RNA id: TU1003911


Basic Information

Item Value
RNA id TU1003911
length 2704
lncRNA type sense_over
GC content 0.47
exon number 2
gene id mogat3b
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35307753 ~ 35321801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacacacagctgtaaatttcaatgaaacatggtgaagccccaaaattgccctcactagaagcctgtgtttcagacataaggaagtggatggctgcaaacattctacttttaaactcggacaaaacagagatgcttgttctaggtcccaagaaataaagatcttctgttgaatctgacaatgtTAATGGtcgtacagtcatctcaaataaaactgtgaaggacctcggcgttactctggacattgatctctcttttgatgaacatatcaagactgtttcaaggacagcttttttccttCTACgtaaacattgcaaaaatcaaactttctgtcaaaatgatgcggaaaaattaatccatgcttttgttacttctagattagattactgcaatgctctactttccggctacccagataaagcactaaataaacttcagttagtgctaaatacagctgctagaatcctgactagaaccaaataaatggatcatattactccagtgctagcctccctacattggcttcctgtcaaggcaagggctgatttcaaggttttactgataacctgcaaagcattacatgggcttgctcctacctatctctcagatttggtcctgccgtacatacctacacgtacgttatggtcacaagacgcaggcctcctaattgtccctataatttctaagcaaacagctggaggcagggcattctcctatagagctccattgttatggaatggtctgcctacccatgtgagagacgcaaactctgtctcaacctttaagtctttactgaagactcatctcttcagtgggtcatatgattgagtgtagtctggcccaggagtgtgaaggtgaatggaaaggctctggagcaatgaaacgcccttgctgtctctacctggccggttcccctctttccactgggattctctgcctctaaccctattacaggggctgagtcactggcttactggtgctctttcatgccgtccctaggaggggtgcgtcacttgagtgggttgagtcactgatgtgatcttcctgtctgtgttggcaccccccccccggggttgtgccgtggtggagatctttgtgggatatcctcggccttgtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgccttggcaaagtgggtggggttatatccttcctgtttggctctgtccgggggtatcatcggatggggccacagtgtctccttgaccctcctgtctcagcctccagtatttatgctgcagtagtttatgtcgggggctagggtcagtttgttatatcgggagtacttttcctgtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctttctctctcggaggacctgagccctaggactatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctcctccagtttcaactgttctgcctgcggctatggaatcctgacctgttcaccggacgtgctacctgtcccagacctattatttgactatgctggtcatttatgaacatttgaacatcttggccatgttctgttatctccacccggcacagccagaataggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagttttcctagccaacgtgcttcaacacctggattgcttgctgtttggggtgttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttgatttatggatGGACCAGTAGTGAGAGGCCACAAATGCACAAGAAAGAAGTGTTGTAGTTATAAAAAAATACAACCATACATCACATAGCTACATCATTGATCCACTGAACTGACTGGCTAACTGCTTTTGGCTGTGTTTTAAGAATGACTTTTTTGTACATTTATTAGATAACAACCCAGTGGGTCAGTTCTCATCTCTCTCGTTGTTCCTCAGGGCTGACCTGGTGCCTGTCTACTCGTATGGGGAGAACAATATCTTCCGCCAGGTGATCTTCACAGAGGACAGTGTGGGCTGGAGGTTGCAGCAACTCTTTAAGAAGCTCATGGGCTTTGCCCCCTGTCTGTTCGTGGGTGAATGCTGGTTCTGGATGCCTTACCACTGCCCTGTTACCACTGTCGTGGGTAGTCCTATCCCAGTGCCAAAGCGGCCTTCCCCCACTCAGGAGGAAGTGGATCACTACCATGGCCTCTACATGGAGGCCCTGTCCAAGCTCTTCCATGGACACAAGGCCAGCTGTGGACTCTCAGACAGCCACGAGCTGCGCATCATATAGGCCAATCATTTAGACTGCTCCCACAAGGACTATGTGAATGACGAGATTTGTCATGGTGTCTTTCTGTCAGATACTGTAGCCAACCTCCACAGTGAGACTACTTAAATGAACATATTCCAACTCAGGATCCAGCGATGTCCCAATCATTGATCCCTGGATCCACTAAGCTGCCTGGCTAATAACTTTGGACTGTATTTACTGTAAGGGAACAGTGCATGTGCTTTAATGTACCAATAATTTAACCACTTTGGTAAGGGTTTTTTCAGTTGTTCAGGTACACCAAAAAAAAATTATTGAGGCAAGCCGAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1003966 lncRNA upstream 19845 35294595 ~ 35295398 (+) True G882336
TU1003965 lncRNA upstream 22932 35291681 ~ 35292311 (+) True G882335
TU1003921 lncRNA upstream 50910 35235320 ~ 35264333 (+) True G882300
TU1003925 lncRNA upstream 81053 35228866 ~ 35234190 (+) False G882301
TU1003926 lncRNA upstream 82742 35228866 ~ 35232501 (+) True G882301
TU1003975 lncRNA downstream 9800 35328094 ~ 35328644 (+) True G882344
TU1003979 lncRNA downstream 12457 35330751 ~ 35331709 (+) True G882348
TU1003986 lncRNA downstream 23821 35342115 ~ 35342686 (+) True G882352
TU1003987 lncRNA downstream 24681 35342975 ~ 35343227 (+) True G882353
TU1004294 lncRNA downstream 88333 35406627 ~ 35406870 (+) True G882615
XM_021618211.2 mRNA upstream 111461 35197951 ~ 35203782 (+) True gltpd2
XM_021618196.2 mRNA upstream 251779 35050938 ~ 35063464 (+) True LOC110533726
XM_021618190.2 mRNA upstream 340157 34971817 ~ 34975086 (+) True LOC110533722
XM_021618187.2 mRNA upstream 365967 34945726 ~ 34949276 (+) False LOC110533719
XM_036990114.1 mRNA upstream 573792 34735544 ~ 34741451 (+) True LOC110533717
XR_005053626.1 mRNA downstream 39747 35358041 ~ 35362540 (+) True LOC118966749
XM_021619817.2 mRNA downstream 66176 35384470 ~ 35385650 (+) True LOC110534898
XM_021619820.2 mRNA downstream 90842 35409136 ~ 35410259 (+) True LOC110534900
XM_021618226.2 mRNA downstream 177906 35496200 ~ 35500355 (+) True nlrc3l1
XM_021618227.2 mRNA downstream 198991 35517285 ~ 35521595 (+) False zgc:110224
TU1003922 other upstream 80018 35225097 ~ 35235225 (+) False G882300
TU1003871 other upstream 151737 35161348 ~ 35163506 (+) True G882265
TU1003830 other upstream 205852 35107462 ~ 35109391 (+) True G882225
TU1003805 other upstream 239276 35075598 ~ 35075967 (+) True G882202
TU1003587 other upstream 503714 34808602 ~ 34811529 (+) True G882013
TU1003912 other downstream 206 35318500 ~ 35321801 (+) False mogat3b
TU1003914 other downstream 206 35318500 ~ 35321801 (+) True mogat3b
TU1004303 other downstream 96681 35414975 ~ 35416238 (+) True G882624
TU1004434 other downstream 364361 35682655 ~ 35686573 (+) True LOC110533748
TU1005301 other downstream 975020 36293314 ~ 36295547 (+) False G883473

Expression Profile