RNA id: TU1001784


Basic Information

Item Value
RNA id TU1001784
length 2196
lncRNA type sense_over
GC content 0.39
exon number 2
gene id dscama
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33730265 ~ 33913890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGCCCCAGAAGAGTCGCTCCCTGAAACGGCCATCACGCATGGCACCCCCAACTCCCACGGAGGCCCCCCAAGCCAGCAACAGGGCCAGCAGCAGGGACCCAGTGGCCCAGTGGCAACCCGGCTCAGCAGCCACCCTGCCTCACAGAGAGGGCTCAGAGCTGGCCCAGGCCGCCAAGCTTAGCACCTCCCAAGAGTCCCTGCTGGACTCACGAGGACACCTCAAACAGACCAACAACCCCTACGCAAAGTCCTACAcgctggtataacatcagtggcATGGGGCCAGACTAAAACTCACACTAACACTGGACTTATTACACTTACAAGTGCAGTAAACTGACTCTCACCACACAGTCCTGTATATAATGTCCCCTTTCTTCTTAAAGGAGGGGTACCTTTTACTAAtcttcttttatttatttttggagctttctttctttgtttttttttttaaacttgtgaGTAAATTCATTCATCTGAAATGACTCCACGTGGAGCTTGCCAAAATAATTTTGTTATGAGGGAACATTATTTATTCTTGATTATTATTGTTAATCATTAATTATTAATCAGTGATTATTTGTTCTTAGTTCTCAACTATTAATGATTATTAATTATTGATTACAATTGATCAATTATTACCATTACTACACTATTTGAATTAGAACCTGGACAACTTTTTTCCCAGAGTATGAGATGATAATTTGGAGCTTGTCATTTTTTTCTATGGAAACTTCCTCTAAAACACTGAATGAAACTCTGGAGAAATCTGGGATGGAAGCAATCGACACCAGTCCAAACTTGTCAGCTGCTCTCAAATTATTACTTTTTTGAAGAAAAAAATCTATTTCCTATGGATGCATGGGTACTGACCAATTAAAGACGATTAAGAGGATTATGATCACGACTGGACAGCCCAGTTGACCATTTTTGTCACACAATGAAATGATCCAATGTGAAGATTTATTATTCTtattactataaatatatatatatataaaagagaAATCACTTTTATTTGTGGATATTACAGGGAAGAATTGATTTGGTTAATAAAGTCCGTAGTCATGTTTGCACATATCTCGTTTTGATTAGGAAATGGAGTCTCTGTTGATCTTTCTCTGTGTCGCATACTCTGATGGTGCAATATGAAAAAAGATTATGAAAATTATATTGATACTATTtgctctatactgtactgtaatgaaaAATAACTATGTTAGTATACTTACAGGGCGGGACAAACCCCAGCTATGTATTCAGGTGTAGTTTACCACTGCTAATTTGCCAGGATGGTAAAGGAAGTTAGTTAGAACAGGGAGGGTCAGAGATATAACGGTTTGCACTTCAcgacaccccccaaaaaaatgtccaGACAGAGCCCCTATTCTCAGTGCACTAGGTAGAGTCTTCAAggctctcactctcctcctcaaTAGATTTATTGTCGCTGCATTGCCGTGATGCTCCTCTACAGGGAAAAACTTGAGACAATCCCCCCTTCAAACCAAATCAAAATCTATGGGAAGTGTCTATCTAAAGTGTGGATGTAACTACACAGTTTTAGTTGTTGTTTCCCCTGGCCCATTTTTCTTTCTATTTTAGTCCTGGAGGGAGAGTTTGATAAGAATGCTGTGAGGTCATTAATGGCAGTTTATATTATTTGTTTTAATTGTCTTCATTATGATATTCCTTTTAACAAAATGTCgctttttatttttaacatgGTGTTCACCATGGTGGCACTGAAATAAAGAGAAACTAACCCACAGTTCAAATTTTATTAATAAAAAGGCTGTTCCCCAAATGATCCTTCACAGTTTGACATGAATGACTGGCAATGGGTTGTTTAGAGGCACGGATAGAGGAGGACGCCCGCACAGGTTGTGGGTGGGGTGTGTCActgggtgagtgagtgaataAGTGAGTGAGGAACTGAGTCAGTGATTGAGTGGTGATAGGGGTGGATTGTTGGGTAATTCATCTGAAATGAATTTGAACGACAGTCATTGATTATCACTAATTCCTTTTTATGTAAAAGCACTCATGAGTCTCATAAAACTCAAACtctccaaataaaaatATTGTTTTAAGATCATCATGCCAAGGTTCATTTATACCCCTTTAAGCATCCCCccaaaatatgtttaaaaaaaaattgatgaaacattgaatttggccttactgctattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001810 lncRNA upstream 151807 33758548 ~ 33759801 (+) True G880373
TU1001772 lncRNA upstream 174087 33709095 ~ 33737521 (+) True G880339
TU1001771 lncRNA upstream 203736 33707664 ~ 33707872 (+) True G880338
TU1001664 lncRNA upstream 348758 33530649 ~ 33562850 (+) True G880234
TU1001577 lncRNA upstream 419275 33483177 ~ 33492333 (+) False samsn1b
TU1001913 lncRNA downstream 25545 33939435 ~ 33973224 (+) True G880468
TU1001944 lncRNA downstream 72567 33986457 ~ 33986658 (+) True G880497
TU1002006 lncRNA downstream 167224 34081114 ~ 34081326 (+) True G880556
TU1002008 lncRNA downstream 169170 34083060 ~ 34083400 (+) True G880558
TU1002009 lncRNA downstream 171666 34085556 ~ 34085979 (+) True G880559
XM_036990096.1 mRNA upstream 60062 33730265 ~ 33851546 (+) False dscama
XR_005034352.1 mRNA upstream 208897 33700572 ~ 33702711 (+) True LOC118936922
XM_021618133.2 mRNA upstream 232758 33665119 ~ 33678850 (+) False tmprss2
XM_021618134.2 mRNA upstream 233063 33665119 ~ 33678545 (+) False tmprss2
XM_036990091.1 mRNA upstream 233063 33665354 ~ 33678545 (+) True tmprss2
XM_021618137.2 mRNA downstream 130582 34044472 ~ 34047706 (+) False LOC110533688
XM_036990097.1 mRNA downstream 175847 34089737 ~ 34120835 (+) False LOC110533689
XM_021618138.2 mRNA downstream 176038 34089928 ~ 34120835 (+) False LOC110533689
XM_021618139.2 mRNA downstream 176038 34089928 ~ 34120835 (+) False LOC110533689
XM_021618140.2 mRNA downstream 176038 34089928 ~ 34120835 (+) False LOC110533689
TU1001481 other upstream 609870 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 776694 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 866109 32981866 ~ 33045499 (+) False LOC110533671
TU999098 other upstream 2589008 31241810 ~ 31322600 (+) True LOC110534883
TU999056 other upstream 2706190 31205083 ~ 31205418 (+) True G877809
TU1001972 other downstream 130604 34044494 ~ 34047678 (+) False LOC110533688
TU1001973 other downstream 130604 34044494 ~ 34047724 (+) True LOC110533688
TU1003053 other downstream 520652 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 523450 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 544904 34458794 ~ 34470378 (+) True rnasekb

Expression Profile