RNA id: XM_036989344.1


Basic Information

Item Value
RNA id XM_036989344.1
length 939
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110534893
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34247477 ~ 34248415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGAACCACACATTCAGCTTGGACCTTCTCAAGCTAGAGGGGGTTAAAGTCATCCACCAGTCCACCTACCCTGCCTTCATACTCCTCCTTATCATCTACATCTTCACAATGGTGGCCAACATCGGCCTCACAGTGCTAATCTGCATGGAAAGGAGCCTGCACCACCCCATGTACATCCTCCTTTGCAACATGTCTTTCAACGATGCTCTCAGTATCACCACCATCATACCTCGAGTGCTGTTCGACATTTTAACACCTAGATCAGAGAGATATATTACCTACAATGAGTGTTTCACCCAAGCATTTTTGGGTCACTGGTTTGGTTCAAACTTTCATACGATACTGATGATCATGGCTTTTGACAGGTATTTGGCCATCTGCAACCCTCTGCGATACGCCACCATCATGAACAACAAAATGCTGGtgaagctgtgtgtgtttgcctgggtGGTGTCCCTTGTCTTTGTGGCTGTCCTCCTGGGCCTCACCCTCCGCTTGTCACGCTGCAGGTCGGAAATCATCAACCCTTGGTGTGACAATGCCTCATTATTCAAGCTCTCCTGTGAGAGTGTGCTTATAAATAACATTTATGGACTATTTTTCACCACTATCTTCTTCATCGCCTCCATGGGGAGTGTGGCTCTGACATACATTAGAATCACCATGGTGTGTGTGAGGAGTAAGAGCAAGTCGCTAAACAGCAAAGCTCTGCACACCTGTTTCACACACCTGGCTGTATACCTCATTATGCTGATGACAGGTTTCATCATTGTCTTTCTTCATCGCTACCCTGAGTGGTCAGACCACAGGAAACTTGCATCAATTATGTTTTATGTGGTTCCTCCTGCACTGAACCCCATTATCTATGGGCTGCAGTCCAAAGACATTCGCAAACTAGCTGTAAATATCTCCCATTGCAAGAAAGTTTCACCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1002918 lncRNA downstream 40317 34206931 ~ 34207160 (-) True G881398
TU1002904 lncRNA downstream 54025 34193098 ~ 34193452 (-) True G881384
TU1002900 lncRNA downstream 57349 34189907 ~ 34190128 (-) True G881380
TU1002857 lncRNA downstream 97121 34150150 ~ 34150356 (-) True G881340
TU1002829 lncRNA downstream 128698 34118305 ~ 34118779 (-) True G881318
TU1003300 lncRNA upstream 85686 34334101 ~ 34334345 (-) True G881754
TU1003301 lncRNA upstream 86653 34335068 ~ 34335426 (-) True G881755
TU1003303 lncRNA upstream 87612 34336027 ~ 34336346 (-) True G881757
TU1003308 lncRNA upstream 91945 34340360 ~ 34340748 (-) True G881762
TU1003309 lncRNA upstream 92407 34340822 ~ 34341143 (-) True G881763
XM_036989343.1 mRNA downstream 13282 34233136 ~ 34234195 (-) True LOC110534892
XM_021619831.2 mRNA downstream 21588 34224948 ~ 34225889 (-) True LOC110534914
LOC110534891 mRNA downstream 29911 34212587 ~ 34217566 (-) True LOC110534891
LOC110534889 mRNA downstream 62038 34184934 ~ 34185439 (-) True LOC110534889
XM_021618135.2 mRNA downstream 274188 33939435 ~ 33973289 (-) False LOC110533687
XM_021618148.2 mRNA upstream 21246 34269661 ~ 34270652 (-) True LOC110533693
XM_036990102.1 mRNA upstream 101108 34349523 ~ 34356076 (-) False serpinf1
XM_036990100.1 mRNA upstream 101108 34349523 ~ 34356133 (-) False serpinf1
XM_036990101.1 mRNA upstream 101108 34349523 ~ 34356204 (-) True serpinf1
XM_021618157.2 mRNA upstream 108080 34356495 ~ 34363371 (-) False LOC110533697
TU1002672 other downstream 274165 33939435 ~ 33973312 (-) True LOC110533687
TU1002673 other downstream 274237 33939072 ~ 33973240 (-) False LOC110533687
TU1002671 other downstream 274237 33939435 ~ 33973240 (-) False LOC110533687
TU1002474 other downstream 568638 33613325 ~ 33678839 (-) True G880994
TU1002275 other downstream 1082455 33162912 ~ 33165022 (-) False G880807
TU1003325 other upstream 164648 34413063 ~ 34417261 (-) True G881778
TU1003400 other upstream 343907 34592322 ~ 34596182 (-) True LOC110533714
TU1003456 other upstream 349952 34598367 ~ 34598675 (-) True LOC110534894
TU1003687 other upstream 644564 34892979 ~ 34893928 (-) True LOC110533718
TU1004252 other upstream 1054499 35302914 ~ 35304055 (-) True G882578

Expression Profile