RNA id: XM_021618140.2


Basic Information

Item Value
RNA id XM_021618140.2
length 6976
RNA type mRNA
GC content 0.55
exon number 33
gene id LOC110533689
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34089737 ~ 34120835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGTGTAGAGATCTGAATAGTACAGTTTTTGTTGGAAATTCAGGGTagtaggttgaatttggttagtgttttttgtttttggtaaTTCGTATGATTTGTTCATccaaaacatgttttgttttggTGATATTGTTTACAACCCCGTACCGTAGGTGGCGGTAATACACCGTAGTCTGCCAataaagagaaaaaaatataataataagaagaagaaggaaaaaaaacttTGGCGCACATCGACATTTTCAAACGCCTGACGCATTTTGGCCTCCTTACCGCAGATTGCCTCCTAGTGCGACGAGATTAGTTACGGAAACTAGCATTGCTAGGTAGCTCTCCCCGTTTAGAGACTTCGACCTTATTTTCACCCATATTGTGACTGGATAGACCATAGTCTTATTTACGACATATGCAGTCCTACTAGCAGGGGAAGATGTTCAACAAGTCGTTTGGTGCTCCCTTTGGGGGAGGGACTGGAGGATTTGGGACGTCATCCACATTTGGGCAACAAAACACTAGCTTTGGGGCGGCAACAGGTGGCTTCGGAGCCTCAGCGTTTGGGGCAACCAACAACACTGGAGGACTCTTTGGGGCAACGCAGAATAAACCAGTGGTGACAGCCAATCCTCAGCAAATCCACACTGGTGCAGGTAGAGGAGGTGGCCTATTTGGTTCCAGTACCTTCAGCCAGCCTGTGACATCATCTACCAGTAGCGGCTTTGGCTTTGGTGCGCCCAGCGGCACCTCCACCAGCCTGTTCGGCAGCACCAGCACGGGCGGCGGCGGAGGACTCTTCTCCCAGCAGAGCAATGCCTTCGGCGCCGCCAAGCCAGCCTCTTTTGGCAcGTTCGGTACGAGCACGGCCAGCAGTGGGGGGCTGTTTGGGGCAACCAACTCCAACCCTTTCGGAGGGGCGTCTACCTCCCTGTTCGGAGCATCAGGGTTTACCCAGCAGGCTGCCCAGCCAGGCACCACTGTCAAGTTCAACCCTCCAACAGGAAGTGACACCATGGTGAAAGGGGGTGTGACGACAAGCATCAACACCAAGCACCAGTGCATCACGGCCATGAAGGAGTATGAGAACAAATCACTGGAGGAGCTGAGGTTTGAGGACTAccaggcagggaggaagggacCCACTAACCCTATGGCTGCACCAACAGGGGGTCTCTTTGGGGCTGCAGCCGCAGCCACCCCCAGTACGGGGGCTACAGGGCTGTTTGGCTCCTCAGCCACTAACACAGGCTTCTCCTTCGGCCAGGCCAAAACCTCATTCGGAACTAGTGCGGGTGGGTTTGGTGCAGCCACAGGCAGTCTGTTTGGGCAGCAGCAGCCCCAGCAGGTCCAGCAGGCAGTCAGCCTGTTCAAGCCCTTCGGCCAGGCTACAACCACCCCCAACACAGGCTTCTCCTTCGGCAGCACCATGGGCCAGCCCCAACAAACCAGCACCATGGGGGGTCTGTTTGGGGCCACGGCAGTGTCCCAGGCAGGGGGGTTGTTTGGAAACACAGCTCAGACCGCACCAGCTACGGGCTTTGGGACAGGCACCGGACTCTTTGGACAAACCAACACCGCTTTCGGCAACGTCGGCACACAGGGCTTGTTTGGTAATAAAACGGCAGGGTTTGGTGTTACCACCACCAGCACCCCGTCGTTTGGCACGGGCACCGGCCTCTTCGGCAACAAAGCTGCCCTCTCTCTCGGAACAGCTACCAACACATCCAACTTTGGTTTTGGACCCACTGCTGCTGGCGGAAGCCTTTTTGGGAACAAGACTGCAGCAGGAGGACTAGGGACTGGGCTGGGAGCCAGCTTTGGAGCAGTAGGTTCTGGCCAGATGTCTCTGTTTGGGAATAACAAGACGTTGGGTTCCACTCTGGGAACAATGGGAGGTTTTGGAGTGCAGGGATTCAGCACAGGAAACAGCACTCTGGGCTTCGGAGCGCCACAACAGCCCGTTGCGGTGACGGACCCTAACGCGGTGGCGGCCCAGCAGGCAGTGCTGCAGCAGCAGATCAATGCTCTGGCCTACTCCCCCTTCGGAGACTCCCCCCTCTTCAGAAACCCCCTCTCTGATCCCAAGAAGAAGGAGGAGCGTCTGAAGCCCACCAATCCAGTGGCCCAGAAGGCATTGACCACACCAACTCACTACAAACTGACACCGCGACCTGCGACACGTGTGCGGCCCAAAGCTCTGACATCATCGGGCTCCTCCAAGTCCCAGCTGTTTGATGGGTTGGATGACGAAGAGCCTTCTCTCACCAACGGTGCCTTCATGCCCAGGAAGAGCATCAAGAAGCTGGTGCTGAAGAACCTGAATGGCAGCAGCCTGTACAGCAGCCCAATCAACAGAGACTCCGACGACCTGTCTTCTCCACCAGAGTACCCCCTCAACGGACTCggtgcCAGTGTGGACGAGGATGATGATgtgagggaggtggtggagggaggagccGAGAACAACCTGGAGATCAAGTTCTACGCCAAGCCCAACCTACAGGACACCATCTCAGAGCTCAATGCCCATAGGATGGGGGCTGGGGGCAGGAACGGGCTTGAGGTGAGCAGCGAGGACATATCGCTGGGAGATGACTCCATACAGGAGGAGCGAGTGGAGGGCCCCCCCCATCCTGCAGGTATCGTTCTGGGCCGTGTGGGCTACTACACCATCCCTGCCATGGACGAGCTGGCCAAAATGGTGGACGAAAACGGGGTGTGTGTGGTGGAAAACTTCACCGTGGGCAGAAAAGGTTACGGCTCCGTGTTCTTCCATGGTGAGGTGAACGTGACTGGGCTGAACCTGGATGAGATTGTCCACTTCAGACGTAAAGAGGTTATCGTCTACCTCGACGACAAGAACAAGCCTGCTGAGGGGGAGGGGCTCAACAGGCGAGCAGAGGTGACTCTGGATGGGGTGTGGCCTAATGATAAGACCACCTGTACTCAAATAAAGAGCCCTGAGCGTCTGTCTGAGATGAACTACGAGGGCCGCCTGGAGAATGCCTCACGCAAACAGGGCGCCCGCTTCCTCGAGTACCGCTCCGAGACGGGGTCCTGGGTGTTTGAGGTGGCCCATTTCTCTAAGTACGGCCTGCAGGACTCTGACGAGGATGAGGAAGTCCCTCTCAAATTGGACCCCAAGAAGCTGAAGACGGCAACAAGACTTCCACCAGGGCTGCTGCAGCTGCCTCCCTCCCAGCAGCAGGTGGCGCCACAGGCTCAGTCGACAGCAGTGCTGGAGCTGCTGAATCGCATGTCGGAGGTGGACAGTGATATGGCCGACATTACCCAGGATGCCCCAGGGGAGAGCATATTGGAGGAATGGGAGAGTGGCATGTGGGAGAAGGGAAGTCGGCTGGGGAATGTGACCCCTTCGGAACACGACTCTGTCTCAGCGTCCAGTCAGATCGCCTCCTCGCTGGGGATCAACCCTCACACACTACAGATTATGAAGGCATCCCTGTTTGCTGAGGCCGATGATGGTGACATGTTCcaggagcagggagggatgaCAAGTTCTCTAGATGTGGCCTCTCCTCGCATCAACCTGCCTGGCACGCAGGGTAGGCCCTCCAtaggTGGTCTCCTGCAGACTCGTTTCGGCGGTGCTGGTCTCTTTCAGCTCCCTGACGTGCCCTTCGGTGGGGGCCTTCCCGGCAGGCTGTCCATGTCTCGGGTGTCGCTGGCGGTGCCTGAGCCATCGCGGGTCTCCCCCTGGCCCTCTTTTCTTTTGCTAGCCCCACCGGCCGAGGCCACTGTACGGACAGTAGGGGCTCGGCGCCTGGGGGGACCTGTGGACCCAGAGAACTCAGTCACACTGGGGAAGGGCCGTCTTCTGATGGATGCGGCTTTGTTCACGGGCCGGTCATTTCGGGTGGGCTGGGGTCCTGGCTGGACTCTGGTCCATTGTGGAGATGGGCTAAGTGTGGCCGGGGACAAGGAGCAGGACCACGGAGACACAGGAGCTGCAGGCTTTGGATTCCTGCCCAAACCTGCCAAGAGTAGACTACTGTCAGACAGTCCATTCAAGGTGGTGATTGAGCAGGTGGTTGGTCTGGAGCTGCGGAACAGTGAGGAGAGCCAAGCGGTGTACCAGCGGCCCCTGGAGATCAGCCTGAAGCACAGCAGCATCAGTACAGAGGGGGCCTGCCCCTTCATCCAGCCCCAGAGCGGTGTGGCCGCCCTGCATGAGTACGCAGAGTGGATTACTGACCTCAACCAGGAGGCTGGTGCTGGAGATGCAGTCCTGGGTCACTGGGCTCAGGTGTGGACTCTGTGTGAGGCCCTGTGGGGCCGACGGTGTTTGACAGGGCCTGGTACCAGTGGCTACCTGCagcagatggagaggagaaggaactTCTCAGCCTGGCTGTCCCACAGTGCCACCCAGAGGATCGAGCAGGAAGTGGGCCTGAACCAGGGGGGAGGAAACGTGGAGGCCATCTTTAGCTACCTGACTGGACACCGGATCAGTGACGCCTGCAGGCTGGCTCAGAagagtgGGGACCACCGTCTCTCCCTGCTGCTGTCCCAGGCGGTGGGCTCTCAGTACGGCCGGGAGCTGCTGGCACTGCAGCTTGGAGACTGGAACAGGATGCAGACAGACTCTTTCCTGCCGGAGGAGAGGCTACGGATCTTTGCCCTTCTCGCTGGGAAACCTGTGTGGCAGTCTACAGACTGTGTGGTGAATGTGTGTTCAGAACTGGACTGGAAGCGTTGTATGgcggtccacctgtggtacatgcTGCCTCCCACCGCCTCCATTGCTGAAGCCCTGGTGAAGTACGAGGCTGCCTTCCAGGGCTCTGCTGAGGGTCAGAAGTATGCCTGCGCCCCCCTTCCCCCCTACCTCGACCAATCAGACCAGCCGGACATGGAGGAGGAAGAGTCTAAACGGCCGCTTTACGATATCTGCTTCCACCTGCTCAAACTCTACAGCGACAGgcaCTACAGCCTGCAGCAGTTGTTGGACCCCCTGGCGGTGACGTGGGATCGTCTTGACTACCGTCTGAGCTGGCACCTGTGGTCGGTCCTGCAGGCGCTGCACTACACACACCTCAGCCCGGCCCGACAGGGCCTCATACACACCAGCTATGCTGCCCAACTGGAGAGTGCTGGCCTCTGGGACATGGCCATCTACGTACTGCTGCACATACCTGACAACGCGCTGCGTGAGCGGGCGGTGAGGGAGATGCTGCAGCtgcactgccccctgctggagacggAGGAGTCTGCCAAGAAAGAGCACTTTCTCACAGAGAGACTACTGGTCCCAGAACAGTGGCTCCACCAGGCCAAAGCTACCAGAGCCAGAAGAGACACAGACAGCCACGGAGAGGCCCTTCACCTGTACAGAGCAGGACACTGGAACCTCTGCCACAGTCTGGTCATACAGCACCTTGCCTCAGATTGCATCATTAATGATAATCATGAGTACCTCTTGAAGTTCCTGGAGGGGCTTGCAGTTCCTGAGCGCAGTGCTGTGATCCAGGACTGGGACACGGCAGGCAGAGTCTACCTGGACTACATCAGAGTCGTACAGACCCTACACGCCATACAAcagatggACATTACTGGTTATGAGCTGGAGTGTCTACACACTGAGGTGAGGTCACTCTGCAGCAGGATAGAGCTCCTCCCTTGCTCCACCGCCAAGGACCGCCTCTCCCAATCAGagATGGCCAAGCGTGTGGCTAACATCCTGCGTGTGGTGTTGAGTCTGCAGCAGGGTGGTGAGGGTGGCGAGATCCCCTTGTCCCAGCTTGCGTCCAACATCGGCCGTCTGCCCATGCCCGAGGACTATGCTCTCGAGGAGCTCCGCAGTCTCACCCAATCATATCTGAGACAGCTCATTGTCAGCTAATGATCTGCCCCCTGCCCAATAGCAACTGAGGTAGTTTGTTGGAAGCCAATGAGAACAGTGGGGGTAGGGGGGGACTATCTGGGACACTGGGGAACTACTGGGGTTTGGTATGGATGCAGCGATGGACTTGATGTGTGctcctttggaactttggtttctCCTGAAGAAAATGGCACAAGATTATTGGATGAAGCATTCCTCAGTGTGTGGAAATGAATGACTTGCAAGTTTTTGTATAGCTCTGGTGTACTTAGTTTGTGTAAGATGTGTTTATAAATTGAACTGCTGAACCCTCCTAATACTCACCTTTCCCAGCGTTTGACCctgtttaaaggggcaatctcaTTGGCTGGTGTGTGTACCGCCAGTATAAATGCTTTCTGCAAACTGTTTGACTTGTTTTACATCAACGTGGAAACTTAAAGGTCATTATAGTAATATTGGTTCGGGAGCTGTCAGGGATGAACTGTCAACATGTGTATACATAGGGAAGATCTATAGCTGAAAATGGACAATACTCATGTAAATTGTACAAATAGCAGGCTTGAAATGAACAATTCTTGTTTTTGGATACCAAAAGACAGAGAATGTAAAATGAGAATGGTTAAACTTATATTTTTGTAGTTTTTTGTTGTATATTGTCTGAAACCCAGAGTATGTGTGAAGTGTATTGGAATGGAATCTAACTAGCACTTAATCACATATGTTTCAGATTTCTATTTTATGGGAGACTACCAGAGCTGGTTTTTGTAATCAGTGATCCAACAATAGTTTGTTTTTAATGAGCCAATCCATTTTCTCTGGTCTTTGCAAGGAGTTTGAAAGATAttttaaatattatttacaaGTCCTTGGTGTTACCACCCTCCATTCTCATTCTTTGTTCCCCTTTCTCTCTAGTTTTCTGAATTTAGATTTTAAGAGAAATGTACTTATTGATTGTTGTGCTGCTGCCGCAGTATATTTTGGGTGGGAGACCGCTCCCCTCGTGCACAGTGCCTTTTACGAGGAGGGTCTCCGGACTACTGTTGCTGCCGTTGCTTTGTGCACGATTGTGATGGTGATAACATTTTTATTAGTCTGAATAAAATGCATTCTATTTTCTCCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1002010 lncRNA upstream 2846 34086861 ~ 34087082 (+) True G880560
