RNA id: XM_021618131.2


Basic Information

Item Value
RNA id XM_021618131.2
length 1766
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC100136017
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33616384 ~ 33621122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCTGGCCACAAACCACACAAAGAAGACACTCTTGAGGAAGAAGCATCATGAAGACTTTCAATCTGTGCTTACTACTAATCAACCTGGCAATAGTGGTTCACTCTTTGCCAATCTCGCCACCTAGTGAAGAAGATGAAGCCCTTGCAGAGACGTACCTGAAGAGGTTTTTTAACCTGACAGAGGAGACGGGTCCTGCGTTCAAACGGGGGCCCAGCCAGCGGAGCAGGAAGGTCAGCGAGATGCAAAGTTTCTTTGGCCTCAAGGTGACAGGAACCTTGGACGCTGAGACTGTGACGATGATGAAGAAGCCACGCTGTGGGGTACCTGATGTCCAACTCAGCCGCTTCACCACCTTCGACAATCGCAAGTGGCAGACCAACCAGGTTACCTACAGGATTGAGAACTACACCCCTGACATGACTGTGGCTGAGGTGGACAACTCCATAGAGAGAGCACTGCAGGTGTGGGCCAAGGTCTCCCCCCTGAGGTTTACCCGCATCTACAGTGGCATCGCTGACATCATGATCTCATTCGGCACCAGAAATCATGGTGATTCTTACCCCTTCGATGGCCCTGATGGCACCCTGGCCCATGCCTTCTCCCCCGGTGCTGACATTGGAGGAGATGCTCATTTTGACGATGACGAGTCCTTCAGCTTCAGCTCAACCAGAGGGTACAACCTGTTCTTGGTGGCTGCCCATGAGTTTGGCCATTCCCTCGGTCTCAGCCACTCCACCGACCCTGGAGCACTGATGtacccagtgtacagctacacaGACCCCAGCACCTTCTCTCTGCCCCGCGATGACGTCAACGGTATCCAGCACATCTATGGTCCAAACACAGATGTGAACCCCAAACCAGACAAGCCAGATCCTACACCCCCTTCCACCCCTAATGCCTGTGACCCCACCCTAGTTTTGGATGCTGTCACCACTCTACGTGGGGAGAAGATGTTCTTCAAGGGCAGGTTCTTCTGGCGTAGCTACTCTCAGAGCAGCAAACCACAACAGAGCCTCATCAAGAACTACTGGCCCGAACTCCCCGACAACATCAATGCTGCTTACGAGAGCCAGCTATCTGACAGAGTGTTCCTCTTCAAAGATAGTCAGGTCTGGGCTCTCTACGGATATGACATCGTCCCCGGTTATCCCAGAAACCTGAAGAGCTTGGGCCTGCCCAGTACCGTGAATAAAGTTGACGCCGCCCTGTACGATGAAGATTCTCGCAAGACCTTGTTCTTCGTTGATGACAACTACTACAGTTACGACGAGGCAATGAAAAGGATGGACAAAGGTTTCCCCAAGCGTGTGGATGAAGGGTTCCCAGGCATGACAAGCAAAGTGACTGCAGCCTTCCAAGTCCGAGGCTTTACCTACCTCTATAGTGGCTCCTATATGTTTGAGTACAGCATGAGGACCAGGAGACAGTTACGCGTGCTAAGAAACAACTACTTCCTGCCCTGTTAGAACATCAACACTCATGAGCCGTTTAAAGTAGTAGCCATGAACAACAATGAATGCagccaaatatttttttataatatataatatagttGTTGTAACTTTGAGATTTTAAAGATTTGTTTTCTAATAAATATTTTTGTCACATGTCTATTTAAATATCTATTCATGCATCTCAATTATTTGATATGTTTCTTGATTAAATTGTAACCTAAATAATCTGAAAACATGAATGTATTGAATGAAGGCCAAACAAGTTTTTACACTTGTCATATTCAAATAAATTCCAAGTTATTGAGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005581 collagen trimer cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001664 lncRNA upstream 53534 33530649 ~ 33562850 (+) True G880234
TU1001577 lncRNA upstream 124051 33483177 ~ 33492333 (+) False samsn1b
TU1001579 lncRNA upstream 124051 33483177 ~ 33492333 (+) True samsn1b
TU1001566 lncRNA upstream 202448 33413696 ~ 33413936 (+) True G880152
TU1001565 lncRNA upstream 202781 33413327 ~ 33413603 (+) True G880151
TU1001771 lncRNA downstream 86542 33707664 ~ 33707872 (+) True G880338
TU1001772 lncRNA downstream 87973 33709095 ~ 33737521 (+) True G880339
TU1001810 lncRNA downstream 137426 33758548 ~ 33759801 (+) True G880373
TU1001784 lncRNA downstream 290486 33911608 ~ 33913890 (+) True dscama
TU1001913 lncRNA downstream 318313 33939435 ~ 33973224 (+) True G880468
XM_021618129.2 mRNA upstream 23292 33575409 ~ 33593092 (+) False acer3
XM_036990089.1 mRNA upstream 23292 33578568 ~ 33593092 (+) False acer3
XM_036990090.1 mRNA upstream 23292 33580928 ~ 33593092 (+) True acer3
LOC110533682 mRNA upstream 47154 33568437 ~ 33569230 (+) True LOC110533682
XM_021618128.2 mRNA upstream 58470 33553308 ~ 33557914 (+) True serpinh1a
XM_021618132.2 mRNA downstream 9362 33630484 ~ 33647312 (+) True acat1
XM_021618134.2 mRNA downstream 43997 33665119 ~ 33678545 (+) False tmprss2
XM_021618133.2 mRNA downstream 43997 33665119 ~ 33678850 (+) False tmprss2
XM_036990091.1 mRNA downstream 44232 33665354 ~ 33678545 (+) True tmprss2
XR_005034352.1 mRNA downstream 79450 33700572 ~ 33702711 (+) True LOC118936922
TU1001481 other upstream 314646 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 481470 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 570885 32981866 ~ 33045499 (+) False LOC110533671
TU999098 other upstream 2293784 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 2410966 31205083 ~ 31205418 (+) True G877809
TU1001972 other downstream 423372 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 423372 34044494 ~ 34047724 (+) True LOC110533688
TU1003053 other downstream 813420 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 816218 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 837672 34458794 ~ 34470378 (+) True rnasekb

Expression Profile