RNA id: TU1003036


Basic Information

Item Value
RNA id TU1003036
length 2050
lncRNA type sense_over
GC content 0.39
exon number 5
gene id LOC110533701
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34391710 ~ 34397234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggaatgggaggaggAGGACTATGGAAGGTGTCGAGTTACTGTTTTCTCATCTAGATTCCACAATCACAGAAATCTACAGTTATGCTACACCAACAACAGTGAGAGCGAGGATGATGATACGGAGGAAGGGGCTGGCAAAGAGGGTTCTAAAGAGGCAGGTAGCCATGGTTACCATCCCTCTGGCCTGAAGCTGGAGGTGAGGGCCGCTCTGAGTGCGCTTAAAAACAAGCTGCTCGCTgaacagaaagagaaggagcacCTCGCCTGTGTGATCACTAAGAGGAAGCATCTGGAATGCTGTGACCTGCAGATCTGCTCAATACAACAGCTCAGTTCCCTCAGGACCTCACTCAACCATGACGTACACGACCTGAGCTCTGAGTTGGTGAGTCACCTGTTGATAAGGGACCAGCTGAGGACCAAACAGGATGCCATGCTCCTGGATGTACAGGATCTGACATAATGTTGACCCACAGGTGCACAGGATGTGACATCACCACTGCCATGGACAGGGTACCAGGACAGGAAGTCATTGTGACCAATAGTGGATAAAGTGATTTTGGCCCAGATATGCCACAATGAGACTGTCAGAAGTATTGCCATAATAGCCTACTCAACATGATTTTTCGTAAAGGAGAAATGTTGATTATGAGCAAACTGATGAGCAACATCTTGGACCGGTGTCATAACTTTCTCTTCATCATCCCCACCTGATCTTGACCAGCGTAATATTCATCATCATTAGTGGAGAGAGTACTGTATTAGGACCTGTTTTGACTTACGCATGCACTTAACCAAAAATATTTAATATCAGAAAGGGTTTTAAGCCATTTGTGATGTTGTTTGAAACATCTCTAGTAATATCTGACTCATAGTCTTTTGCCTGTGGTAAGAAAGTCCTATTTATCTTGGGGGTGTCAGATGGAGAACCTTCACAGCCATATTGTAACCCAACATTCAATGAGTTATATCATTTACATATATGAGGGATACCGCTTTGCATAAGTTTTATTGTGTAAGCATTGCAATATCCTTGATTTACTAATTTAAGGGAATTGTCCACTTATAGCTTGTATAAAACAAGCTAAGGAGTTACATATTCAGGCTAAAGCGAACTGTCCTGTAACAATTTGGTAGAGAAGTTTCTTTGTTGCTAATTATCCTCTATTATGTATAATATAAGCCTCGTGTAGTTGTTGATGTAAGTGAATTGTCCGCATAGTGCCCATAAGCCTGTGGGTATTGCCATTATGTATTTTATGATATACCTGGTTTGCAGCCATAACTATAACTACCACCAGCATAGGAAACTACAAAGCTGCAATTGGTCGATTGACTCCATGCCAGCATAGCCCGAAAATATTTTGTGtttctcagattgttctggcaattctcacatagaaacttcaTTGGGATGAAGGATGTTTGAtgtgctttttacatttgtaacacaaatcagattttttaaatgtatcatgATGGAAGTGGCAATTTTAGGCCCTTTTTAATCCTATGCATGACAACACCTTGGTGTCATTATACCCCTACAGGCTCTAAAATACGGACTGTCATTACATTCTGAAATACAATTTTACACATTAATTTATTCAAGATTAAAACTATTAATATTATCTCAAAAGTACCCTTTTTGATTTTGTTCAGTTTTAGACATTGTTCAAAACAATCTATTTTACTAGTACAtcacatttccagagtgggctctGTTACTTTTAAAGTTATGATTCAAAGGGAACTCCTTCTGCTGGTGATTTGCTGAATGTGCAATCCTACAgtagggctgtgattggttaattACCTATAATGTATTCTTTGTATTCTGAACAATAATATAAATGTGTCTAAAAATAAGCAAAACCAAAAAGGGTACTTTTGAGACATTAATAATGAATATAATATCTTACCTGGTTTTCTGGTGCTATGAAAGATTGTCATTTGTCTGCCATTTTAAAATATACCAGCCTGTTTCTTCCCTCTTGTATTTGTCCTGCTATCACAGTTCATTGTTTCATCATACTACAAATACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1003029 lncRNA upstream 28075 34364713 ~ 34365944 (+) True G881498
TU1003030 lncRNA upstream 30021 34363766 ~ 34363998 (+) True G881499
TU1003018 lncRNA upstream 60553 34333060 ~ 34333466 (+) True G881488
TU1003016 lncRNA upstream 61970 34331730 ~ 34332049 (+) True G881486
TU1003010 lncRNA upstream 65741 34322946 ~ 34328278 (+) True G881480
TU1003037 lncRNA downstream 686 34397525 ~ 34397781 (+) True G881504
TU1003040 lncRNA downstream 2221 34399060 ~ 34399356 (+) True G881507
TU1003067 lncRNA downstream 97716 34494555 ~ 34562820 (+) True G881531
TU1003144 lncRNA downstream 201288 34598127 ~ 34598341 (+) True G881606
TU1003145 lncRNA downstream 202700 34599539 ~ 34600021 (+) True G881607
XM_021618162.2 mRNA upstream 2572 34387742 ~ 34391447 (+) False LOC110533700
XM_021618161.2 mRNA upstream 2572 34388242 ~ 34391447 (+) False LOC110533700
XM_021618160.2 mRNA upstream 2572 34388243 ~ 34391447 (+) True LOC110533700
XM_021617187.2 mRNA upstream 6963 34380235 ~ 34387056 (+) False med31
NM_001160598.1 mRNA upstream 6974 34380258 ~ 34387045 (+) True med31
XM_021618165.2 mRNA downstream 25699 34422538 ~ 34435620 (+) False hsd20b2
XM_021618166.2 mRNA downstream 25699 34422538 ~ 34435620 (+) False hsd20b2
XM_036990107.1 mRNA downstream 25699 34422538 ~ 34435620 (+) False hsd20b2
XM_021618168.2 mRNA downstream 40287 34437126 ~ 34442327 (+) False LOC110533705
XM_021618171.2 mRNA downstream 61930 34458769 ~ 34472268 (+) False rnasekb
TU1001973 other upstream 346295 34044494 ~ 34047724 (+) True LOC110533688
TU1001972 other upstream 346341 34044494 ~ 34047678 (+) False LOC110533688
TU1001481 other upstream 1092281 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 1259105 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 1348520 32981866 ~ 33045499 (+) False LOC110533671
TU1003053 other downstream 37703 34434542 ~ 34435418 (+) True hsd20b2
TU1003066 other downstream 40501 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 61955 34458794 ~ 34470378 (+) True rnasekb
TU1003061 other downstream 89981 34486820 ~ 34488714 (+) True LOC110534915
TU1003072 other downstream 92981 34489820 ~ 34494101 (+) True G881536

Expression Profile