RNA id: XM_036990084.1


Basic Information

Item Value
RNA id XM_036990084.1
length 7198
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110533671
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32981866 ~ 33045499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacaccacacacacacgttctcacACAGCGGAGCGTAGCTGAGAGGCAGGGACTGCAGCAGTATGCACCAGCCACGTCTGATCTGTGTGGAGACTTGAGGAAGGAGAACTAGGAAGAGGATATAATGTAGCAGTGTCTTACACAACCCAACCCCCGTGCGTACAGTAGCTACATCTCTACTCTGCAGCAGTGGCAACGGTGCATTTCAAGAGTGGACAGCTTATGTTATCTGCCCCCCTCTGACTGCACTGCCTCTGCATCCATCTCCATTCACTCTGCTCCTCCCATTCCacatcttcatcctcctcttcctcctcccaacTACGGCAACATTAGGCAGGACCACGGACCGTACGAGATTGCCAACGCTGATCACAGGACCCTCAGGTTTGTCCTGTCTGATGGAGTCGTGCTGGTTATGCTAGATCATCATCACCTTCATTAACGACTGGATTCTAATCGAGCTCAGGAGACAAGGAAAGAAAAAACATCCCCCAAAAACGAAAAAGGAGTGTTGGATGTTTGTGACGCTCTTTGTCGGCTCTGTTGGGTTGTTGGCTCTTTTCCTGTATTTGCTTGGTTGTTTTTGCCTTCTCTGAGACCGGCTAGCAGGCACTGCAGCACCAGGAAGGACTGCAGGAGCCGTGAAGTAGTATGGCATGAGGACCCAGGGGCGAGCGAATCGGAAGGGCTTGAGCTACCATTACTGCTGCTGCTGAGGTGCTTATCttaattttttttctccagaaaggGCATCTGGAGGGGGCTGGGTTGGGGTGGGTTGTGACAGTGAAGGTACCCGGGACCCTACAGAGTGGAGTGGGTGTCTCTGGCGTAGAGGAGCCACGCAGATAGGCAGGACGTCCtgtgggaaaggaggagagaagagaggaagaggggctgGCTCAGGCTCGGGCCCCTGATGGTGGCTATTTTTGTCTCCCCTAGCTGAGTGATTGGGGACAGCAGGTAAAGGAAAAGATGCTTATGGGTGCGGGACGAGACACGGCGCGGGATGAGGCCCAGAAGCTTCACAGGAAGTGGCTGAAGCACCAGGCCTTCATGGCCGAGCTGGCCCGCAACAAAGAATggctggccaagatagagcagGAGGGCCAGGAGCTGATCGATGAGAAGCCGGAGCTGCGTTCGGTGGTGCAGCAGAAGCTGGAGGAGATCAGGGAGTGCTGGACGGACCTGGAGACCACCACCAAGGCCAAGGCCCGGGCTCTGTTTGAGAACAACAAGCCAGAGCCGGTGGTGAAGAGCTACTCAGACCTGGACCACCAGCTCTCTGGCCTGGAGAAACAGCCCCCCCAGCTGGAGCAGGCTCATCACCTACCCACCTTCAACGAGCAGCTGCAGAAATTTCAGTCTCAGATGGGGAACTTGTACAAGGACGTAGGGGAACTAGGGTCCCTCCAGGGGGTGTGCCTCCCCCAGCGAGGCAGCCTGGTGAAGGGTGGCGAGGGAGAAGGGGGCGAGCAGCCAGCCGTAGTGGAGACCCGCATCGTGCGCCTCATCGAGCCCCTGAAGGAGAGACGACGCATCCTGCTGGCCTCCAAAGAGATGCACCAGGTCGCTCAGGACCTGGAGGAAGAGATACTGTGGATCCAGGAGCGGCTTCCTCTGGCCTCCTCTAATGATTACGGCAACAACCTGCAGAGTGTTCAGCAGCATGTCAAGATCAACCAGACACTGCAGAGGGATCTGCAGGGGCGCCAAGCACGGGTGGAGGAGGTGTTGGACCGGGCGGGGATCATCGCCTCTCTGCGGACCCCTGAGGTTGACTTTGTGCGTGAGGGGGCGGGGCATGTGCGTCAGGTGTGGGAGGTGCTGAGGCTGGAGGCGGAGAAGAGGTCTGTGATGCTGGATGTGGTGCTGCTGGCCCAGCAGTACTACAGCGAGGCAGCCAAGGTGGAGTCCTGGCTGGCAGGCCAGAAACTGCACCTCATCAATGAGGAGAAGGGCACGGACGAGGAGAGCACCCTGCAGCTGCTGAAGGAGCACCTGGCCTTGGAGGCGACAGTGGAGAACTACGCTGAGACAGTGGGCATGCTCTCCCAGCAGTGTCAGCGACAGCTTGAGCTGGGGCACCCAGATAGTGAGGGGATCACCAAGCAGCAGTCCCACATAGACCGTCTGTATGTGTCTCTGAAGGACATGGTGGAGCACAGGAAGACCAagctggagcagcagtactggaTGTACCAGCTCaacagagaggtggaggagttaGAGAAGTGGATCACTGAGAGGGAGGCCGTTGCCAGCTCCACTGAGCTGGGTCAAGACCTGGAGCATGTCACGatgcTACAGGAAAAATTCACCAAGTTCTGCTCAGAGACCAACAGCATAGGCCAGCAGAGGATGGAGCAGGTGAATAAGATGGTGAATGAGATGATAGACTGTGGCCACACGGACGCGGCCACCATAGCTGAGTGGAAGGACGGACTGAACGAGTCATGGGCCGACCTACTGGAGCTCATGGAGACCCGAAGACAGATGCTGGCAGCATCACACCAGCTGCACAAGTTCTTCACCGACTGCAAAGAGGTCTTGGCTCAGACTGCGGGGAAGATGAGGCAGTTGCCAGAGGTGAGGGCGTGCCAAGCCAGCATCGCCAACCCTGCCACCCTGCAGAGGCTCATGCTCTCCTTCGAGCACGCCCTCCAGCTGCTCGTCTCACAGGTAAGGCAGCTGCAGGAAAATGCGGCCCAGCTGAGGACCATCTATGCCGGAGAGAAGGCTGAGGCCATCATGAGCAAAGAGCAGGAAGTGATGTCAGCATGGAAGGAGTTACTGGTTTCCTGTGAGGCCAGTCGTGTGCAGGTCACCTCGGTGACAGACAAGGTGCAGTTCTTCTCGGTGGTGCGCGAGCAGCTCATGTGGATGGAGGGCATCATGGGACAGATTGGAGGGGACGACCCCAGGGACTCGTCTTCTGCAGAGGTGATGATGAAACAGCATGGTGAGCTGAAAGCCAAGATGGATGGCCGTAGGAAGACAATACAGCAATGTGTGGAGCTGGGAAAGATCCTGCTGGCCGCAGGCAACCCAGCCTCCGAGGAGATAAAGGAGAAGTTGGATGCGCTCCTGGCTAAGCAGAAGGATCTCTCTGAGAGATGGGACAAACAGCAGGAGAAGCTACAGCGCAAGAAGGATCAGTTCCAGTATGCCCAGGAGACGGTGAAGGCGGAGGCCTGGCTGAAGGCCAAGGAGCCCCTGATTAGCTCCAGCTCCTCCTCTAGGGTGGCTGGGGGGGCTGGAGGAGACGCCCAGGTCCAGACTGATGAGGTGGAGCAACTCATCCTCCGCCACGAGGCCTTCCGCAATGCTGCAGCCACCTGGAAGGAGCGCTTCAGCTCACTGAGACAGCTCTCCAATGCAGAGAAgctgagagaagaacagagcagcaAGCCTTCCCCAATGCCACTCTCCAGTCGGAGGATGTTCCCATCATCCTGTCTTACTCCGACCATTCCTCTTGCTACCTCAACTCTGCTGAGACAGACGGTCCAGGTGCATATTGAGCCCAGGCCCAAGCAGACCAGTCTGGAGATGTCTGCCTCTGCCTCCTCTGCAGCCCAAAGGTTGGGTTCTACCATAGCCAGCTATGCTCCTGTCATAAATGGCTCTGGTTACCATGGACTGGACAATCAGAGCAGCAGCGGGGGATTGGAGAGTTCCAACTACCCTGGACTGAACCATCCAGGCAGTGGAGGAGTGGACAGCAGCTCTAGTTACCTTGGAGGGAACCATCAGACTGGCTCCCCGCCAGTGGATAGTTCTGGCTACCTTGGACTGAACCATCAAAACAGTGGGGGTATGGTTAGTCCAGGCTACCTACCTCAAAACCAAAGTAGTGGAGGTATGTGTGGTCCAGGCTACCTACCTCAAAATCAAAGCAGTGGGAGTATGGGTAGTCCAGGCTACTTGCCGCAAAATCTAAGTAGTGGGAGTATGGGTAGTCCAGGCTACCAGCCACAAAATCAAAGTAGTGGGGGTATGGGTAGTCCAGGCTACCTGCCAAAAAATCTAAGTATTGGGGGTATGGGTagtccaggctacctgcctcaaaATCAAAGTAGTGGGGGTATGGGTagtccaggctacctgccgcaaaATCAAAGTAGTGGGGGTATGTGTAgttcaggctacctgccgcaaaATCAAAGTAGTGGGGGTATAGGTAGTTCAGGCTACTTGCCGCAAAATCAAAGTAGTGGTGGTATGGGTAGCTCAGGCTACCTTGCACAAAATCAAAACAGTGTTGGGATTGGTAGCTCAGGCTACCTTGGGAAAAATCAAAGTAGTGGGGGTATGGGAAGTACTGGCTACCTTGCACAGCACCAAGGTAGTGGGAGTATGGGTAGTTCAGGCTACCTTGCGCAAAGTGTTGGGGGTATGGGTAGTTCTAGCTATCTGCCTCAAAGTGGTGGGGTCATGGACCCCAAAATGGCATATGCGTGGCAGCATCTGAAAGCTGACTGCATGCAGCCCAGGATCAACCACATGCACAAAGCTGTCAACCCCCTCCTGGAGGCCAGCAGGGCGCAGAGGGAACAGTTTGGGGACATCCCCATGGTGGACATGATCGGGCCGGAGTCTGGCCTGGATCTCCTCCACGGCAGGCTCCAGAGGGACCCTCGCGGCAGCCGCTCCGACCCCCAGATGGACCACCTGCGGCGGGAGAGGGAGTACAAGCTGGGTCGGCAGACCTCCAGCGAACAGGAGATTCAGGCGCGCCTCAACGAGCTGCCAATGATTGTGCGCCAGGAGCGCTATAGGCGACGCCTGGAGAGGCAGTCGTCCAGCGAGCAGGAGGGCAGTGGGAAGGCGAGGACACCGAGGCAGGACGACTCCAGCGACATGGAGTCAGCCAAGGAAGGCTCCGACAAGCGCTCAATAGAGAAGAGAGCCACCACCATGGCTGAGATTGTGGAGCAGgcccaggagagagaggcagcacaAGCTCGAGGGGAGATGTACCGCCCCACCAGCAGCCTCTCAGCACCCGTGACCTACGAGCGCCCGCGAGCCCGAGACCGCCCCAAACCCCGCAGGAGACCCCGCCCCAAAGAGCCTGAGGAGAAGCGACGCTCTCGCTCGGCTCCGGCCCAGAGCCCGGCACAACTTCTGCCACCCTCACACACTGCCCATAATGAAGGCTTCCTGTACCGCAAACACGACTTTGAGGGGCACCAGAAGAGTCCCAGCAGTAAGTCCTGGGTGAATTTGTATTGCGTGTTGTCAAAGGGAGGGATCACTTTCTACAAGGACGCCAAGAGCACCACCACACCTTACAATGAAGAAACCCCACTCGACCTGAGCGTCTGTATATGTGATAGCACCATAGGatacaagaagaagaaaaatgtcTTCGTTATCAAGAAAAATGATGGCAATGACTATATTTTCCATGCAAAGGATGAGGAGGACCTGAAGGCTTGGGTCACTAACATCACCACCAGTATAACTGAACATGAGGAGATCGCCAAGTGGGACAAGCCCACCACCTCGTCCACAGATCCCGACCGCtcggagaggaaggagaagtcAGAGGGCGACGCAGACGCCAGGTCAGAGAGGtctgagatgggaggagaggtggaggaggaggagaggtcagagaaagagaggtctgAGAAGGGAGAGGGGTCCAAGAAGACGGGAGAAGGCTCAGAGAAAGCAGACACGtcggagaggggtgagagggcaGAGGGGGGGGCAGGGGGCTCCAGCACGTCAGGGAAGAGCAAATGATCCCCGCTGAGTGGAGGAGTGGACTGGCATCCAACCATCTAAagcccccctcccctcctaaCTTTACCCTGCGACACCAGACAGTGCTGAAcaagggagacggagggagatgtGTACATTTCTGTGCAtatcttctctctttttctctctctatatctctctgtctctctctgtgacatCCTGAGGCTTGGGTCCTAATGTTAACTGTGACTGTCTGATCTTtcagcccctccccctcccccaggcAAAATACATCAATACTTGCATTGCATTGTGGCCCTTGCTGGTAGGTTGGAGGATAGGGGAGATTAACCAGCGCCACTGTGTGGTCACAGGCATTTGTCACAGTCACGACTCATTGATCATTTATTTCTTGGATTCACAGCATctctcagtatatatataatatacctatgACTGACTATGTAATGCTCTGTCTAAAACAACCCAAGCAGTGGTGAATGAAATGTCTCACAATATTTTGAAAAAGCTTTTTTCTGAAGcaatatacttttttatttattctctttgtttgagagagagggaaaggagaaaaGAAACAGTTGCTTATTAATTCTATGATTGTTCACATTCATCATCAGCTTATTTCTGTCAGGTCAGCAGCACCTTAAACACTTCCAACACGTTTGTGTATACTCAGCATATTGACATTTCAAACCCACCTCATCGCTATCTCTGAGTCATGTTGTCATGATGGAATGCTGGTATTACCTATTTGTGTTAATAATTGAATTGATCAACACACGATTCTCTTCTGAACTTTTGGATTAATCATGTACAGTCCCATGCCATGCCAGGAATAAATGTGAAATAGGGTTGCCAAAAAACTCCATCACATCCAAGAGTCTATTCAAGGAGGCAATGCCCAATTTAACCTCCTTGTGGTGCCAGACCTGTGTCATGGCATGACAGTATAGTGCACCTTCTATTTGAATGCCTTCATGTTCTTCGTGGTCTTGAGAGGTTCACCAgtttttaaatgaatttggcAGTGCAATAATTCCATCTGAAGGGAAGGTCTGTGTAAAATGCTAATATCATGGTAGATCTTAAACTATCCCCACATAAAGTATGGTGATAAGAAGATATGTTTTAATGACATAGCAGAGAAAAGCCCAAGCCAGAAATACTTAATGCTTCTTTTGACTGCTATTTGATCTGAGACAAATTAAGAAGCATTAGAACCCCATTGCtgtttttattatattattaGAATATATTCGACAGGGACTGTAATGGTTTCACTTGTGGAAATACAGTAGTAACATCAACATTAGGTGAACcccaaaatatacagttgaagtcataagtttacatacacttagtttggagtcattaaaacttgtttttcaaaaattccacaaatgtaatgttaacaaactatagttttggcaagtcggttaggacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001243 lncRNA upstream 18574 32983645 ~ 32990813 (+) True G879844
