RNA id: XM_021618092.2


Basic Information

Item Value
RNA id XM_021618092.2
length 2903
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110533663
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32599894 ~ 32635095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcagtacctgatAAATACGTGGTTGAGAGTGCTTTCAGACCCCCGCAGGCTGACGTGAGAAAAATAATGTTTTCGAGTAGCGCAATTTGCATCCTCTTCGGTTCTTCTACAGGAGCGCTTCGGTTTGGACCCAATACACCTACCACCCTTTCTCACGTACTGACTTTGAACTGGCTCCTCCCATACGGGTTAAATGCCGCTCAGTTATTCAATTTAATGCAGTCATTATAGAGGAACTGTAGAGTTGATCAATTTTATTGTAGTACATTTTTCCAAGTATTGTAACCTGTTAATTCCCGGAGCCACAGTTATGAAGACAATACTTGCTGCCTACCCCGGTGTCCTAAAAGGCACCGGCTGCAGCATCCTCTCCGCCCTGCAGGACCTACCCTCTGCTCCTTGGACTGCACTCCGATCCAAGATGGAGAAACACCTTCAGGTCATCTCAGTTCTGCAGTGGGTCATCAGCTTCCTCGCCATGGGTGCCGCTGGCACTGTGCTCTTAATCTACATGTTCTGCACAGACCTCTGGGTGATCGCTGCCATGTACACTGCCTGGCTTATCTTCGACTGGAACACCCCCAAACAAGGTGGCAGGAGGTCCTCTTGGGTGAGGAACTGGACCATGTGGACTTACTTCAGAGACTACTTCCCCATCAGGCTCATCAAGACACACAACCTGCTGCCAAGCCGAAACTACATCTTTGGCTACCACCCCCATGGGATCTTCTCTTTTGGAGCCTTCTGTAACTTCGGAACAGAGGCCACCGGCTTCTCTAAGAAGTTTCCGGGCATCAAGCCTTCCCTGGCCACCCTGGCTGGAAACTTCCGGATGCCAGTCTTTAGAGACTATCTCATGTCTGGAGGTATCTGCCCAGTGAACCGTAACTCCATTGACTACCTCCTCTCTCAGAATGGAACTGGCAATGCAGTGGTCATTGTTGTCGGGGGAGCAGCTGAATCTTTGAACTGTGCTCCAGGAAAGAATTCTGTCACCCTGAATAACCGCAAGGGCTTTGTGAGGTTGGCCCTCCAGCAAGGgtctGACCTGGTACCAGTCTACTCCTTTGGGGAGAACGATGTGTACAAACAGGTGATCTTCGAGGAGAGAACCTGGTGGCGGCTGGCTCAAAAGCGACTGCAGAAGATTATTGGTTTTGCGCCCTGTCTGTTCCATGGCTGTGGCTTCTTCTCCTCCGATTCCTGGGGAATGGTGCCTTACAACAAACCCATCACCACCATCGTGGGTGAACCGATCACAGTGCCAAAGATTGAGCAGCCTCCTCGGGATATGGTGGATCTGTACCATGCCATGTACATCAATTCCCTCACCAGCCTCTTTGACAAGTATAAGACCCGCTTCGGCCTGAAGGAGAGTGACATCCTGCACATCCATTGAGAAAGGGTCAGCTGTGGCAGCTGTCTGTTCAGCCCTGCCCCTCCATTCACTTGCCTGGCTCTGATTGATTGTCTCTGGAATTCAATCTATATACATTaagctgtgtgtatgtaaacCCACCGCGCTCTCAGCAACACTCACGTCGGTCCTCCACTCAGGATGAAAATGGCAGGTCTTAGGTCACCTTACTATTCTCTCTGACCTAGTCACTGTCAATGGCAAAGTTGACTAACTTccatttattgaatattttatTGAGTGTATGACACATCTATAGATGTGTTCCATGACAGAAAAGATGAGGGAGTATAGTTAAGGTATGATCCCTTGCTTTAATGTGCAGTGGAACTCCCACTAGGTGGCACTAGAAGGttacacaagacacacacaagcACCATCTTTGTTTCCTCCATGCATCCATGTCATTTTCACTTAGAATAGGCCTGTACAACGAATGTGTTAAGTGCCCCGAAAGGTAAATATAGGATGATGTTTTGAGAccttactttttgttgttgttgctaaatGCACAAACAATGCAATTGTAAGGCTGTTGCCTTAGTGAGATGTTGATAGTGTGGTTTATTGAGCCAACGAGCTGATGGGTGTCCCCTCCCCACACATGCACACTTCATTGAAACTTGAAAGTGAAGGAATTCTATTGAATGGATTTAGATTGTGCATATTGGTAATACAATCTGATTGTGTGATGGAACTAAGTATTAATTGtattttgtaaataagaatattttCAATGAAAATTAATATATTGATGCACTTTTTGTATTTGTGACAACCCTCTGAGGTATTTCTCTAAAACATGCCTTTGAAAGAGTCCTATGTCAAATTTGCCAATTTCTAAGAGAATCAGTATGGTGCTTTTGTCATTTAACCTTGACCTGTGTTTTAGTTTTGTTGTACATTTCTCTACATGAGTGTGTTGACTGGGTTGCAGAGTGTTACCTAGTGCATTGAGGCCCCatgtactgtagtgatggtgATGTAAGAACAATTTCAGGGTGAAGAACATTTCTTTCCTTCTACCCAGAGGGCAGATTACTGATTCATGAAATTAAGAGATTGCAAAGCATATGccttattttaaaaaaaactacAACTCAAACTTCTTAGGGGGCTTCTACTCAATTGAGTAAAATGGCAAAGGGGTTGCTATCACAGATTTGAATTAGAGTATAAAAGTCATGAATTCCCCCAGTAATTGCCAAGAAGTGTTTGAGATAAATCATTTTTTCATATGGGGCATATCAAGTCCATTATACAGCCAATGATCCTAGGTGAAGAAATGTATGTATGTTGTATATTATGCAAGATAAAAAGACTACAAGATTTCACCTCATGGCAAAATAATTGAGATTGGTGATAAATAGTGTGTCATTCAAAAcgtaattttttttttgttgctttttgcAAAGAGCAGTGAACATCCTCTCCTAATTCATGTGCAATAAATACAGCAATAAATAGCAGCCAATGCATGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU999988 lncRNA upstream 64311 32542192 ~ 32542721 (+) True G878669
TU999852 lncRNA upstream 228077 32378322 ~ 32378955 (+) True G878559
TU999843 lncRNA upstream 247931 32358192 ~ 32359101 (+) True G878551
TU999770 lncRNA upstream 360904 32245821 ~ 32246128 (+) True G878483
TU999766 lncRNA upstream 365792 32240989 ~ 32241240 (+) True G878479
TU1000042 lncRNA downstream 147361 32782456 ~ 32782831 (+) True G878720
TU1000117 lncRNA downstream 153094 32788189 ~ 32788420 (+) True G878792
TU1001182 lncRNA downstream 181854 32816949 ~ 32817180 (+) True G879788
TU1001227 lncRNA downstream 241150 32876245 ~ 32879454 (+) False G879832
TU1001228 lncRNA downstream 241150 32876245 ~ 32902669 (+) True G879832
XM_036990079.1 mRNA upstream 15666 32565890 ~ 32591366 (+) False LOC110533662
XM_036990080.1 mRNA upstream 15666 32582877 ~ 32591366 (+) True LOC110533662
XM_021619809.2 mRNA upstream 87645 32505369 ~ 32519387 (+) True LOC110534887
XR_002475008.2 mRNA upstream 109646 32493717 ~ 32497386 (+) False LOC110533659
XM_021618096.2 mRNA downstream 4475 32639570 ~ 32779932 (+) False LOC110533664
XM_021618097.2 mRNA downstream 4477 32639572 ~ 32779932 (+) True LOC110533664
XM_036990084.1 mRNA downstream 374292 33009387 ~ 33041014 (+) False LOC110533671
XM_021619830.2 mRNA downstream 426316 33061411 ~ 33063183 (+) True LOC110534913
XM_021618110.2 mRNA downstream 495748 33130843 ~ 33140211 (+) False LOC110533672
TU999098 other upstream 1284432 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 1401614 31205083 ~ 31205418 (+) True G877809
TU997763 other upstream 1851376 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other upstream 1851419 30748506 ~ 30755613 (+) True LOC110533640
TU997187 other upstream 2584742 30021091 ~ 30022290 (+) True LOC110533629
TU1001241 other downstream 346771 32981866 ~ 33045499 (+) False LOC110533671
TU1001378 other downstream 496050 33131145 ~ 33134914 (+) True LOC110533672
TU1001481 other downstream 665670 33300765 ~ 33301738 (+) True G880069
TU1001972 other downstream 1409399 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 1409399 34044494 ~ 34047724 (+) True LOC110533688

Expression Profile