RNA id: XM_021618177.2


Basic Information

Item Value
RNA id XM_021618177.2
length 2371
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110533713
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 34546928 ~ 34589309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTTTCTGCTTTCTGTCAAACTCAGACACCATGTTCTGTTCCCGGGGGCTTGGAGATTTCTTGGAGCGTAGTCTGAATGCCACTCAGAGGAGTGCGTAAACAGGAATCTGGGCTTCAGACTCCGCGCTGGGTTTATCCTAAAGAACTGAACTAATCGATATGAGCCGCCCGTCCTCTGCGGGCGGTGGGGGCGGAGGACTCGGTTCCGGGAAAGCAGGCGGAGGAAAGCACGGCGGTTCGGGGGGAGCTGCTGCCTCAGCTGCAGCGGCCGGAGTAGGAGCTGTGGCCGGGTCTGGCTCGGCTCTACCTGTCGCTGCTGTTGCCTTGCCCTCAGCATCGCTACATGGACAATCTGCTGAACTTACAGCCTTGTTCGAGTGCCCGGTTTGTTTTGACTACGTTCTGCCACCGATTCTGCAATGCCAGGCCGGACATCTTGTTTGCAACCAATGTCGTCAAAAGCTGAGTTGTTGTCCGACTTGTCGCGGCCCTCTCACCCCGAGTATCAGGAACTTGGCTATGGAAAAAGTTGCTTCTACTCTACCGTTTCCTTGTAAGtATGCGTCAGCCGGATGCCTGCTGTCCCTCCACCACAGTGAGAAGCCTGATCACGAGGAGGTGTGTGAGTTCCGTCCCTACACCTGCCCGTGCCCCGGGGCCTCCTGCAAGTGGCAGGGCTCCCTGGAGGCCGTCATGCCCCACCTGATGCACGCCCACAAGTCCATCACCACCCTGCAGGGAGAGGACATCGTCTTCCTGGCCACAGACATCAACCTGCCGGGGGCCGTGGACTGGGTCATGATGCAGTCCTGCTTCGGCCACCACTTCATGCTGGTCCTGGAGAAGCAAGAGAAGTACGAGGGCCACCAGCAGTTCTTTGCTGTGGTGCTGCTCATCGGAACGAGGAAGCAGGCCGAGAACTTCGCCTACCGCCTGGAGCTCAACGGGAACCGGCGGCGCCTCACCTGGGAGGCCACGCCCCGCTCCATCCACGACGGTGTGGCGGCCGCCATCATGAACAGCGACTGTCTGGTGTTTGACACGTCCATCGCTCACCTGTTCGCCGACAACGGCAACCTGGGGATCAACGTTACCATCTCCATGTGCTGAGCGGCTCAGATGTGGAAACACAGACCCACAGGCTTCTCTCGTTTTCAGACTTACACATGTGGTGGGCAGAAACCGGTGCACAGTGACTGACTGCTGTGCTGTACCTGCCTCCTGTGTGATGCAGTAGACTGTGTGTGAGAGGATAGGTGGGATATGgagaggatgtgtgtgttttgctgCTTGAGGCTCGTTGGCTCCCCATAATGCTTGAATGGAGACTGGGCTGTAGAGTAGTTTCAGGGTTAGGGTGTTTGCCTGTCCTCTCATAATGCTTGAATGGAGACTGGGCTGTAGAGTAGTTTCAGGGTGTTTGCCTGTCCTCTCATTGTGTGTGCTGGAGACAGTGTACAGTAACCTACATGCGGTGGGCTTTTGATGACTGATGCTCTACCCGCCCCCAGGACCCCTCCTCAACCGCTCCCACCCCACTCACCCCTACCTCCTCTTCTGCCAACCAGTGCCAGGCAAGAAGGACACTGCCAGTGTAAGAAAGGGCGGTCAGTCAATTGGCTGCCACACAGCGGTATTCAGAGAACCTCCACTTCATCCGTGAATAGCCCCTGCAGATGCCGCTTCCTAATCCTCACAGCGAATTAAGTTTCAGTAAGTTGGTCAGTGGACCAATCAGGCCTCAGACGCATATGGGCAGAGTCGGGACCTGAGAGTGACCAATGTGCTGCCTCAGTCTGGGTTAGTGTGAGCTAAGCCGGGGTTGTTCATGCCCTCCTAAAGGACTGCACTGACTACTAACCAACTCCTTACTTTTCAGAACCGCAAAACTCAACCGTTTTCATAATTAGGCTGTCAATTATAAGCCCAACCCTGGTGTGTATAATAATATTGGTGATCGGTCCTGATCTGATTGGAAGTAAAAGACTGCATGTATGTCCGCCATGTAGAATAAAGACACTGATCAGGTGTTTTGGTTGTAGGCTCTCGTCATAATGCATCATAAAGGTTGCATAATGCCATCGTAAGCATGGTATCAAACCGGTCATAAGCACTTTTTGGTGAAACCCCAGGGCCTAGTTATTCACATGGATTCTGTATTACAATACAAACAACAAAGGCACATTACTTCTCCAAAGTCACACGCTCTGTTGCATAAAACTCTTATAGATTTGAAGGTTAgtccctttctttttttttttaaccctttttctccccaatttcgtagtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1003040 lncRNA upstream 147572 34399060 ~ 34399356 (+) True G881507
