RNA id: XM_021618153.2


Basic Information

Item Value
RNA id XM_021618153.2
length 3082
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110533696
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34366052 ~ 34377940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtctcacacacacaaacacagagagagagagagaaagagagagagcgagaaagatgtCATGTGCAGTCCTGTACCCAGTGTAAAGCTGGAGGTATCAGAGTTCGCTCACCCTTTCCCTCATCATTTTCGCTTTCTTTCCGGAGTGAGTCCAGACCTGCGCAACTGTAATTATCTGTATTCTCTGACCGGGAGAGGATGGTGTCCTCGCTCCAGGCGATGTGGATGTTCAAGGATGGGGTGATTCTGTTCTGCACaccgttcctcctcctcccactacCTCTGCTGATCGGAACCACGGAGGCAGGCTGTGCCTATGTGATAGCCCTGATGGCAGTGTACTGGTGTACTGAGGTACTGCCGCTGGCTGTGACTGCTCTCCTGCCCGCTGTCCTCTTCCCTTTGTTTGGCATCATGGAGTCCAAGCAGGTACGCTTCcctcacacacgcacaaacacacatgctcacactcaAAGACAATCTCTCACGTGTGTGTATCAGGTGTGTATGCAGTACCTGAAGGACACCAACATGCTGTTTGTTGGCGGGCTAATGATGGCTGTTGCCGTGGAGAAGTGGAATCTTCACAAGCGCATCGCCCTCAGAGTTCTACTCGTTGTGGGGATGCGGCCTGCCCTTCTGATGCTAGGGTTCATGGGTGTGACAGCCTTCCTGTCTATGTGGATCAGTAACACAGCCACCACAGCTATGATGGTCCCCATTGTCCAGGCCGTCCTGGAGCAGCTCAACGGCCCACGAAAGGGGGAGAACCCCCTGCCCACCCCTCAGAGCCAGGAGAATGGTACGACTCCTGAGGAAAATCTGGAGAACAGTTCGACCCCACAGGACACACTTATGATCCAGGACAATCGCATCCCACTGGAGAAACTAGCCTCAGAAGATAAACTGGACTCCCCAGACAAACCAGTTCCTCAGGACAACTCTCTGACTGATGGGAAGCCAGTGATGGTGTCCATGGTCTTGAAGGAAGGGACTGAAGCAGAGGAGCAGgttggggaggaagaggaggagaaggagaggatgaagatGTGTAAAGGCCtgacgttgtgtgtgtgttacgctgCCAGCATCGGCGGCACTGCCACTCTAACTGGCACCGGACCCAACCTTGTCCTCACAGGGCAGATGAGCCAACTCTTCCCTCAGAACGGTGACGTCATTAACTTTGCCTCATGGTTCGCCTTTGCCTTCCCCACCATGCTGCTGATGCTGACGCTGGCCTGGCTCTGGCTCCAGCTCGTCTTCATCGGCTTCAAtcTGAAGCGTACATGGGGCTGTGGTGCTGTGCAGTCAGAGAAGGAGCTTGCGGCATATGATTTGATAAGTGAGGAGCATCGTCGTCTGGGGCCCATGTCTTATGGAGAGCTGAGTGTCCTGGGGCTCTTCATCCTGCTGGTGGTGCTTTGGTTCACACGAAGCCCAGGCTTCATCGATGGATGGGCAACCCACGTCTTCAATGCCAAAGCACCgtTTGTAACTGATGCCACAGTGGCGGTGTTTGTTGCCATGCTGCTGTTCGTCTTGCCCTCTGAGCCCCCCCGCTACCTCTGCTTCTGGAGAACACAGAGATTTGACACAGAGCCCCAGCCCACCCGTGGCCCCGCCCCTGCCCTGCTGACCTGGCAGGTGACCCAGAGGAAGATGCCCTGGAGCATTGTACTGTTGCTAGGAGGAGGCTTCGCACTGGCTAAGGGcagcgagGTGTCTGGTCTGTCGCGGTGGCTGGGTGATCAGATGATGCCTCTCTGCTCCGTCCCTCCCTGGGCCATCGCTGTCATCCTCTGTCTCCTCATTGCCACCTTCACTGAGTGTGCCAGCAACGTGGCTACCGCTACACTCTTCCTGCCCATCCTCGCCTCCATGTCCCAGTCCATAGGGTTGAACCCGCTGTATGTGATGGTACCCTGCACTCTTAGTGCATCCTTTGCCTTCATGCTGCCTGTGGCCACGCCTCCTAATGCCATCGTGTTCTCTTATGGATACCTGAAGGTGTCAGACATGgCTAAAATGGGTATAGTGATGAACATCATTGGGATCCTGTGCATCACTCTGGCCATTAACAGCTGGGGTAGAGCTATGTTCAACCTGGACACCTTCCCCTCCTGGGCCAACACCACCGCGAACATCactacaggaggaggaggggggaaatGACCCCAAATATACCACCATACGCCCCTGTACTGCCATTTCACTGCTACCGATGCCAAAAGGGGATGAGGAAGGGGGAGTATTACCAAGAGACCACAGAAATTTCTCCAACAACACTACTAGCCTCGCTGGGGCAACAGAAGGCTGGCCATGAGAGCACTGTTATGGTCTGGTGAacacatgcgcgcgcacacacacactgggataGTTTCCAGCTGTGCCATCACCGTACCGGTTTATTATCAGTGTATTTTCTACTGTTCGGGACTTATTCTTATATTATATTGTTATGACACTAGAGAGCCTTAGGGAACAGGGATGATAAATAACTTGCAAAGCCAAGACATGCTGTAATACTGTAACTTATATTGTTATTACTGACAATATTGTTATATCAATTTATATTCTATAATTGTATTATATTACAGGGATCATCAACATGGAGACTACAAATTGACTGCCCAAACAAATATAATATTTGAATAAAACATAATCATtgcaaaccttgcttacatttgtatacgatcacacaTATCGCTCTATTATCCGTGGGAATAATTTGGAACAGATTTTCCTAATTAAAATCTCTTGGAGCTGATTTTCTGGCATTttcagtcttttatgtccaacaatcaAAAAAAGAGAATAATAAGTTTTGCACAGAACTTGGAGGCCAAATAAAATAATCTGCgggctgccagttggggaactCTGTTAGATTACATCAATTAGGATAAATTATTTTCAGTAAGTGTAATTAATTAGATATTTTGTATAGTTATCAATGTAAATGATTGACTTTTGTAAGAGTTTAGAGTTGTTTTTTCCATTCCAATAACAACCTATTATGGTTttgtatattgtactgtatttgtttagtttttttgctGAATAAAGTCTGTACTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1003029 lncRNA upstream 108 34364713 ~ 34365944 (+) True G881498
TU1003030 lncRNA upstream 2054 34363766 ~ 34363998 (+) True G881499
TU1003018 lncRNA upstream 32586 34333060 ~ 34333466 (+) True G881488
TU1003016 lncRNA upstream 34003 34331730 ~ 34332049 (+) True G881486
TU1003010 lncRNA upstream 37774 34322946 ~ 34328278 (+) True G881480
TU1003036 lncRNA downstream 16079 34394019 ~ 34396839 (+) True LOC110533701
TU1003037 lncRNA downstream 19585 34397525 ~ 34397781 (+) True G881504
TU1003040 lncRNA downstream 21120 34399060 ~ 34399356 (+) True G881507
TU1003067 lncRNA downstream 116615 34494555 ~ 34562820 (+) True G881531
TU1003144 lncRNA downstream 220187 34598127 ~ 34598341 (+) True G881606
XM_021618149.2 mRNA upstream 43520 34299393 ~ 34322532 (+) False LOC110533694
XM_021618150.2 mRNA upstream 43520 34299429 ~ 34322532 (+) False LOC110533694
XM_021618151.2 mRNA upstream 43520 34299437 ~ 34322532 (+) False LOC110533694
XM_036990099.1 mRNA upstream 43520 34299444 ~ 34322532 (+) False LOC110533694
XM_021618152.2 mRNA upstream 43520 34308300 ~ 34322532 (+) True LOC110533694
XM_021617187.2 mRNA downstream 2295 34380235 ~ 34387056 (+) False med31
NM_001160598.1 mRNA downstream 2318 34380258 ~ 34387045 (+) True med31
XM_021618162.2 mRNA downstream 9802 34387742 ~ 34391447 (+) False LOC110533700
XM_021618161.2 mRNA downstream 10302 34388242 ~ 34391447 (+) False LOC110533700
XM_021618160.2 mRNA downstream 10303 34388243 ~ 34391447 (+) True LOC110533700
TU1001973 other upstream 318328 34044494 ~ 34047724 (+) True LOC110533688
TU1001972 other upstream 318374 34044494 ~ 34047678 (+) False LOC110533688
TU1001481 other upstream 1064314 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 1231138 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 1320553 32981866 ~ 33045499 (+) False LOC110533671
TU1003053 other downstream 56602 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 59400 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 80854 34458794 ~ 34470378 (+) True rnasekb
TU1003061 other downstream 108880 34486820 ~ 34488714 (+) True LOC110534915
TU1003072 other downstream 111880 34489820 ~ 34494101 (+) True G881536

Expression Profile