RNA id: XM_036990152.1


Basic Information

Item Value
RNA id XM_036990152.1
length 2964
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110533740
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35506178 ~ 35517246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATGGCCCTCCGGTTTTCCAACCCGGAAATGGCATGCGCTAGGAATTTACAACACTCCCCAAGATGGCTGGGGTGTTTGAGGTGGAGGTTGATGGTGTAGAACACGATCATGGACACCACGATGAACCAAATCAGGTCGACCTATCCCATCTGTCACCGGAGGAGAAGTGGAGGTTGGAGCATGCCAGGATGCATGTGAAACACAAGGGCCATGAGGCCATGCACGCTGAGATGGTGCTTATCCTCATTGTCACCCTGGTCATCGCCCAGCTGGTCCTTGTGCAATGGAAACAGAGGCACCCCAAGTCCTACAATCTGGTGACTCTGTTCCAGATGTGGGTGGTTCCTCTGTACTtcaccaccaagcttcactgGTGGAGGTTTCTGGTCACGTGGTTCATCTTCTCTGTGGTCACTGCATACGTTACCTACCGGGCCACACGCAAGCACCTGGAGTGTACCACGCCTAGGCTGGTCTACAAAtggttcctcctcctctacaagATCAGCTATGCCACAGGGATAGTGGGCTACACTGTCGTCATGTTTACACTGTTTGGCATCAACTTGATATTTAGAATAAAGCCAGAGGACGCAATGGATTTTGGTGTGTCCTTACTGTTCTATGGTCTGTACTATGGCGTCCTGGGTAGGGACTTTGCTGAAATGTGTGCAGACGTCATGGCATCGACAGTGGGGTTCTACAGCGCGTCTGGAATGCCCACCAAGCACCTCTCAGATAGTATCTGCGCTGTGTGTGGCCAGCCCATACTGGTTGATGTCAGCGACGAGGGAATCATCGAGAACACATACAGACTATCCTGCAGCCATGTATTCCATGAATTCTGCATACGAGGATGGTGCATCGTGGGAAAGAAGCAGATATGCCCGTACTGCAAAGAGAAGGTGGACCTGAAAAGGATGTTCAGTAACCCCTGGGAGAGGCCACATGTCATGTATGGACAACTCCTGGACTGGCTCCGCTACCTTGTCGCTTGGCAACCAGTAATCATTGGACTTGTGCAAGGCATCAACTACATCCTGGGGCTGGAGTGACCTGGGAGAGTGGGGAAGGACACACAAGCCATATGGAGATGGTAGATAATGCACTGGCCTGACTAGGAGGCCTCACCATGGACTTATAAGAACATCTATTATAAACTGTGTCTGTACATGTACTATTTGTATATATGTATAGGCACGTAGTatctgtattttagatgttttagAATTTGACTAGTACCCTGGGTTTGGATATCCTTTTATTGTATTTTTGTTTAGTCAATCAAAACGTTTTAAACAAATGCAGTGTACATTTCATTGCTTAGTAAAATGGTCCTCAGTTTTTTGGAGATGCTTTTCAAAAGTAATTTGTCTTAACTTTTGCTTTCTATGGTAATGAGTGGCTGACACGGCCCAGATACGTGAGGGGAGCGTTGTAGAATGCCAGTCTTCGTTTTGTGTGTTAAATCTGTACCTTTTGTTAGTGGAGGTCCTGGTTGAATGTGGCTGCTGGGGTGAGGGTTTCTAGTCTCTCAGGAGCACTGGGCTCAAGACAGTGTGTCCTATCCTACTACAGACTTCATCTCTTTAAGAGGGGAACTACAATATGTCCCCCTCACGCCTCCCTCAGACGGCTGCTCGTGTCTGTGTTCAGCCCAGATGACTCTCAAGGAATAGGTACCGTAAAAGAATATGCAAAAAGGTGAATATAATTTGATCATTTTGGTTGTCTATTTACTTTTTTGGCATGTTTTTGTTCTTTTGATTGTCTGTTATTAAATGTGACACAGTCAAGATCAGGTGTAGACATTACTTAATTCAGACCAGATCCACTAGTATAGACCCTTCATGACCTGGGGGATTTTGTGTATCATTTCCAGAATATTATACTTCCTGTTCCGTTAAGATGCAGTATAGTTCTCGTCATATGAAGAAACATACCAGACTGATGCCAGTCAGGCCACCCTGGACTAGGATTGAGTGTGGCCATTGAAATATGACGTTCTTCTTTTAGACTGCTCTTGTGAAGAATACAGTAATCGGACAGAAGCAAGTATGCCGTTGACGATTCTTCTCCTAGGTAAGAGATCCTCtaacattctcacacacacgttCACTGATGTATGTGGATGTTTCTGCTGCATATGTATTTAcatttctgtgtgtatgtgcctgtgttACGCAATGGCTGAGGGTGTGCTCCATCTCTTCTACAGCCTTCATGGGGTTTTTTGGGGTCCTGCGCTCAGAGGccactgcagATTCCACAGAGGTGCCGTCTCCCAGAATCCTCCAACCCCATAGGTCCAAAATAAGAGCTGTTCCAGGAGAGCCGTTGATTATTGAATGTAAAGCAGACCCAGGCCTTCCTGATGACTTTACCCATGTCTACTGGCTGGTCAACAGAACCTTCCCAGAGGTAGCCTTCACTGATGGCAGAGTATCAGAAACAGAGGAATCAGCATCAGAGGACGGCAGGGTGATCCAGAGGAGTCTGGTGTTAAAGAATGTGACTGCAGAGGATTTTAAGTCCACTTTCACCTGTGTAATAAGTAGCCTAGCTGGGCTTGACCGAAGGACTGTCACACTGATGCCAAATCACAAGGCTAGTTTTCCCTCACTACCTCACGTCCTCTCCCTTCGTCCTTCACTCACTCCCAACTCAAAACACCAGGGGAAACCGAGAAAGGAATttaagaagaaacctagaaaaAAGGatcaggggaaaaaaacaaaaccaCGCTAGCAAGAAATTAGGTTAGATGGATTGTCTTAGTCCAGTACTTAACCCTTGTGTGGGTTAATGATACaatgtaaatatttttttcaacctGTTCTTGGCACATTTTCTATGAACAACATGTAAAATAACACTTTCATTGAGTGCACACTgcacatttatattacatatgtggtgttcgaTTCACTGGACCCGAGGGTAATAAAagtgcctgtctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004594 lncRNA downstream 76930 35429734 ~ 35429934 (-) True G882875
TU1004311 lncRNA downstream 78154 35428413 ~ 35428710 (-) True G882632
TU1004307 lncRNA downstream 83039 35423597 ~ 35423825 (-) True G882628
TU1004302 lncRNA downstream 92316 35414243 ~ 35414548 (-) True G882623
TU1004284 lncRNA downstream 100442 35381423 ~ 35406422 (-) True G882605
TU1004693 lncRNA upstream 42252 35559498 ~ 35562576 (-) False G882951
TU1004695 lncRNA upstream 44219 35561465 ~ 35562576 (-) True G882951
TU1004781 lncRNA upstream 173272 35690518 ~ 35743100 (-) True G883030
TU1004880 lncRNA upstream 354269 35871515 ~ 35871734 (-) True G883112
TU1004883 lncRNA upstream 355219 35872465 ~ 35872720 (-) True G883115
XM_021618221.2 mRNA downstream 23101 35431624 ~ 35483763 (-) False LOC110533736
XM_021618232.2 mRNA upstream 10785 35528031 ~ 35536120 (-) True LOC110533741
LOC118937084 mRNA upstream 11528 35528774 ~ 35528891 (-) True LOC118937084
XR_005034473.1 mRNA upstream 16080 35533326 ~ 35533404 (-) True LOC118937077
XM_021618234.2 mRNA upstream 62529 35579775 ~ 35584629 (-) True LOC110533743
XM_021618235.2 mRNA upstream 90964 35608210 ~ 35613400 (-) True LOC110533744
TU1004310 other downstream 78656 35427249 ~ 35428208 (-) True G882631
TU1004213 other downstream 185158 35320814 ~ 35321706 (-) True G882539
TU1004252 other downstream 202809 35302914 ~ 35304055 (-) True G882578
TU1003687 other downstream 612936 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 908189 34598367 ~ 34598675 (-) True LOC110534894
TU1004715 other upstream 81071 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 363278 35880524 ~ 35880951 (-) True G883128
TU1005623 other upstream 872751 36389997 ~ 36390914 (-) True G883753
TU1005624 other upstream 873857 36391103 ~ 36392527 (-) True G883754
TU1006338 other upstream 1142272 36659518 ~ 36665357 (-) True scn4bb

Expression Profile