTTAAGGAACAAATCATGGTACAAATATGCAAAAGGGTGTTTTGAAAGCTTTACTTTGAACAAATGTAAATAGAGGACTATTATTAATGAGGAGGAAGTTCAGAATGTGCTTTTTGCTGATTGGTTTTAGCTTGACGCAGCTGAAAAGGTTAACATTGTACCACCATGCCCCACATTCAACTATGCAACAAATGTCTTGGCTTCTACTCTGAAAGCCAGCCTGGTCACCATCCCAACGGACTCTGACAAAACTGTATTCTCTCCACAACCTAGACCTCACAAACCCACAGTACTCATAGAAAATGTGCAAACGTTAAACAATTTTCTTAAATATGATACAAAAGTGTGGTAACAATCCTTAAAATTTATATTATAAAGCTATTCATTTTGTAGAGGAATTCCAATGCCTGAAgtcacagtggttcccaacttttttcccttactgtaccaccaagtgaattttgctctgcccggagtaccccctcatgtgcattttaccagtaagccTACGGTCTAAAGAGTCTTCACAAGTACCCACTGGATAGGCCAAGTATCCCCTGGATAGGCCAAGTATCCCCAGGGGTCGTAGTATgtctggttgggaaccactgacctAACAGAGAAAGGTTGATAGAAAGTGAGAGGGATCACTTACTCCAACAACTCAACTCCTACCACCATTCTTGTTTTGGAGAGAATACAGCACATTTACAAAAAGACCCCACATTTTCCCCTCTGAAggagtgtacagtatgtgtttggaAATAAGTTATGTTGGTCTAACAGTGTATTAAAGTGCTATCCTAAGCTGTTGTatctacaaaaataaaaaataaagacaaaaaagCCCGTCTAAACTATGGACAGTTTGTTTCTAAAGAGCAGATATCTATTTTAGTAGTCCACTGAAGGTTTAGTTGTGCGCTTCAAAAACTCTGTGAGAGCCAGATGTTGTGCAGTGTTTTTTTTAACCCACATTAAAAATGTCCACTGGAGCCGTAGTGGTTAGTCAATGCATATTGCAAAGAGATTGTAAACAAGAAAAACAATTTTGCTGTTTAtcatgtatgtaaaaaaaaaaaaactgtctttCTAGAtgagaaacaaaacaaaacaaacgatGCGACTGAATCTTCAGCATGCTCCTCATTTAAACGTGTGTTATGTAAATTGTGCCATGTTATTAAAAAATGTGAACTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU999250 lncRNA upstream 234358 31489850 ~ 31510231 (+) True G877987
TU999225 lncRNA upstream 295434 31441636 ~ 31449155 (+) True LOC110534886
TU999142 lncRNA upstream 396167 31347894 ~ 31348422 (+) False G877888
TU999139 lncRNA upstream 396167 31347976 ~ 31348422 (+) True G877888
TU999148 lncRNA upstream 418059 31307440 ~ 31326530 (+) True G877894
TU999766 lncRNA downstream 11942 32240989 ~ 32241240 (+) True G878479
TU999770 lncRNA downstream 16774 32245821 ~ 32246128 (+) True G878483
TU999843 lncRNA downstream 129145 32358192 ~ 32359101 (+) True G878551
TU999852 lncRNA downstream 149275 32378322 ~ 32378955 (+) True G878559
TU999988 lncRNA downstream 313145 32542192 ~ 32542721 (+) True G878669
LOC110534886 mRNA upstream 291706 31386220 ~ 31452883 (+) False LOC110534886
XM_036990067.1 mRNA upstream 362011 31241426 ~ 31382578 (+) False LOC110534883
XM_036990068.1 mRNA upstream 362011 31241426 ~ 31382578 (+) False LOC110534883
XM_021618063.2 mRNA upstream 594678 31133900 ~ 31149911 (+) False LOC110533646
XM_021618087.2 mRNA downstream 256961 32486008 ~ 32488013 (+) True LOC110533658
XR_002475008.2 mRNA downstream 264670 32493717 ~ 32497386 (+) False LOC110533659
XR_005053619.1 mRNA downstream 264821 32493868 ~ 32497386 (+) True LOC110533659
XM_021619809.2 mRNA downstream 276322 32505369 ~ 32519387 (+) True LOC110534887
XM_036990079.1 mRNA downstream 336843 32565890 ~ 32591366 (+) False LOC110533662
TU999098 other upstream 421989 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 539171 31205083 ~ 31205418 (+) True G877809
TU997763 other upstream 988933 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other upstream 988976 30748506 ~ 30755613 (+) True LOC110533640
TU997187 other upstream 1722299 30021091 ~ 30022290 (+) True LOC110533629
TU1001241 other downstream 752819 32981866 ~ 33045499 (+) False LOC110533671
TU1001378 other downstream 902098 33131145 ~ 33134914 (+) True LOC110533672
TU1001481 other downstream 1071718 33300765 ~ 33301738 (+) True G880069
TU1001972 other downstream 1815447 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 1815447 34044494 ~ 34047724 (+) True LOC110533688

Expression Profile