TU1003037 lncRNA upstream 149147 34397525 ~ 34397781 (+) True G881504
TU1003036 lncRNA upstream 150089 34394019 ~ 34396839 (+) True LOC110533701
TU1003029 lncRNA upstream 180984 34364713 ~ 34365944 (+) True G881498
TU1003030 lncRNA upstream 182930 34363766 ~ 34363998 (+) True G881499
TU1003144 lncRNA downstream 8819 34598127 ~ 34598341 (+) True G881606
TU1003145 lncRNA downstream 10231 34599539 ~ 34600021 (+) True G881607
TU1003175 lncRNA downstream 59239 34648547 ~ 34648928 (+) True G881633
TU1003161 lncRNA downstream 84662 34673970 ~ 34674617 (+) True LOC110533716
TU1003182 lncRNA downstream 95846 34685154 ~ 34685386 (+) True G881640
XM_021618175.2 mRNA upstream 11367 34528720 ~ 34535561 (+) False taf9
XM_021618176.2 mRNA upstream 11367 34529071 ~ 34535561 (+) False taf9
XM_036990110.1 mRNA upstream 11367 34529138 ~ 34535561 (+) True taf9
XM_021619832.2 mRNA upstream 58171 34486712 ~ 34488757 (+) False LOC110534915
XM_021618171.2 mRNA upstream 74660 34458769 ~ 34472268 (+) False rnasekb
XM_021618183.2 mRNA downstream 20760 34610068 ~ 34618970 (+) True slc25a14
XM_021618184.2 mRNA downstream 33100 34622408 ~ 34674877 (+) False LOC110533716
XM_036990115.1 mRNA downstream 133560 34722868 ~ 34741451 (+) False LOC110533717
XM_036990114.1 mRNA downstream 146236 34735544 ~ 34741451 (+) True LOC110533717
XM_021618187.2 mRNA downstream 356418 34945726 ~ 34949276 (+) False LOC110533719
TU1003072 other upstream 52827 34489820 ~ 34494101 (+) True G881536
TU1003061 other upstream 58214 34486820 ~ 34488714 (+) True LOC110534915
TU1003062 other upstream 76550 34458794 ~ 34470378 (+) True rnasekb
TU1003066 other upstream 103571 34437340 ~ 34443357 (+) True LOC110533705
TU1003053 other upstream 111510 34434542 ~ 34435418 (+) True hsd20b2
TU1003162 other downstream 33333 34622641 ~ 34633907 (+) False LOC110533716
TU1003587 other downstream 219294 34808602 ~ 34811529 (+) True G882013
TU1003805 other downstream 486290 35075598 ~ 35075967 (+) True G882202
TU1003830 other downstream 518154 35107462 ~ 35109391 (+) True G882225
TU1003871 other downstream 572040 35161348 ~ 35163506 (+) True G882265

Expression Profile