TU1001255 lncRNA upstream 46774 32960875 ~ 32962613 (+) True G879853
TU1001282 lncRNA upstream 57078 32952039 ~ 32952309 (+) True G879879
TU1001280 lncRNA upstream 62722 32946445 ~ 32946665 (+) True G879877
TU1001248 lncRNA upstream 72772 32934196 ~ 32936615 (+) True G879846
TU1001319 lncRNA downstream 11803 33052817 ~ 33053058 (+) True G879914
TU1001444 lncRNA downstream 213661 33254675 ~ 33255017 (+) True G880032
TU1001480 lncRNA downstream 256200 33297214 ~ 33298232 (+) True G880068
TU1001494 lncRNA downstream 282958 33323972 ~ 33324235 (+) True G880080
TU1001505 lncRNA downstream 308566 33349580 ~ 33349805 (+) True G880091
XM_021618096.2 mRNA upstream 229455 32639570 ~ 32779932 (+) False LOC110533664
XM_021618097.2 mRNA upstream 229455 32639572 ~ 32779932 (+) True LOC110533664
XM_021618093.2 mRNA upstream 374292 32599894 ~ 32635095 (+) False LOC110533663
XM_021618094.2 mRNA upstream 374292 32599927 ~ 32635095 (+) False LOC110533663
XM_021618092.2 mRNA upstream 374292 32607032 ~ 32635095 (+) False LOC110533663
XM_021619830.2 mRNA downstream 20397 33061411 ~ 33063183 (+) True LOC110534913
XM_021618110.2 mRNA downstream 89829 33130843 ~ 33140211 (+) False LOC110533672
XM_021618121.2 mRNA downstream 427350 33468364 ~ 33491755 (+) False samsn1b
XM_021618122.2 mRNA downstream 427350 33468364 ~ 33491755 (+) False samsn1b
XM_021618123.2 mRNA downstream 429808 33470822 ~ 33491755 (+) False samsn1b
TU999098 other upstream 1686787 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 1803969 31205083 ~ 31205418 (+) True G877809
TU997763 other upstream 2253731 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other upstream 2253774 30748506 ~ 30755613 (+) True LOC110533640
TU997187 other upstream 2987097 30021091 ~ 30022290 (+) True LOC110533629
TU1001378 other downstream 90131 33131145 ~ 33134914 (+) True LOC110533672
TU1001481 other downstream 259751 33300765 ~ 33301738 (+) True G880069
TU1001972 other downstream 1003480 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 1003480 34044494 ~ 34047724 (+) True LOC110533688
TU1003053 other downstream 1393528 34434542 ~ 34435418 (+) True hsd20b2

Expression Profile