RNA id: TU1004277


Basic Information

Item Value
RNA id TU1004277
length 1364
lncRNA type sense_over
GC content 0.41
exon number 4
gene id defbl1
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35367515 ~ 35370773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTCCGTGTCAAAGTCATTGGAGTAGCAACATCATCTTCTTCAGCCACCAGAATGTCTTGTCAACGTATGGTCACTTTGGTGCTCCTGGTTTTCCTATTGCTTAATGTTGTGGAGGATGAGGCTGCATCATTTCCCTTCTCTTGCCCCACCCTGAGTGGAGTCTGCCGAAAACTTTGCCTGCCAACAGAGATGTTCTTTGGACCACTGGGCTGTGGAAAGGGATTCTTgTGCTGTGTTTCTCATTTCTAAAGACAACTGAATAATTACTAGATTGTTTCTGATCAATCACACATGAAGACATCACATCCGCATGTATGGTCTTTCTTCTTATGTCCCTCCACTTGACCTTGGATTCTGTGGACTTCCTTCCATGACTTAACTGTGTGTCTGACTACCTTCGTATTTATTTGTTGCAGTTTTCTGTTTGTAACACCCCCCAAGAAATAACATATCCTACTTTGTATCTAATAGTATCACCGCCATCCTCACGGCTTAGATGATGGTGGTGGCGGAGTGGGatgataaatacactgggaaacAATGTAATAAATGCATGTATTAGTGATACAGCTCTCCTGTGAGGAGTGGATGGTTAAAAAAGCTGTTCTGTTATATTGTGGTGCTATAATGGTATTCACCACTCTTGTTTGGAAGAGCTTATAAAGCATAGAGGGGCAATCTGTGATTGCTAcatccattgtttttgtcaaaatgcACAAGCTCAGTACatttggttgggaatcattgatggacagccatATTCAAACTTTGCTTTTATTAATAAAGAAACATGTCTATAATGTAGGTTGTGTAAATACTGTAAGTAGGAAACAAATCCAATTGAATCCCTTTTTAGATTgaattttaaggcagcaaaatgtgaaaacTGTGCAAGGGCTATGTAGATATCCGCTAGGCATTGTTAATATCCACTCACTCttgaatataacttataaatgcctcatgagcttagttcaactgtcttaccccatcagaaccccaaatataagcttgttttaccaCATTGTTTGCAGGCTTCTGGAGATtgtcctgttagggtgaaggAAGCAAAGGTGGCAAGAATAAGGGCTGTCCAGCATGTCTCCTATCCGGAGGAAATGACAAGAGTGAAAGAAGGGAGTGACGTTGAAGAGGCATAGGTAGCAGGGTTAGAGCAGGGGTCTCCAAActtttctagcatgagagctactTTAAACAAATGTACATGTCACAAGCTACTCATTGTTTTCTAGCTCCTCTGCCCTGCAACTCTTCCCCTGGTCCTTGGTGTACAagaggaagtagtgcactatgttttcTGTTAATATACCTGGTCaaataatggttaataaacaACTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004209 lncRNA downstream 46820 35318611 ~ 35320695 (-) True G882535
TU1004254 lncRNA downstream 61529 35305255 ~ 35305986 (-) True G882580
TU1004253 lncRNA downstream 62452 35304802 ~ 35305063 (-) True G882579
TU1004247 lncRNA downstream 69900 35297382 ~ 35297615 (-) True G882573
TU1004214 lncRNA downstream 133651 35227183 ~ 35233864 (-) True G882540
TU1004284 lncRNA upstream 10650 35381423 ~ 35406422 (-) True G882605
TU1004302 lncRNA upstream 43470 35414243 ~ 35414548 (-) True G882623
TU1004307 lncRNA upstream 52824 35423597 ~ 35423825 (-) True G882628
TU1004311 lncRNA upstream 57640 35428413 ~ 35428710 (-) True G882632
TU1004594 lncRNA upstream 58961 35429734 ~ 35429934 (-) True G882875
XM_021618217.2 mRNA downstream 9610 35344593 ~ 35357905 (-) True LOC110533735
XM_021618218.2 mRNA downstream 9928 35344593 ~ 35357587 (-) False LOC110533735
XM_021618215.2 mRNA downstream 26201 35330732 ~ 35341314 (-) False LOC110533734
XM_021618216.2 mRNA downstream 26201 35330732 ~ 35341314 (-) True LOC110533734
XM_036990128.1 mRNA downstream 75060 35250655 ~ 35292455 (-) True LOC110533732
XM_021618219.2 mRNA upstream 60851 35431624 ~ 35483763 (-) False LOC110533736
XM_021618220.2 mRNA upstream 60851 35431624 ~ 35483763 (-) False LOC110533736
XM_021618221.2 mRNA upstream 60851 35431624 ~ 35483763 (-) False LOC110533736
XM_021618222.2 mRNA upstream 60851 35431624 ~ 35483763 (-) False LOC110533736
XM_021618223.2 mRNA upstream 60851 35431624 ~ 35483763 (-) False LOC110533736
TU1004213 other downstream 45809 35320814 ~ 35321706 (-) True G882539
TU1004252 other downstream 63460 35302914 ~ 35304055 (-) True G882578
TU1003687 other downstream 473587 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 768840 34598367 ~ 34598675 (-) True LOC110534894
TU1003400 other downstream 771333 34592322 ~ 34596182 (-) True LOC110533714
TU1004310 other upstream 56476 35427249 ~ 35428208 (-) True G882631
TU1004715 other upstream 227544 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 509751 35880524 ~ 35880951 (-) True G883128
TU1005623 other upstream 1019224 36389997 ~ 36390914 (-) True G883753
TU1005624 other upstream 1020330 36391103 ~ 36392527 (-) True G883754

Expression Profile