RNA id: XM_036990128.1


Basic Information

Item Value
RNA id XM_036990128.1
length 4890
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC110533732
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35250655 ~ 35292455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGAGTCCGCAGACGAAATTGTAAATAGCCTCCTGGAGCCGAGTCAATTGATAGAGGTGGAGAAAAGGGCAGACATATACATTTAGAAAAAAAACGTCGTATAGAAAATTCGTAGGCTACTCGGTCAGGCGGGCAGATATGTTGACTCGACCATCGAAAAAAACGACGTCACATCGGGTTGAACGAGACGCGCATTATATAATCTTCATAAACCTGCCTCGTTGcatccgtttttttttttatcaaccaATGGCCTCTTCTGGACAGCTATGCATATGAATATAAATGCAAATATCTGGTAGCGCACTGCTTGAACCGAAATGTCTgtgtttatttgtgctgttgttATTTTTAGCCAAAACCATCCATGTTTCATCTGATGGTTCCGAAAAGGCGCATAATTTAATAGcattacattattttatttgtgAATGGGGTTTATCACTCTGTTTTTTTGGAGAGGAACATTTTTATAACGTCGCAATGAACTGCATCATGGATTTCAATCCGATTTCTTAGGGTATGGTGCCGGTTTAATCGGTGGAAAGAGGGAAACGCTGTTCATGTAAACAAGAACCGAGAATCCTCTCAGATCCGCCCCATTTATTTATTATATCTTTCAGTATTTCTTGACACATTTGGAAAAGTGTTTTTTTCTACCGTTCTTCCACAAAGACGGCAATGTCATCATCAACATCCCGGCGTGGTTTTGTTGTTGTCTGATTTTACTACTGGATATCGGCAGTTATCCCTGCGCCAAGCCATACATCAGTATTTCTATAAGGTGACTCAAGCTTGGTCTGCAGTGACATTCATCAACTTCACACTATTGGTCTTCTATACCATGAGCTCTGGCTCCGCCCAGGATGTGGCGGTGGAGCATTTCTTGCGTGACATAGAGAGGAGGGgcaagcggctacattgcgctgtgattggctgcGAGGAGGAGCAGTGTCCCCGCGGCGACATGAACCTGCTGTATCGTAAGAGCCGGCTGGACTGGAGGCACAAGGACCAGGAAGGCAATaagaagagCTCCAGCCAGAAAGACCCCTCCTCAGCCACGGTGGGCAAGGTCCGTGACCTGGCGTCCTTCCGACGCCACTTCCGCATGGGCTTCATGACCATGCCTGCCTCCCAGGATCTGTCCCCTCACTCCTGTGCCTCTGCCATGGCCCCCCGCTCCCAGTCCTGCCATGCCGTGGGCGCTAGAGACACAGGTCTGGAGAATGGGGAGGATTACTCTGACACCCAGTCACAGCACGGCGGGCGCTGCCCCCCTACCAAACCCAAACGACACCCCAGCACCCGCCTCAGCTCCTCAGACCCCAGAGCACCTCACGTCCTCCCGGACACCCCTCCACCGCCCCTACCCACTCACTCGCAGGCCAAACACTCAGAGAAGAAGAATGCAATGAAGAAGTCAGACTCGGGGGACATGTCCAAGAAGGTGCCGCCTCTGAAGCCCAAACGAAGTCCCAGCACTCAGCTCTCGTTCGACCCCCCACCGGCCCGCGTGCCCCCTCCTGCCACGCCCCTGCCTTTCCAGGGGGGTGAGGGTAAGCCCCAGGGTGAGGAGGGGGATGATGAGCCTGTCTACATAGAGATGGTGGGCCAGGTGTTCACAAGGGAGAGCCAGACTGCCACCCCTCACCCTGTCACTCCTGTCGCCACCACACCCGACTCAGACTCAGACCAAAACGAGGCCATCTATGAGGAGATGAAGTACCCGTTgccagaggacagagagggacacaAACGCATCCCTCTCAAACACGAGAGACTCAAATCCTCCAAACACCACTCCTCTGGCATCTCTGCCCCTCTACCtcgcccctcctcctccccctcctgttcCAAACCTAAAGCCACAGTGTCCATTTCCCACTCCTcgcccctcccctcctccacatCCACCACCCCTGTCCCCCAGCCACTCTCCTCTAGCCCGCAACCCCCACGGGCCCCTACTCCCTATCTCCTCCAGGGGAACAAATCAGAGACAGAGTCCACCAGTAAGATCCCGGCCCCCTTCCCCAACCTGCTGCAGCACCGGCCTCCGCTGCTCGCCTTCCCCCAGCCTGCTGCTGCCTCCAGCGGGGTCGGGGTCCAACACAAAGCTGTTGCTGCCAAACTGGGAACCATCAGCATCCAGACCTCCTCCAGTATGACAACGCCATCCAGCACCTCCTCTGCCTCTACCACCCcctcctccaatctccccatgCTCCTGTCAGGCTGTAAGGAGTCTAAGGAAAGAGACAAGCAGAgcagagacaaagacaaagacagagacagagacagagacagccagcTCGACCCTGCACCGGGTCTAAGGGCCAGGAGCCACTCCACACCGCTGCCCCCTTCCTCCAAGTCCACCTCCCCTTActcccaccagcaccaccacccccaccaccgcccctcacactaccaccactaccgcAAGCCAGATAGAGGAGACTCGCCCAaccccaacaccaacaacaaGAATGGCTCAGAAACCTCCTCCAAGTCCACtgcccagacccagacccagggctctggcAAGGAGGGCAAGTCTGTGAGCTTCTACTTGAAGTCAGACAaaggagacagggacagggacagagagagggacagagagagggaaagagacggtCACAGGGAcaatcacagagacagagacagggacagtgacagagagagacacagggagagagacagagagcgagaccgtgacagagacagagaaacagggtcccactctacctcctctcaGGCTGAGAGCACTCCCACCACCAACAGCCATTCATCCCAGACCAGCACCAGTTCAAACCCAAACcagtcctcctccacctcctctcactCTCGCCCTCACTCTCGTTCCCACCTCCAACGCTCCCACACCCCTCATGGCCTGCCTGCCTACAAGCCCCCCTCCTCAGACAGCCCCCTGCTCTGGACCTACCCCTCAGTGGGCTTCCGGAGACCCCCGGCGTACGACAGCCTGCGAGGAGGGTCTCATCTGCCCTCCTTGCACCACCAGGGTCACGGTGATGTGGCCTCCAAAAGCAGCACGGTGCCTGGGCCCGTCCAGGGGAAGGCTGGGTTCATGCCCTGGGACAGCAGTGGCTTTGGAGACGACGGGTCCTACTGGCCCTTGCAGAGGAAACTCTCCTTCAGCCATGGCAGCcgagagacagcaagagaaaAGGACGAAGGACGTGCATGGAATGGTAGTGCCGATGCCCTCCTGAGGGTGGACAAGGAGGAACTGGTCCCAGGGCatcgaggaagaggaggaggaggaggccacTCTGGGATCCCAGTACGCTTCACTGGAGGGAGGGGGTTGGGCCACAGTGAGTCCCTGGCCGGGATGGAGGAGGGGTTCTTAGGGTTCCGAGCCCTGCCTAGAGGgggtctccctctcccctgccaAACCTTCCCAGCCTATCGCAATGGAGAACTGGGTCGATTCGGCCGCTCATCATCCACCTCTGGGGCGAGGCAGGTGGGTGGATGCGACGTTCAGAGGCAGAGCAGCCTGCCTCATCGAGAGGCACTGAGTCAGTTGCATGGGCTGTCTCACTCCTCCCAGACACCCTGCAGTCCCAGTCTGTctcgacagcagcagcagctccaACTCCATCAGCAGCAGCTGCAGTTACAGCAACAGCTCCAGCAGCTGCAGCAGCAGCACCACCTCCAGCTGCAGTTCCAGCACCTGGCTCAGCTAGCCCAGGGACAGCCTCCCAACACCGGGGGCGCCGCCGCATCCGCAGCCCAGACCCAGAGGGATGGTAAGCTGCTGGAGGTCATCGAGAGGAAGCGCTGCCTATGCAAAGAGATCAAGGCCCAGCGGCGCCCAGACAAGAGCCTGTGTAAGCAGGACAGCATGCCTATCCTGCCCAGCTGGAGACGGACCCCTGAACCCCGTAAGACAGGCACACCTCCCTGCCAGAGGCCCCAGGCTGTGGTGTGGGACACTGCCATCTGAGGGGGGCGGGTGGGGCAGGAGAGGTACAGTAGAAAGATAGGGGCAAGTACTATGTACTAAATAAGAACTATTGGGCACAATTGTTGTGAGACACAAGAAGTTTACAagtggagagagatggtggaaATCACTTTCTACAAAAGGTGGAGGATTGTTTTCTCTCTTAGGAGTGACAGTGTGATTACCGCTGAccacagaagagagagaatatGCATGAGAATAAGATGAGAGTTTTGTGCTCTCACATGGTAAGACACACTTCATGTGGAGCTGATACAAGGTCGTCAAGGTTACTGAGATGTTTAGAGGTGTGTGGGCCAGAAAAATAATGAACAACTGAAATATAAACGTGATTTAAAGTATGACTTTGTAGAGATGGAAAAAGATGGGGAAGATTCAGTTGAGGGATATACCAATACAACATGAAACCAAGAAGAGACATACAATCAGTCAGTACTGTGTGATATTTTACACTTTAAATGTGATTTCTTACCCTTTAAATGTAGTATTCTAAAAGCCTTTCCTTGACTCTTTATTCGTTTATTAAACTCTAGTCGACTCAACTTCGCTGATATAAAATAAAAGGGGAGTATTTATACTATAAGAGGGAGTATTTATACTCTAAGGGGGCGTATTTATACCCCAAGAGGGAGTATTTATACTCTAAGAGGAAGTATTTATACTATAAGAGCAACACTGGTTCAATTCATTTGGCCTAATTTTCCCTaaattaaagtaactgtccagtgtttccagattacTATGAAATATTACCTATAACTACTTACattatgagtgaaatagttttccttccaacaTTTTAtaattaagtatgttaaaaatgagcttttctgtgttggaatggcgTGGGCGTACcagaacaacagaatggtgtgggtgtaccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004214 lncRNA downstream 16791 35227183 ~ 35233864 (-) True G882540
