RNA id: XM_021618146.2


Basic Information

Item Value
RNA id XM_021618146.2
length 2693
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110533691
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34122721 ~ 34141656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAACCAGCTCTGTGCGCAGCTGTCTCTTCGCAGCGCGTTTCAGGCCTACGCTGAACTCCCCAAATACGGTAAATTCTCTCAGCTGTAGGGGGCTATTTTGCTCTTCTGCCCGCTGTGTCAAACAACTCGGCATATTGTGCCAGTTCAGCACCATGCATCTATGGAGAGTCTTTTCTACGTGGCTATTCTTCCTCTGTTTTAGTTTTCTTCCAGtgtGTCTGGGTGCTCATGGGAGATATGCTCAGAAGTTGTTGACTGATTTGTTCGCTAACTACACCAACGCTCTGAGACCGGTAGAGGACACAGACCACATCATTAACGTCACACTGCAGATCACCCTCTCACAGATCATTGACatgGATGAGCGGAACCAGATCCTGACCACGTACCTGTGGATCCGGATGGTGTGGACGGACGCCTACCTCACTTGGAAGAAGGAGGACTACGATGGTCTCGATACCATCCGCATACCTAGTAGTTATGTATGGAGGCCTGATATTGTCCTATATAACAAtgctgATGACCAGTTCTCCAGCTCTATGGAGACCAACGTGGTGATCCGTAACGACGGACAGATCATGTGGGACCAGCCGGCCATCAGTAAGAGCTCGTGCTCCGTGGATGTGTCCTTCTTCCCATTTGATGCCCAGCAGTGTCGCCTAACCTTCGGCTCCTGGACACACAACGGCAACCAGATGGACCTGGTCAACGCCCTAGACAGCGCTGACCTGGCCGACTTTGTGGCCAACGTAGAGTGGGAGGTTCTGGGTATGCCAGCCAAGAAGAACGTGATCCTGTATGGCTGTTGCTCAGACCCCTACCCAGACATCACCTACACCCTGCACCTGAAACGCAGGGCCTCCTTCTACATCTTCAACCTACTCATCCCCTGCATGATGATCTCCTTCCTGGCCCCGCTGGGCTTCTACCTGCCGGCTGACTCTGGGGAGAAAGTGTCCCTGGGGGTCACTGTGCTGCTGGCCCTGACCGTGTTCCAGCTGCTGGTGGCAGAGAGCATGCCACCCTCGGAGAACGTACCACTCATAGGGAAGTACTACATTGCTACCATGACGATGATCACCGCATCGACCGCCCTGACTATCTTCATCATGAATATCCATCACTGTGGTCCGGAGGCGCGTCCCGTCCCTGAATGGGCCCGCCGCTTCATCCTGCACTACCTGGCACGGATCTGCTTCGTCTTCGAGGTGGGAGAGAACTGCTTCACTGGAACCCCCAAGAAACAGGCCCCGCCTGAGCCCCCACCCGACCACAATATCAACCCCCTAACTAGAGGTACTAACTGGGATGTGAACGGGCAGGCCTGGGGGGGCATGGAAGGGAGGGGTGAAGAGGAAGTGGGAGGGGTGGGCATAAAGACTccggaagagaaagaggaggggaataGACTGGATGTGAAGAAAGGGTCATACCAAATGTTTGAGCCCAGTAGGTGGAAAGACGACCTGTTTGTAAGTATAGatgcagaagaggaggaggagggagcagcaggaagggagaagggagaaggaggagaggcagaaagagagaattGTTTCAGAGGAAAAATTGGGTGCATGGGAGGGGCAGAGGAAAAAAAAGgcaaaggtggaggaggaggagagagaggctgtgtggaAGGAGGAGGTGAAAGAAGGAAAGGATCATTAGGAGGTGCAGAGGATAGGGGTaggagggaggtggtggtgagcgtccagtgtgtgtgtcagcaccAGGCGCTCCGCAGGAACATAGAGTACATCGCCAGCTGCTATCATGACCAGCGTTCCACTCAGAGACGTACGGGTGAGTGGAGGAAGGTGGCCAAGGTCATGGACCGACTCTTCATGTGGCTCTTCTTTATCATGGTCTTCCTCATGAGCCTCCTCATTATGGGCAAGGCCGTCTGAGCAcgtgcagagagcagagggagaagaCTCCAGGTACAAGTGACCCTCAGgcacagatctaagatcagatccTACCCTTCCCAAATGCTGACCTTAACCATTAAGGAGGATCccaaactgaccttagatcagtgtctaatGGTAACTTTATCCTACTCCGAGGGGCATTAGGCCAACTAAACCATTCAGTGTTTACCACTGGAGATACTGTGTGTGGGGTTTTGTACGTACTGTATACTAGCTGTTAATATTCAGCAATGTGAGGTAGACTTAATTGATCTCATTTCATACAGAAGTAGTTTTCTGTGAGTCTAAAGTGTTTGTAGGGGAGACAGGAACAAACTTCATCTGTGAAATGGAGCCAAAGTAATTCTTCTGCCACCTGGCGACTATTATAAACACACAGTTTAACAAGTCCACATTTTTATATTACTATAACCTTTAACGCTCTTCGTCCTTTTACTGATTTACTGTATGTGAATAATCCATTAGACAATTGTATTTTTAAGTGTACTTCTCAGGCCTGCCTGTCACTATATGAGAACGACAGTACTTTATGAGTGCACACCTGAGAAGTGCACACTTTCTTTGAGTGCACTTGACGCTGTTGAAGATTTGATGTGTAGATATAGTATAGAATGACAATGCTAAAATAATAGTAGTGGTCCATGCTTAAGAAGACTAATGTATCCAATGCTTATCACTTGTCTTGTACCATAAACAATATTACATATGTACAAGTACGccattaaatgtattaaatatttcaTAATATCCAAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1002010 lncRNA upstream 35639 34086861 ~ 34087082 (+) True G880560
TU1002009 lncRNA upstream 36742 34085556 ~ 34085979 (+) True G880559
TU1002008 lncRNA upstream 39321 34083060 ~ 34083400 (+) True G880558
TU1002006 lncRNA upstream 41395 34081114 ~ 34081326 (+) True G880556
TU1001944 lncRNA upstream 136063 33986457 ~ 33986658 (+) True G880497
TU1002897 lncRNA downstream 47273 34188929 ~ 34189163 (+) True G881377
TU1002899 lncRNA downstream 48276 34189932 ~ 34190181 (+) True G881379
TU1002930 lncRNA downstream 70633 34212289 ~ 34212568 (+) True G881409
TU1002976 lncRNA downstream 126212 34267868 ~ 34268370 (+) True G881449
TU1003010 lncRNA downstream 181290 34322946 ~ 34328278 (+) True G881480
XM_036990097.1 mRNA upstream 1886 34089737 ~ 34120835 (+) False LOC110533689
XM_021618138.2 mRNA upstream 1886 34089928 ~ 34120835 (+) False LOC110533689
XM_021618139.2 mRNA upstream 1886 34089928 ~ 34120835 (+) False LOC110533689
XM_021618140.2 mRNA upstream 1886 34089928 ~ 34120835 (+) False LOC110533689
XM_021618143.2 mRNA upstream 1886 34089928 ~ 34120835 (+) False LOC110533689
XM_021618147.2 mRNA downstream 40356 34182012 ~ 34184477 (+) True LOC110533692
XM_021619812.2 mRNA downstream 68148 34209804 ~ 34211775 (+) True LOC110534890
XM_021618149.2 mRNA downstream 157737 34299393 ~ 34322532 (+) False LOC110533694
XM_021618150.2 mRNA downstream 157773 34299429 ~ 34322532 (+) False LOC110533694
XM_021618151.2 mRNA downstream 157781 34299437 ~ 34322532 (+) False LOC110533694
TU1001973 other upstream 74997 34044494 ~ 34047724 (+) True LOC110533688
TU1001972 other upstream 75043 34044494 ~ 34047678 (+) False LOC110533688
TU1001481 other upstream 820983 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 987807 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 1077222 32981866 ~ 33045499 (+) False LOC110533671
TU1003053 other downstream 292886 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 295684 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 317138 34458794 ~ 34470378 (+) True rnasekb
TU1003061 other downstream 345164 34486820 ~ 34488714 (+) True LOC110534915
TU1003072 other downstream 348164 34489820 ~ 34494101 (+) True G881536

Expression Profile