RNA id: TU1002672


Basic Information

Item Value
RNA id TU1002672
length 1398
RNA type TUCP
GC content 0.40
exon number 3
gene id LOC110533687
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33939072 ~ 33973312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTATTGGTTCAATGGAAACGTGAGGAAATGAAAGGGTTACTCCACATACTATAAAACCTCCCCTCTATAACGGACCAAGGCATCGTGGACGGGAGGACTGCTTACGAGTGACAAGTGTACATCAAGTACTGGAATCATCGTAACTACAACACTTATAAATCATGAGTGAGAGACCAGGATCTGGAGCCATGAGTGGAAACAGCAAACCTTCTGGACAAGATGACTCCAAGAAGGATGCTCCTGAGGAGGACTTTGCGGACATCGACATGAAGGCCCCTGAGACGGAGAAGGCTGCTGTGGCGATCCAATCACAGTTCAGGAAGTTCCAGAGCAAGAAGAAGCAGGAAGTGAAGTCCTAGAGTGGGCAGGACAGGGCCAGGCAGCTCTGTCTCCTCCTATAAGCTGGGACTGCACCAATTGGGGGCTTGGTCTTGCATGTCAATCAAACCACACTGTTATGGACTCAACGGCTGGAGGGAGGGTTTGGAGTTAAAGAATCAAGGGATCACTGATATCTTTGTGAAATTATTATGTGTAACTTATTATTCATTGCTGTGTCCATAAATGATGATTAAGTTATGGATATATCTTGATCTTTCCTATGATTTTGCTTTTTTTGTGTTTTATTGATAATGTTATACTCTCTATATTGTCCAGTTGCTGTAGCAGTCCAAACCCTTAGTAGTACTCTCATGTCTCATGTCATGTATGCTATAACATACACATTTGAACAGTAAAAAACTGCTTAATAAGTAGGTTCGCTCGTAAAGCAATTAAGGAACTGGAACTAGGGTTTTATCTCCCTCAGGAGGAACATGTATTTGTGATGATTGATCGTCAGATTCCAGTCATGATTGCATTGGCATTCTTTTCAGCTATGGCATCATAAATCGAAAGATTTTATTTTCCTAGGAGGTTTGTTAATGGTGTTTACCTCTCACTGTGGAGTGTTTCCAGGCAATGCAGCTTGTTTTGTTTGATCCCTCCCAGCTAGCGCCGTGCCAATTGTCTTTCATACCTTATGACTGAAGCATTTAGAATTGAATCAATGGGTCTAATTTTATTTCCAATGTCTCTGATATCTCTCTGCAACTTGGCAACTAAATCTAGGGCTTATTCCATTATTCATGTGAAAATTGTGGATATTTTCTTTCTTCCTTGCTTCCCTTTAACATCAACGTCAATAGAAAAAGTATTTTTCTTCTGGTTTTgacttttattttttacatttgttggTTTTGATTGTGTTTCTATTGATCTTGTGATTTAAATCCCCATTGTTTCCTTTGAAGTCATTGCTCAAAACCAAATGAGTAGAATATACGGTACAATACCATCATCCTTCAGTAGACACCTTCAAATAATATATACTTAATAAATATCCCAAAGAGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1002680 lncRNA downstream 44315 33894620 ~ 33895120 (-) True G881183
TU1002576 lncRNA downstream 179634 33758562 ~ 33759801 (-) True G881090
TU1002485 lncRNA downstream 299757 33630275 ~ 33639678 (-) True G881004
TU1002433 lncRNA downstream 318331 33616184 ~ 33621104 (-) False G880954
TU1002746 lncRNA upstream 11298 33984610 ~ 33984880 (-) True G881242
TU1002747 lncRNA upstream 12209 33985521 ~ 33985778 (-) True G881243
TU1002754 lncRNA upstream 18246 33991558 ~ 33991770 (-) True G881250
TU1002674 lncRNA upstream 61493 34034805 ~ 34043998 (-) False G881179
TU1002675 lncRNA upstream 61493 34034805 ~ 34043998 (-) True G881179
XR_002475014.2 mRNA downstream 362981 33555433 ~ 33576454 (-) False LOC110533683
XR_002475015.2 mRNA downstream 363026 33555433 ~ 33576409 (-) False LOC110533683
XM_036990086.1 mRNA downstream 393923 33494333 ~ 33545512 (-) True LOC110533678
XM_021618127.2 mRNA downstream 394260 33494333 ~ 33545175 (-) False LOC110533678
XM_036990087.1 mRNA downstream 430738 33494333 ~ 33508697 (-) False LOC110533678
LOC110534889 mRNA upstream 211622 34184934 ~ 34185439 (-) True LOC110534889
LOC110534891 mRNA upstream 239275 34212587 ~ 34217566 (-) True LOC110534891
XM_021619831.2 mRNA upstream 251636 34224948 ~ 34225889 (-) True LOC110534914
XM_036989343.1 mRNA upstream 259824 34233136 ~ 34234195 (-) True LOC110534892
XM_036989344.1 mRNA upstream 274165 34247477 ~ 34248415 (-) True LOC110534893
TU1002474 other downstream 260596 33613325 ~ 33678839 (-) True G880994
TU1002241 other downstream 687914 33153970 ~ 33251521 (-) False LOC110533673
TU1002275 other downstream 774413 33162912 ~ 33165022 (-) False G880807
TU1002179 other downstream 901552 33036163 ~ 33037883 (-) True G880718
TU1002177 other downstream 901767 33036163 ~ 33037668 (-) False G880718
TU1003325 other upstream 439751 34413063 ~ 34417261 (-) True G881778
TU1003400 other upstream 619010 34592322 ~ 34596182 (-) True LOC110533714
TU1003456 other upstream 625055 34598367 ~ 34598675 (-) True LOC110534894
TU1003687 other upstream 919667 34892979 ~ 34893928 (-) True LOC110533718
TU1004252 other upstream 1329602 35302914 ~ 35304055 (-) True G882578

Expression Profile