RNA id: XM_021618215.2


Basic Information

Item Value
RNA id XM_021618215.2
length 3131
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110533734
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35330732 ~ 35341314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACTAAATACGCAATTTGAACGTGTAATCCAACTTCCGggaaatgtgtttcctgtctaaCGGCGTCGCCATTAAGAGACCACGCAGCATTGCTAAAATAACTTGTTTTATTAACAGACCTACATTTTTAGGGTGATGGCGGACAGTGATGATGAATATGATCGCAGAAGGAGAGACAAGTTCCGTCGTGAGAGGAGCGACAACTATGACCGCtcccgagagagagaggaaaggcgTAGGGATGACTGGAATGACAGGCGCCCATCTGCAAGGGAGTGGGACAGGGGCAGGGAGCGGCGTAGCCGGGGGGAGTATCGGGACTACGAGAGAGGTCGCAGGGAGAGGTTCTCCCCACCCAGGCACGACATGAGTCCCCAACAGAAACGCATGAGGAGAGATTGGGATGACCATGGAGGAGATCCCTACCATGGTGGGTATGACTTGGGCTACGGTGGTGGCGGAGGCCCCAGCTACGCCCCTCCACAGCCTTGGGGCCACCCTGACCTTCATCTCATGCAGCCTCACCATGGCATACCCATCCAGgcaagGCTAGGAAACATCCATGATATGGATCTGGGCCTGCCACCTCCGGTGATGAAGAGCTTTAAGGAGTTCCTTCTGTCCCTGGATGACTCTGTGGATGAGACCGAGGCAGTCAAACGTTATAATGAGTACAAGATAGACTTCCGACGGCAGCAGATGCAGGACTTCTTCCTTGCGCACAAAGATGAAGAGTGGTTCAGATCCAAATACCACCCGGATGAGGCGGGCCGGCGGAAGGCTGAGGCCCACAGTGGCTTGCAGAACCGGCTGAATGTCTACATATTCCTGATGGAGAACGGCTGGTTCGACACCGTCTCCCTGGACATGGAGAAGGCCCAGGCCATCATGAAGGTCTTGGATGCAGCGGtgataaagatggagggagggacagatCATGACCTGCGTATATTGGAGCTGCcgtctgaggaggaagaggagagggagagagctgacAGGGCGGCAGCTGTTGGTCCTGGAACTGAACCCCCCAAAAAAGAGGAGCCCAAGGATAAGAATCAGGACAATGACCGCAAACCCCCAGCTGACAAAGAGAATGGGGAGAGTGATGCCTGCAGCACGGAGAAGGGGGCAAACGGTGGTGGTGAAGCAGCAGcagaagggagtgagggagaagagaaaggagaaaaaGAGGTGAAAAGCAAACAAGTTGTGCCTGAGCCTAAGAAGCTGAGTAAGAAGAGGAAGCGGAAGCACAGTGgagacagtgaagatgaggccagTGCTTCTGAGAGTGACTCCGATTCCGACTCCAACTCCCATCATTCCTCTGATAAAAATGCAGAGAAGGAGGATGAGGGTGAggaaaaggaggaaggggaggacaagGACgatgaggaaaaggaggagggggaggacaaggatgaagaggaagaagagggtgaAGCTGACGGTAAGAAAAGCAAAGAGGAGAAACCAAAggaaagggcgagagagagggagaaacaagaGGAGAAGAAACCCAAGGAGGACCAGCCCCTGAGACCCAGGCCTCTCCACAGGACCTGCTCTTTATTCATGAGGAGCATCGCCCCCACAATCTCCAAGGCTGAGATCATAGCTTTATGTCGGAGATATCCTGGGTTTATGCGAGTGTGCTTGTCTGATCCCCAACCGGAGCGCAGGTTCTTCCGTCGCTGCTGGGTGACGTTTGACCGTAGTGTCAACATCAAGGAGACCTGCTGGAACCTCCAGAACATCAGACTGCGTGACTGTGAGCTGGCCCCGGGGGTGAACAGAGACCTAGCCCGGAGGGTCCGCAACATCAATGGCATCACTCAGCACAAACAGGTGCTGCGCAATGACATCAAACTGTCAGCCAAACTCATCCACTCTCTGGACGACAGAGGCAGGCTGTGGAGCCAAAAGGCCCGGGGAGATAATGTGTCTGCTGTGGAGATGGCGGCTCAGAACCCCATCCTGAAGAACATCACTGACTACTTGATAGAGGAGGTGAGCGCTGAGGAGGAGGAGCTACTGGGCAGTGTGGGCGGAGCTGATGCAGAGGAGGGCAGCAAGGAGGGGAACCCAGCCGAGATCACTGTGGAGAGGGATGACACGCTGGTCAAGGTGTTGGACCGTCTTCTCTTGTACCTGCGTATTGTCCATTCCAttgactactacaacaactgcgaGTACCCCAGCGAGGATGAGATGCCCAACCGCTGTGGCATGATCCATGTGCGTGGGCCCATCCCTCCCAACCGCATCACACACGGGGAAGTGTTGGAGTGGCAGAAGACGTTTGAGGAGAGGCTAAGCCCCCTATTCAGTGTGAAGGAGAAGCTATCAGAAGAGGAGGCAGGCAAGATGGGCCGAAAGGACCCAGAGCATGAGGTGGAGAAGTTTGTGTCGGCAAACACCCAGGAGCTGGGCAAGGACAAGTGGCTCTGCCCCCTCAGTGGCAAGAAGTTCAAGGGCCCAGAGTTTGTGCGCAAGCACATTCTGAACAAACACGGGGACAAAATTGATGAGGTGAAAAAGGAGGTGGTGTTTTTCAACAATTTCCTCATGGATGCCAAGCGACCTTCCCTCCCGGAGATGAAGCCACCTCCTCCGCCTGGCCCAGGACAGGgaGTTCTTTCTCCAGGCATGCCCTTCCCTCCCCAGGGCCTCATGGGCTTCGGTCCCGGCCAGCCTCGTCCTCCTGTCATGGGTTACGGAGGTGGACCTCCTTACCCACCAAACCAGTATGGGGGCGGTCGGGGTAACTATGACAACTTCCGTGGACAGGGTGGTGGCTACCCTGGTAAACCCCGCAACAACAGAATGTCTCGGGGAGATCCACGCAACATCATTGAATACCGTGACCTGGATGCACCTGATGACATGGACTTCTTCTAGACTCCATTTATTTTAATCTCTTTTGTTTCTAATCATTGTAATTTCCCCTTCTTATCCCCTTATGTTAAGTGATGAATTAGCCTCgtattttttttgttcagtgtctgCAGCGCAAAGTCTCAGTACAATTGTAACCAACTTGAATTAAAAGAATGTATAACCtcaataaaaaacatttgatgaCAAtggcattttttaaaatatatatcagcaaaaaaagaaacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004209 lncRNA downstream 10037 35318611 ~ 35320695 (-) True G882535
TU1004254 lncRNA downstream 24746 35305255 ~ 35305986 (-) True G882580
TU1004253 lncRNA downstream 25669 35304802 ~ 35305063 (-) True G882579
TU1004247 lncRNA downstream 33117 35297382 ~ 35297615 (-) True G882573
TU1004026 lncRNA downstream 53594 35208192 ~ 35277138 (-) False G882385
TU1004277 lncRNA upstream 26201 35367515 ~ 35370773 (-) False defbl1
TU1004278 lncRNA upstream 27189 35368503 ~ 35370773 (-) True defbl1
TU1004284 lncRNA upstream 40109 35381423 ~ 35406422 (-) True G882605
TU1004302 lncRNA upstream 72929 35414243 ~ 35414548 (-) True G882623
TU1004307 lncRNA upstream 82283 35423597 ~ 35423825 (-) True G882628
XM_036990128.1 mRNA downstream 38277 35250655 ~ 35292455 (-) True LOC110533732
XM_021618212.2 mRNA downstream 84872 35211817 ~ 35245860 (-) True LOC110533731
XM_036989347.1 mRNA downstream 158590 35163598 ~ 35172142 (-) True LOC110534897
XM_036989346.1 mRNA downstream 170679 35159544 ~ 35160053 (-) True LOC118966630
XM_036990125.1 mRNA downstream 171393 35123145 ~ 35159339 (-) True LOC110533729
XM_021618218.2 mRNA upstream 3279 35344593 ~ 35357587 (-) False LOC110533735
XM_021618217.2 mRNA upstream 3279 35344593 ~ 35357905 (-) True LOC110533735
NM_001124434.1 mRNA upstream 28800 35370114 ~ 35370730 (-) False defbl1
XM_021618219.2 mRNA upstream 90310 35431624 ~ 35483763 (-) False LOC110533736
XM_021618220.2 mRNA upstream 90310 35431624 ~ 35483763 (-) False LOC110533736
TU1004213 other downstream 9026 35320814 ~ 35321706 (-) True G882539
TU1004252 other downstream 26677 35302914 ~ 35304055 (-) True G882578
TU1003687 other downstream 436804 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 732057 34598367 ~ 34598675 (-) True LOC110534894
TU1003400 other downstream 734550 34592322 ~ 34596182 (-) True LOC110533714
TU1004310 other upstream 85935 35427249 ~ 35428208 (-) True G882631
TU1004715 other upstream 257003 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 539210 35880524 ~ 35880951 (-) True G883128
TU1005623 other upstream 1048683 36389997 ~ 36390914 (-) True G883753
TU1005624 other upstream 1049789 36391103 ~ 36392527 (-) True G883754

Expression Profile