RNA id: TU1001240


Basic Information

Item Value
RNA id TU1001240
length 4382
lncRNA type sense_over
GC content 0.36
exon number 3
gene id LOC110533671
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32981866 ~ 33045499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttgaagtcataagtttacatacacttagtttggagtcattaaaacttgtttttcaaaaattccacaaatgtaatgttaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgatgtttacagacagattatttcacttataattcactgtatcacaattccagtgagtcagatgtttatgtacactaagttgactgtgcctttaaacagcttggaaaataacagaaaatgatatcatagctttagaagtgtctgataggctaatttacatattttgagtcaattggaggtgtacctgtggatgtacttcaaggcctaccttcaaactcagtgcctctttgcttgacgtcatggaaaaaacaaaagaaatcagccaagacctcagaaaataaattgtagacctccacaagtctggtttatccttgggagcaatttccaaatgcctgaaggtaccatgttaatctgtacaaacaatagcatgcaagtataaacaccatgggactatgaagccgtcataccgctcaggagggagacacgttctgtctcctagagaagaacgtactttggtgtgaaaagtgcaaatcaatcccagagcaacagaaaatgaccttgtgaagatgctggaggaaacaggtacaaaagtatctatttctacagtaaaatgggtcctatatcgacctaacccgtaaggccgctcagcaaggaagaagccactgctccaaaactgacataaaaaagccagtctacggtttgcaattgcacatggggacgaagatcgtactttttggagaaatgtcctatggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagagggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtggcagaatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatgacatcatgaggaagaaaaatgatgtggatatattaagcaacatctcaatatgggatattgggtcttccaaatggacaatgactccaagcatacttccaaagttgtggtaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcataaagccctgacctcaatcccatagaaaatttgtgggcagaactgaaaaagtgtgtgcgagcaaggaggcctacaaacgccagctctgtcaggaggaatgggccaaaattcaccaaacctattgtgggaagcttttggaaggctacccgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttccgacttcaactgtatcataaACTACTTCTCCCTCCCTGTTTTCTGTCTTTCTGAGATTAAACCAATAGAAAATGATTGTCAGTCAGAGGAGGATTTATGTACAAGTGTCATGATCTGGTCATTAAATTGTAGATATCTTTAAGTACAGTCCACCAATAAATCCTATGCTCATTCTATGGAATGAAGTGGGTTAAGATTAAAACAATTATGTTAATCTACACAAATTAAATGTGGAAACAATACCAGTCAATTACGATATTACTGTTTATTTCATTTAAATGAAAAGAAAAATGCAAATTAGGAGTCACTAACAAAGGATAGTGTATATACACCAATATCtagttacattttacattttacaaGGGAAAAGAGTGCTGGACCTAGGTACATTTGTATTTATAAATGTGTTTTCCATTTAATTGATCATACGGGTTTGCTACAGACAGTTTTTTCTATTAGTAGTTCGATCCTGTCAGGCAAGTGAATTATTATAAGAACAGTCCTGTAGCGAATGATAGGCCTTCGCTACATTTACTTGAACTGGTTAACAAGCTCGGACGATAACAAAGAACTTGCTAACCTGAATGCTAGTTTATTTAGCAACTCTGGAGCTGATCAGACTGGTATCCAGGCTACACACGTTTTAGCTGTGACTCTTGAGCTATGACTTCAAAGCTAAATACATccacaaaatgttttgcttgcttCAGTCATATTGGGTGACTACTTATAAACATATATTGATAAGAAAGTGAATGAACACAAATATGTTGGTTTAGTTAGTACTGTACACCTACAATATGAAACCTCAATAGCCAGCATAGTATGATTGAAATTGGGTCAACTCTGTTTCAAATTGGCTACTTTTTAATTATGTTTACAGATGTGTTTTTATCTGATTAATAAATGCCCCATACCATGGACCTTCCAAATCAAACATAATTGATTaaagtggtctgtgtgtgttattagtcATAACcaaatctgtaaaaaaaaatacaaattaaaaaacCTTGTTAAGCCTTATCCCCAAAACCAGTATTTAGAAAATTAATTGATTTCACAATATACTCAATACAGACTGTTCCATGTGACCCAGGAAGCAAATACTGGCACTCATTGGTATTAAAGTGTTATGACACAAGCAACAGTCCAACTGCAGCTTGTTGATTGGACGCAGTTATCTTATTGGTAAGACTTGAATATATCATGATATATGTGTTATGTCATCTGTTACAATGTCGACTAGAAACTGTTGAGAAACTGTCAATTACAGTAAAACAACAAACTGACTATTGTAGGTGGTTATTGTAGGTACCACCATGCCATTCTGGATTACAGGCTTTAAAAACAAATGGTACCTAAAATTATAATTTATTAGTAGGCTTATTACCAATTGTTTTCATTGTAACTATTTCCTCTGAAATTGAGCCTTTCATTGCAGTACATACCGTATTTATTAGTTAAACACTAGTAGCTGTTTCTCTTATTTTCCACTGTGGAAAGTGAGAGGCTCTCCTAATTCtattcattctaattctatggttcCCGCCATCTACATTCTTATCAGAGAAATCCCAGCATCACTTGATGAAACAAACAGGTTAATACTATAATACTTACTAAACACACATAAATACTACAATATCTACTAAACACAGAAATACTATAATGCCTACTAAACACACAGAAACAAGGTAACGTAAAGCTCTTGACCTCATGGCTGGTGTTTTTGTgattttgtgtttttcttgtcTCAGATACTGTGTTAGTGTACCTTAATGATACCTATACCTTGCTGCTATGACATTTTATCTATGTAAACCTCTTTATTTGCTGATGCAAAATTTCCGTGAACATTGGTGTATGCTTGACACAAAGGTGTTAAGCCAAGAGTTTTTGAAAAAGTAATCATCAACCATCCTCCACAGATCAGTAGATACATAATGCATTCTATATAGTAGTGGGAGAGATTAAGAAATTCCTGATGTTGCAGCCACTCACAGTGTTTAAAAATCAAAGTAAATTTGCTTGATTGAGTAGAGAAAGTTAACCGATTCCTGTGTTAGAGATTTCACTCTGAAGTagaataaaacattattttaatttaatttggcAAATTAGTCAACCTTGCCAGAGTGTACTGTTCTTGAGACAGGCGTACGCAAAGGTCAATTCTCTTGATTTAGAGGGGGTAAACATACTGTCATTATAACACCAAATGACGTAATCACCAATTAGCATTGGCAAACATTTATTAGAATTCATGGACTTAATCCATATGACCAGCTATGTACTTAATGCTCCAATATCCACTTCTTAATGCCTTTGTGCATTTAACAAATGGAGCAAAATGTCAAGTGTCATGATGACACACTTATGTAGGCATAATGACACAGTTATGTAGGCATAATGACACAGTTATGTATACGCCTTCAACTAAAGTATTCCCTGTATTTAACCAAgtcatttgttattttttttgtaagAAGAAGAAAAACTGTTTGTGTCATAAAGCCACCTGGGGATAGTAACTGAACCACATAGCTCTGACAACCTTAGTGAAGAAATCAGTCATAGATGTCAAATGAAGGGCTGGTCTTTTAAAAAACAACTGTGTTTTCTGTTTTGAGGTAATAACGCTTCAGATCAGTAAGCTTGAAATCTTTgcttatgtacagtatgttggtACACAATAAAACATTTGTATGCTGTATTCTGTAGCCCTCTTATAGCAGATCAGTGAAAGGCTGAAACACATCAGAGCTACTTGCAGTTTTCAAGAGAGACGCAAGTCGAAAACACTAATAATTGATGATGTGCACAGTGTAAAACGCTAGTGGCGACGCAGGGTCTATAAGAAATATACATGTATACAGTATTGCACAAAGTCTGCACAACTCAATGTATGTCTTTTAAGAATGTACATTTTAATTCTGATTTGTTTATTAATAGACTGGAGCAACATCTGCCAATATCTGTCTGTTGAAATATGGTATTGTCTCATAAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001243 lncRNA upstream 50087 32983645 ~ 32990813 (+) True G879844
TU1001255 lncRNA upstream 78287 32960875 ~ 32962613 (+) True G879853
TU1001282 lncRNA upstream 88591 32952039 ~ 32952309 (+) True G879879
TU1001280 lncRNA upstream 94235 32946445 ~ 32946665 (+) True G879877
TU1001248 lncRNA upstream 104285 32934196 ~ 32936615 (+) True G879846
TU1001319 lncRNA downstream 7318 33052817 ~ 33053058 (+) True G879914
TU1001444 lncRNA downstream 209176 33254675 ~ 33255017 (+) True G880032
TU1001480 lncRNA downstream 251715 33297214 ~ 33298232 (+) True G880068
TU1001494 lncRNA downstream 278473 33323972 ~ 33324235 (+) True G880080
TU1001505 lncRNA downstream 304081 33349580 ~ 33349805 (+) True G880091
XM_021618096.2 mRNA upstream 260968 32639570 ~ 32779932 (+) False LOC110533664
XM_021618097.2 mRNA upstream 260968 32639572 ~ 32779932 (+) True LOC110533664
XM_021618094.2 mRNA upstream 405805 32599927 ~ 32635095 (+) False LOC110533663
XM_021619830.2 mRNA downstream 15912 33061411 ~ 33063183 (+) True LOC110534913
XM_021618110.2 mRNA downstream 85344 33130843 ~ 33140211 (+) False LOC110533672
XM_021618121.2 mRNA downstream 422865 33468364 ~ 33491755 (+) False samsn1b
XM_021618122.2 mRNA downstream 422865 33468364 ~ 33491755 (+) False samsn1b
XM_021618123.2 mRNA downstream 425323 33470822 ~ 33491755 (+) False samsn1b
TU999098 other upstream 1718300 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 1835482 31205083 ~ 31205418 (+) True G877809
TU997763 other upstream 2285244 30748506 ~ 30755656 (+) False LOC110533640
TU997764 other upstream 2285287 30748506 ~ 30755613 (+) True LOC110533640
TU997187 other upstream 3018610 30021091 ~ 30022290 (+) True LOC110533629
TU1001378 other downstream 85646 33131145 ~ 33134914 (+) True LOC110533672
TU1001481 other downstream 255266 33300765 ~ 33301738 (+) True G880069
TU1001972 other downstream 998995 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 998995 34044494 ~ 34047724 (+) True LOC110533688
TU1003053 other downstream 1389043 34434542 ~ 34435418 (+) True hsd20b2

Expression Profile