RNA id: XM_021618133.2


Basic Information

Item Value
RNA id XM_021618133.2
length 2324
RNA type mRNA
GC content 0.47
exon number 14
gene id tmprss2
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33665119 ~ 33678850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGGGAAGATGCTGCCAGCAATGGACAATATATAAACAAGATACATAGACATCATATAGAACATACAATATCAGAACAGTAACCATTAAACTCTGGAGTATAGGCTGATTGCAGTGGGAATATACAGAGGGGATATATCTATAAGCTGAGGGAGGGATACTGCCATGgcaaatatatacagtgttgtgcaTAGTGCAGTATAGTGTAGATTAGTATCTGAAGTCATTGATGACAAGGTGCAGTATTCGGTCTAGGCCTAGACCAGGAAATCacaatgttatttatgttagtgttATAGCTTAAATAATTGAACCACCCTTCAAGTCATGCTGTGCGCACAAGCTAAGGTGTGGTCATGGCTGTTCATTACCAGGAGCAAAGGGAGAAATGGCctgagggagagaaaaaagaaaggacACCGAATCAGTATTTGAAAGCAACAGTTGAACTAATCCAAGATTTGATCTTATCAGTACGCTGAATGTGGTGTCGACATGAACAATAACCAGACACCAGGTCCCCAGTATGTGAACCGTGGGTTTCAACAAGGGGAGGGAAGACCCCCTCCTTACGCCTCTGCCCCAAAGATGCACAATGTCCCCCCCTCTATTTGTCCTCAGTACGCTCCCCAGTACGCTCCCAAGACCATCAATACCCACCACACGGTCACCCCTGGACTACCACACCCAGTCCCAGAACAAAAAGCGGTGAAGAAATGTCACTGTAAATGTATTGTGGCATCTATCCTCAGTGTCTTAGTTTTCCTTGGGGCAACAGGAGCGTTGGTTTGGTATTTCCtgtccagccagtgtgtgttggggaggTCCTGTAGGCAGGGTTGTGTGTATCTGAGTGCATCCAAATGGTGTGATGGCATCAGAGACTGTCCAGGAGGAGAGGACGAGACACAGTGCCTGCGCCTCTATGGGTCTGGTTCTGTGCTGCAGAGTTACTCATCAGACAGTCAGACGTGGAAGCCAGTGTGTGCTGATGACTGGAATGACAACTTTGGCAGGGCCACCTGTAAAAAGATGGGATACAGCAGTGGGTCCTACGTTCGGTCCTCACAAAGAAACCCAGGCTCCTTGGCTTCCGAGGGCTATTTGAAGCTGTCTAGCTTTGACCCCCAATCCCTTCTACAGAGGCAGCTAACTGGAAGTCCCTACTGCTCAGCACAAGCAGTCTCCCTGCAGTGTATTGACTGTGGTGTCAGTATAGCAGCTCCTTGGAGCCGAATCGTAGGGGGGGATATAGCAGTGAGCGGTGCCTGGCCATGGCAGGTCAGTCTGCACGCCAGGGGCCAGCACCTGTGTGGAGGCTCCATCATCAGCCCTGAGTGGATCCTCACTGCTGCCCACTGCGTAGAAACGCTATCAAGGCCCAGTCAGTGGACGGTGTATGCTGGCTATCTGGCCTTGACCCAGATGGATTTTGCCACTGGGAATTCAGTGGGACACATAATCTCTCATGAAAAGTACGACAAGCAGACTAGTGATAATGACATCGCTCTCATGAAACTCAGCACACCCCTCACTATGTCAAATACGGTGAGACCAGTCTGTCTGCCCAATGTCGGCGTGAATCTGACTCCCCAGCGAGAAGCCTGGATCTCTGGATGGGGGTCCATTAGGAGTGGTGGGTCGTCGTCGGGAAACCTGCGTCAGGCCCAGATCACCATGTACAGCAGAGAGACATGTAATGCATCGTTGGTGTATAATGGACTTGTAACCGCCTCTATGATCTGTGCTGGGACACTGGCAGGAGGAGTGGACTCATGTCAGGGGGACAGTGGAGGACCAATGGTGGCCAAGGAGGGTTCAGTATGGTGGCTGGTAGGGGACACTAGCTGGGGTATAGGTTGTGCCCTGAAGAACAAACCAGGAATCTATGGCAATGTCACCCACTTCCTCCCCTGGATATATGAACAAATGCAGAAGAATTGATGGAGATGCCAATGAAGACGCACACTGTTGCTTATCAAATTCACCTGTCTGAAATAAAGCTTTTGAATACATTACATGTACACTGCTTTCAGATATTTTTTGTGCCTGTTGACTTCTAATATTTAAGTTTTCAGGGAATATCtatttgacatttttttattAAGATATTTTTATCATGTTGAGGAAAGGTATGCAGGAATTGTTATTTTGAAAGGGAATACTGTACTCTGCATACTTGCACACACATAAATCCATGTTTTGGTCATACCTTTTTTGTTTTACATGATCAGAGCCTTTTCTCATTTTTATGAACCTGTGTATGATAATATAAAGTATTAATTGACACAAAATAAAGTGTTATGTTTTTATGTACATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001664 lncRNA upstream 102269 33530649 ~ 33562850 (+) True G880234
TU1001577 lncRNA upstream 172786 33483177 ~ 33492333 (+) False samsn1b
TU1001579 lncRNA upstream 172786 33483177 ~ 33492333 (+) True samsn1b
TU1001566 lncRNA upstream 251183 33413696 ~ 33413936 (+) True G880152
TU1001565 lncRNA upstream 251516 33413327 ~ 33413603 (+) True G880151
TU1001771 lncRNA downstream 28814 33707664 ~ 33707872 (+) True G880338
TU1001772 lncRNA downstream 30245 33709095 ~ 33737521 (+) True G880339
TU1001810 lncRNA downstream 79698 33758548 ~ 33759801 (+) True G880373
TU1001784 lncRNA downstream 232758 33911608 ~ 33913890 (+) True dscama
TU1001913 lncRNA downstream 260585 33939435 ~ 33973224 (+) True G880468
XM_021618132.2 mRNA upstream 17807 33630484 ~ 33647312 (+) True acat1
XM_021618131.2 mRNA upstream 43997 33616384 ~ 33621122 (+) True LOC100136017
XM_021618129.2 mRNA upstream 72027 33575409 ~ 33593092 (+) False acer3
XR_005034352.1 mRNA downstream 21722 33700572 ~ 33702711 (+) True LOC118936922
XM_036990096.1 mRNA downstream 51415 33730265 ~ 33851546 (+) False dscama
XM_036990095.1 mRNA downstream 51434 33730284 ~ 33913416 (+) False dscama
XM_036990092.1 mRNA downstream 51436 33730286 ~ 33913416 (+) False dscama
XM_036990093.1 mRNA downstream 51438 33730288 ~ 33913416 (+) False dscama
TU1001481 other upstream 363381 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 530205 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 619620 32981866 ~ 33045499 (+) False LOC110533671
TU999098 other upstream 2342519 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 2459701 31205083 ~ 31205418 (+) True G877809
TU1001972 other downstream 365644 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 365644 34044494 ~ 34047724 (+) True LOC110533688
TU1003053 other downstream 755692 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 758490 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 779944 34458794 ~ 34470378 (+) True rnasekb

Expression Profile