RNA id: XM_021617187.2



Basic Information


Item Value
RNA id XM_021617187.2
length 763
RNA type mRNA
GC content 0.44
exon number 4
gene id med31
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34380235 ~ 34387056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCGTAAAAAAGTGATACTGCTGCAGTTTACGGAAAATATGGCGACATGATCGGGCTGATTTTGTTGCTGACCAGACCACAACAATTAATTCagcaaattaaaaatatattcGTTTAAACAGCTTACACATTTCCGTTTTAAGGTACCTGTTGTTTTCGTGCAGTCCCAGTCATCTTTAATGGCAGGCGTCATGGAATCAGAGGAGCAGGCAAGGAACCGCTTTCAATCAGAGCTGGAGTTCATCCAATGCTTGGCCAATCCGAATTATCTGAACTTTCTGGCTCAGAGGGGTTACCTGAGAGAAAAACCCTTTGTGAACTACCTGAAGTACCTACTGTACTGGAAGGAGCCTGAATATGCCAAATTCCTGAAATACCCCCACTGCCTGCACATGCTGGAGCTGCTTCAGTACGAGCACTTCAGGAAGGAGCTTGTGAATGCACAATGTGCCAAGTTCATCGATGAGCAGCAATTACTGCACTGGCAGCACTATTCCCGGAAACGCACCCGTCTGCAGCAGGCTCTGGCagagcaacaacagcagcaacagctgCCTCATGGCAATGCTACtgctaaatgagagagagagagagagaatctgtgGCATAAAAAAACAGGATGATTGAACTTGAATGGACATGGACTCAAATGTCAATTCAGCCTCCTGGAAATGTGTGTGATATGGATCATGGCGATGTCTCTCTTTGCTCTTATTTATGTTTCTGACTTTGTAtaataaaaataacttttggttAAAATGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1003029 lncRNA upstream 14291 34364713 ~ 34365944 (+) True G881498
TU1003030 lncRNA upstream 16237 34363766 ~ 34363998 (+) True G881499
TU1003018 lncRNA upstream 46769 34333060 ~ 34333466 (+) True G881488
TU1003016 lncRNA upstream 48186 34331730 ~ 34332049 (+) True G881486
TU1003010 lncRNA upstream 51957 34322946 ~ 34328278 (+) True G881480
TU1003036 lncRNA downstream 6963 34394019 ~ 34396839 (+) True LOC110533701
TU1003037 lncRNA downstream 10469 34397525 ~ 34397781 (+) True G881504
TU1003040 lncRNA downstream 12004 34399060 ~ 34399356 (+) True G881507
TU1003067 lncRNA downstream 107499 34494555 ~ 34562820 (+) True G881531
TU1003144 lncRNA downstream 211071 34598127 ~ 34598341 (+) True G881606
XM_021618153.2 mRNA upstream 2295 34366052 ~ 34377940 (+) False LOC110533696
XM_021618155.2 mRNA upstream 3024 34366053 ~ 34377211 (+) False LOC110533696
XM_021618154.2 mRNA upstream 3024 34366054 ~ 34377211 (+) False LOC110533696
XM_036990104.1 mRNA upstream 3024 34367668 ~ 34377211 (+) True LOC110533696
XM_021618149.2 mRNA upstream 57703 34299393 ~ 34322532 (+) False LOC110533694
XM_021618162.2 mRNA downstream 686 34387742 ~ 34391447 (+) False LOC110533700
XM_021618161.2 mRNA downstream 1186 34388242 ~ 34391447 (+) False LOC110533700
XM_021618160.2 mRNA downstream 1187 34388243 ~ 34391447 (+) True LOC110533700
XM_036990105.1 mRNA downstream 4654 34391710 ~ 34397234 (+) False LOC110533701
XM_021618163.2 mRNA downstream 4660 34391716 ~ 34397234 (+) False LOC110533701
TU1001973 other upstream 332511 34044494 ~ 34047724 (+) True LOC110533688
TU1001972 other upstream 332557 34044494 ~ 34047678 (+) False LOC110533688
TU1001481 other upstream 1078497 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 1245321 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 1334736 32981866 ~ 33045499 (+) False LOC110533671
TU1003053 other downstream 47486 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 50284 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 71738 34458794 ~ 34470378 (+) True rnasekb
TU1003061 other downstream 99764 34486820 ~ 34488714 (+) True LOC110534915
TU1003072 other downstream 102764 34489820 ~ 34494101 (+) True G881536

Expression Profile