TU1002009 lncRNA upstream 3949 34085556 ~ 34085979 (+) True G880559
TU1002008 lncRNA upstream 6528 34083060 ~ 34083400 (+) True G880558
TU1002006 lncRNA upstream 8602 34081114 ~ 34081326 (+) True G880556
TU1001944 lncRNA upstream 103270 33986457 ~ 33986658 (+) True G880497
TU1002897 lncRNA downstream 68094 34188929 ~ 34189163 (+) True G881377
TU1002899 lncRNA downstream 69097 34189932 ~ 34190181 (+) True G881379
TU1002930 lncRNA downstream 91454 34212289 ~ 34212568 (+) True G881409
TU1002976 lncRNA downstream 147033 34267868 ~ 34268370 (+) True G881449
TU1003010 lncRNA downstream 202111 34322946 ~ 34328278 (+) True G881480
XM_021618137.2 mRNA upstream 42222 34044472 ~ 34047706 (+) False LOC110533688
XM_036990095.1 mRNA upstream 176512 33730284 ~ 33913416 (+) False dscama
XM_036990092.1 mRNA upstream 176512 33730286 ~ 33913416 (+) False dscama
XM_036990093.1 mRNA upstream 176512 33730288 ~ 33913416 (+) False dscama
XM_036990096.1 mRNA upstream 238382 33730265 ~ 33851546 (+) False dscama
XM_021618146.2 mRNA downstream 1886 34122721 ~ 34141656 (+) True LOC110533691
XM_021618147.2 mRNA downstream 61177 34182012 ~ 34184477 (+) True LOC110533692
XM_021619812.2 mRNA downstream 88969 34209804 ~ 34211775 (+) True LOC110534890
XM_021618149.2 mRNA downstream 178558 34299393 ~ 34322532 (+) False LOC110533694
XM_021618150.2 mRNA downstream 178594 34299429 ~ 34322532 (+) False LOC110533694
TU1001973 other upstream 42204 34044494 ~ 34047724 (+) True LOC110533688
TU1001972 other upstream 42250 34044494 ~ 34047678 (+) False LOC110533688
TU1001481 other upstream 788190 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 955014 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 1044429 32981866 ~ 33045499 (+) False LOC110533671
TU1003053 other downstream 313707 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 316505 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 337959 34458794 ~ 34470378 (+) True rnasekb
TU1003061 other downstream 365985 34486820 ~ 34488714 (+) True LOC110534915
TU1003072 other downstream 368985 34489820 ~ 34494101 (+) True G881536

Expression Profile