TU1004027 lncRNA downstream 39615 35208192 ~ 35211040 (-) True G882385
TU1004187 lncRNA downstream 68053 35182322 ~ 35182602 (-) True G882517
TU1004184 lncRNA downstream 70802 35179637 ~ 35179853 (-) True G882514
TU1004183 lncRNA downstream 71118 35179312 ~ 35179537 (-) True G882513
TU1004247 lncRNA upstream 4927 35297382 ~ 35297615 (-) True G882573
TU1004253 lncRNA upstream 12347 35304802 ~ 35305063 (-) True G882579
TU1004254 lncRNA upstream 12800 35305255 ~ 35305986 (-) True G882580
TU1004209 lncRNA upstream 26156 35318611 ~ 35320695 (-) True G882535
TU1004277 lncRNA upstream 75060 35367515 ~ 35370773 (-) False defbl1
XM_021618212.2 mRNA downstream 4795 35211817 ~ 35245860 (-) True LOC110533731
XM_036989347.1 mRNA downstream 78513 35163598 ~ 35172142 (-) True LOC110534897
XM_036989346.1 mRNA downstream 90602 35159544 ~ 35160053 (-) True LOC118966630
XM_036990125.1 mRNA downstream 91316 35123145 ~ 35159339 (-) True LOC110533729
XM_036990123.1 mRNA downstream 91317 35123145 ~ 35159338 (-) False LOC110533729
XM_021618215.2 mRNA upstream 38277 35330732 ~ 35341314 (-) False LOC110533734
XM_021618216.2 mRNA upstream 38277 35330732 ~ 35341314 (-) True LOC110533734
XM_021618218.2 mRNA upstream 52138 35344593 ~ 35357587 (-) False LOC110533735
XM_021618217.2 mRNA upstream 52138 35344593 ~ 35357905 (-) True LOC110533735
NM_001124434.1 mRNA upstream 77659 35370114 ~ 35370730 (-) False defbl1
TU1003687 other downstream 356727 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 651980 34598367 ~ 34598675 (-) True LOC110534894
TU1003400 other downstream 654473 34592322 ~ 34596182 (-) True LOC110533714
TU1003325 other downstream 833394 34413063 ~ 34417261 (-) True G881778
TU1002672 other downstream 1277343 33939435 ~ 33973312 (-) True LOC110533687
TU1004252 other upstream 10459 35302914 ~ 35304055 (-) True G882578
TU1004213 other upstream 28359 35320814 ~ 35321706 (-) True G882539
TU1004310 other upstream 134794 35427249 ~ 35428208 (-) True G882631
TU1004715 other upstream 305862 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 588069 35880524 ~ 35880951 (-) True G883128

Expression Profile