RNA id: TU1001579


Basic Information

Item Value
RNA id TU1001579
length 4343
lncRNA type sense_over
GC content 0.42
exon number 4
gene id samsn1b
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33468364 ~ 33492333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagacgtgacccagtcgttcgttctgaATGTTCCATTGCCACACTGGCTGgtaacattcttatcccttgctagctaggtagccaactacggctaacttacagtcatgtcAAAAAGTGCatccagaataacagcaaagtagctgcatttgtgtttgtttaaactgttttctagtgacatttatttggatacagcCACAAAAATGAGGTAATAATGCGCGATTTCGCctgcatagaaaatgtgctctctcatcaagacactgttgttcagaagaGCTAGCCAAcaaacacagctaacacaatcacttcaaactgaagctggaaagactgcaaaccaGCTGCATTTCATTTAGTTtcacctgttttctattgacatttatttttatatatccataaaaattatgccagctgattcatgagtTCGACTAGCTGAGAAAAgctgtcctactgtctgtctcGTCCCAAACTCCCTACAccttcattactatgggacagctgaagaTCGAATTTCAAAATGTAAACAATGTTGCATGTTGAGGCATACAGCAAGGTTAATACAAATCTccctgttgaaaaccaaatgctagtctaaaataaatgggagataatgtctagatgctttttatagtggagatcgagtttataaattgcctggcagGGTTGATGAGACAGTGAATTGcgcagtgagatggaacagagtaaatgggCATTTTAATGTCATAGCTGGTGGTAAGTTgtggaatatttttttaaacaatcatCATCCAGGATTAGatccacccgttgtataataaaaatacattccattgcatgagccacataAATTAATTGAACATTCCAgttgttgttacatgtggtcagccactgcgaggacgatcagctgtccatcctgtctccctgtagcgctgttttaGGCGCCTCACAGTACgaaacattgcaatttattgccctggccacatctgcagtcgtcatgcctccttgcagcatgcctaaggtacgTTCACGcaaatgagcagggaccctgggcatctttctattggtgtttttcagagtcagtagaaaggcctctttagtgtcctaagttttcataactgtgacaatgaagatctgtaaagttatttggatttttccaAATTATCTTTGagagacagggtcctgaaaaatgggcatttcttttttttgctgagtttacattaccatggaaattatagcatcacaataccaggcagccattgcgaATGTaaccatgagtttaccagtcaaattccaatcccattctattcattctatttccatgGGTGCTGCTGCTGAAGTGAAGGGGGCTTTGCCTAGGCAACCAAAGACTTGTTTGCTACAACACCTTGCTTTTgtcagcaaggagcaacaaagttttATCGCATTGTAAAGAGTTCATGTTACCGCagaaacagattcaaccacatgAATGCCTGGCCGTCCTGTCTTCAGATTGTTCCACAAAAAAAACTATGGTTTCAAATGGTTATGACATCTGTTTTTGGAGGGGGGGTTGATTGGTCTTCATCCATAATCGGCGGTTACACAGTACGGTTATTGTCCCAGCCCTAATTGTTTCAACATTagtagatttgtatttatttttcctttatttcatCTTTTTAAATTATGTTGCTGTATCGTAGTTTAAGCATTTCAACTATGTAACAACAAGTGTATGTTGATATGTGTGCAGTCTGCAGAGGGGGAGCAGGTTAATAGTGACCAGACCAGATCAGGAGGTATAGGCAAGAAGATGAAGGCCATCTCACTGACGATGAGGAAGAGGATGGGCAGGCAGTACGCTAAAGCCCTGTCAGAGGAAATGTGCgacgagacggagagagatgaagaaggaGAAGGGGATGTTGTTTACGGCGTCCATTCATTTCCAAAAGGACACAGAAAGTCCAGTCACTCTCTGGAAAGCCTCTACAGTCTCAATAGTGGACAAAGCTCCTCcagtaagcacacagccaacaccTTACTGGATTAAACAAGTTCTCTCTTTACTAATGCAATTTTAGTTTAATCTGCAGTTGATTAAAATCAAGTGTGTAGTCTCATCTGCTAAGGCATGTTGTTGGACCTTGATTTACCCAACAAAGGATGCCTGACAAACATAATCACAGTCAGAAGTCTAAACTGTCCATATTTAATTCACCGCCATAACCATCATACTGTAACTTAATATTATAATTGTTAAGTAGACTACTGTTAGACCAGCATCAATcataggaggctgctgaggggaggacggctcataataatggccggaacggtgcgaatggaatggcatcaaacaactGACAAACATGTGTTTAATGGATTTGATACCATTCCCCTAATTCCGCTCCAGCTATTACCACAGGCCTGTCCtccacaattaaggtgccaccaacctcctgtggcatCAACACTCATGAATAGACATCGCATTAAGGAGTAAAAAAACTACCTCACTCTGTAGCATGATGTATGACAACACCTACAATGCTCACCGTAACACATTCGGCCCTGTGTTTGTAAAGGTTGTTTTGAAGCTAACATGATGTCTGTCTCCTACCAATCCAACTGTGCTGCGCCCTAGGTGGGGTTACCAGTGGATCAGACGGCTCCAGTAACAGAGACAGTCTGAGGCTGGATGAGGAGCTGCCCCTTTCCTACACAGGCCAGTTCTGTGGCAGAGCCCGGGTCCACACTGACTTTGTCCCCAGTCCCTACGATACTGAATCACTCAAACTTAAGGTAGGGGATGTGATTGAGATCATCAGCAAGCCTCCTATGGGGATATGGACAGGCATGCTGAACAACAAGGTGGGAAACTTTAAGTTCATCTACGTAGACCTCATAGTAGAGAAGGTTCCTGAACCGCCTCAGAAGATGACACACAGGAGGAGCAGGAGACCCCGCCCCAAAACGCTACAGGAACTCCTAGAGCGCCTCAATTTGGAGGTaaactgtctctctcgctctctccttgtctctctcacactcttctctgtctctttcctcaaACCTGCTGTCACAAACAATCGCTCTCAAAAAAACTTGTTTCCTGCATTCTTAAAAAAAACTATAAATTGCATCTTTAGAGAACCATACATTTCTGATGTCAACACAGTGATGACAGACAGGATTGAGATGTTTTTATTGTAACATGATGGCTTGCTTACCCATTGGTATTGTTTCTCTGTGTTGTAGGAGTATGCCTCCTCCCTGCTCCTTAATGGGTACCAGACAGTAGATGACCTGAGAGAGCTGAAGGAGCAGCATCTGGTGGAACTCAATGTGACTGATTCTGAACACAGACATCGTCTGATGGCTGCCGTCGAGTGCCTCCAAGAACCCCAAAGTGATGGTCAGAAGGAGGGAGAGTCAAACAAGGAAGCCAAGTCCCCAACTGAGAGTATTAAAGCTGACCTGAACTGCCCCAGAGACTCTGGCTGCTACATGCCTTCTGACTGCTCAGACAACAGCAAGGAGGAGACAGACATCCACGTGCCAGCAGCACTGAACCATCATCCTCCCATGGCTCAGACCTAACCGCCACCAGCAGATACACACTCCTCAGGGCCTTTCAGAAAAATGATCGATGTGGATCCATGCAACAATTGTCTCATGCGAAATGCCCTTTACGTAGGACAAGAGCACTCCTCTTTGCTTTCACACTGCATTCAATATCAGTAGCCTATGTGGCTGGCATTGCAGTTATGCATTAACccactatttgcacataatttcAACCCCAAAAAATCTGTGATGATGGTGAATCAACCTTTAACATACATCCAATGACAATGTTGATTTCACGttaaattcacattagttgacaactcaaccaaatgtaaatcaaaactagatgttgaactgatgtctgtgcccagtggctaTCTACTGTACACCAAAGGCAGAACAGTCATTTCCTGAGTTGGCTTGGGTGCTGGTTTGTAATTGTTGATGATGTATCCCAAGCCTTTACAGTTATTCCTCAAGTCTCGTGAGTCATCCTGTCATAGGACCTGTGAAATCATTGCAGTAGGCTAGGCTTTGTTTTTAGCACAATGTGCAATGTCAACATTACGGTGTGTGGGTGTACAGTACATTTTCAGAGGTGCATGTGGAAGAGGGAGATATTAAATGAGGGTttaaagcatttttctactgtatcTCAGATTTATGGTATTATTAAACATTTTGTTAAAGTTTTGAGAGTTAGCAGCTTACTGACAGTTTGTTGAAAGCTCTCCTTTATTCTAGCAATTGTTTTACCAATGTACCAATGAAACGcaatatttttccaaaaataaagtATTATAATTTTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001566 lncRNA upstream 69241 33413696 ~ 33413936 (+) True G880152
TU1001565 lncRNA upstream 69574 33413327 ~ 33413603 (+) True G880151
TU1001562 lncRNA upstream 73360 33409560 ~ 33409817 (+) True G880148
TU1001561 lncRNA upstream 75718 33407204 ~ 33407459 (+) True G880147
TU1001554 lncRNA upstream 84127 33398823 ~ 33399050 (+) True G880140
TU1001664 lncRNA downstream 38316 33530649 ~ 33562850 (+) True G880234
TU1001771 lncRNA downstream 215331 33707664 ~ 33707872 (+) True G880338
TU1001772 lncRNA downstream 216762 33709095 ~ 33737521 (+) True G880339
TU1001810 lncRNA downstream 266215 33758548 ~ 33759801 (+) True G880373
TU1001784 lncRNA downstream 419275 33911608 ~ 33913890 (+) True dscama
XM_021618110.2 mRNA upstream 342966 33130843 ~ 33140211 (+) False LOC110533672
XM_021619830.2 mRNA upstream 419994 33061411 ~ 33063183 (+) True LOC110534913
XM_036990084.1 mRNA upstream 442163 33009387 ~ 33041014 (+) False LOC110533671
XM_021618096.2 mRNA upstream 703245 32639570 ~ 32779932 (+) False LOC110533664
XM_021618128.2 mRNA downstream 60975 33553308 ~ 33557914 (+) True serpinh1a
LOC110533682 mRNA downstream 76104 33568437 ~ 33569230 (+) True LOC110533682
XM_021618129.2 mRNA downstream 83076 33575409 ~ 33593092 (+) False acer3
XM_036990089.1 mRNA downstream 86235 33578568 ~ 33593092 (+) False acer3
XM_036990090.1 mRNA downstream 88595 33580928 ~ 33593092 (+) True acer3
TU1001481 other upstream 181439 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 348263 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 437678 32981866 ~ 33045499 (+) False LOC110533671
TU999098 other upstream 2160577 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 2277759 31205083 ~ 31205418 (+) True G877809
TU1001972 other downstream 552161 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 552161 34044494 ~ 34047724 (+) True LOC110533688
TU1003053 other downstream 942209 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 945007 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 966461 34458794 ~ 34470378 (+) True rnasekb

Expression Profile