RNA id: TU1003053



Basic Information


Item Value
RNA id TU1003053
length 728
RNA type TUCP
GC content 0.41
exon number 2
gene id hsd20b2
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34422538 ~ 34435620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTTACAGTATCCTTCCTTGCATCTTTGTGTTTCTTCCAATCGCTTGTGCTTTCTTAATTTCCTCTCCTTTAGTGTGTGGCTCCCTTTATGGTGTCCACTAACATGACCCACAACTTGCCCCCCAACCTGTTGTTGAAGAGTGCCAGTGCTTTTGCCCGTGAAGCTCTGAACACAGTGGGTCACTCTAGCTACACCAGCGGCTGTGCCTCTCACGCTCTTCAAAACATTGCTCTGTCCATTTTCTTCCCTGATTGGCTACGCCTTTCATCCTACTGTGTGAAGCAGACAGAGAAATTTGCACAGAGCATGGAGAAGAAAATTGATGAAATGACAGAACGTTCTGCGAGCAAAGAGGACTAAGGAGTGCAAAGGAGGTTGCTACTGAAACATTTGTGGTGCTTTAAAGAGGTCATATTGGAAATTGATATGAGAAGTTTTACTTCATATGTAGACAACTAATTGATCAATGTTACTGTTTTTGCATTGACTGCCATTGAAAGGTATTGGTAATAGGAAATAGATTGTGTAATGTTGATGTGATGTAAACAAGCTGACCCCAAATCCATCATGAACTATATAGCCTGAGTGCAGCAGAGTATGATCTGTGGGAGACGCAACTCTCAAACAGGCTTCTATAGTACATATATTAGCTATATACTTATTAGGGATATAGACTACAACATTACAACTGAATGCTTGAACATATGCATGTTCTGGTTGATTTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1003040 lncRNA upstream 35186 34399060 ~ 34399356 (+) True G881507
TU1003037 lncRNA upstream 36761 34397525 ~ 34397781 (+) True G881504
TU1003036 lncRNA upstream 37703 34394019 ~ 34396839 (+) True LOC110533701
TU1003029 lncRNA upstream 68598 34364713 ~ 34365944 (+) True G881498
TU1003030 lncRNA upstream 70544 34363766 ~ 34363998 (+) True G881499
TU1003067 lncRNA downstream 59137 34494555 ~ 34562820 (+) True G881531
TU1003144 lncRNA downstream 162709 34598127 ~ 34598341 (+) True G881606
TU1003145 lncRNA downstream 164121 34599539 ~ 34600021 (+) True G881607
TU1003175 lncRNA downstream 213129 34648547 ~ 34648928 (+) True G881633
TU1003161 lncRNA downstream 238552 34673970 ~ 34674617 (+) True LOC110533716
XM_036990105.1 mRNA upstream 37308 34391710 ~ 34397234 (+) False LOC110533701
XM_021618163.2 mRNA upstream 37308 34391716 ~ 34397234 (+) False LOC110533701
XM_021618162.2 mRNA upstream 43095 34387742 ~ 34391447 (+) False LOC110533700
XM_021618161.2 mRNA upstream 43095 34388242 ~ 34391447 (+) False LOC110533700
XM_021618160.2 mRNA upstream 43095 34388243 ~ 34391447 (+) True LOC110533700
XM_021618168.2 mRNA downstream 1708 34437126 ~ 34442327 (+) False LOC110533705
XM_021618171.2 mRNA downstream 23351 34458769 ~ 34472268 (+) False rnasekb
XM_021619832.2 mRNA downstream 51294 34486712 ~ 34488757 (+) False LOC110534915
XM_021618175.2 mRNA downstream 93302 34528720 ~ 34535561 (+) False taf9
XM_021618176.2 mRNA downstream 93653 34529071 ~ 34535561 (+) False taf9
TU1001973 other upstream 386818 34044494 ~ 34047724 (+) True LOC110533688
TU1001972 other upstream 386864 34044494 ~ 34047678 (+) False LOC110533688
TU1001481 other upstream 1132804 33300765 ~ 33301738 (+) True G880069
TU1001378 other upstream 1299628 33131145 ~ 33134914 (+) True LOC110533672
TU1001241 other upstream 1389043 32981866 ~ 33045499 (+) False LOC110533671
TU1003066 other downstream 1922 34437340 ~ 34443357 (+) True LOC110533705
TU1003062 other downstream 23376 34458794 ~ 34470378 (+) True rnasekb
TU1003061 other downstream 51402 34486820 ~ 34488714 (+) True LOC110534915
TU1003072 other downstream 54402 34489820 ~ 34494101 (+) True G881536
TU1003162 other downstream 187223 34622641 ~ 34633907 (+) False LOC110533716

Expression Profile