RNA id: LOC118937084



Basic Information


Item Value
RNA id LOC118937084
length 118
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC118937084
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35528774 ~ 35528891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTGCCCCTTGAAGCATTGTAGTCTGACTGAAAGTGTCGAGCATGTGTCATGAGGGGCGGAGAGTGACAGGTCTACGCCGAGGACCCAGAACAATGGGAACTTGGCGTGATTGGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1004594 lncRNA downstream 98840 35429734 ~ 35429934 (-) True G882875
TU1004311 lncRNA downstream 100064 35428413 ~ 35428710 (-) True G882632
TU1004307 lncRNA downstream 104949 35423597 ~ 35423825 (-) True G882628
TU1004302 lncRNA downstream 114226 35414243 ~ 35414548 (-) True G882623
TU1004284 lncRNA downstream 122352 35381423 ~ 35406422 (-) True G882605
TU1004693 lncRNA upstream 30607 35559498 ~ 35562576 (-) False G882951
TU1004695 lncRNA upstream 32574 35561465 ~ 35562576 (-) True G882951
TU1004781 lncRNA upstream 161627 35690518 ~ 35743100 (-) True G883030
TU1004880 lncRNA upstream 342624 35871515 ~ 35871734 (-) True G883112
TU1004883 lncRNA upstream 343574 35872465 ~ 35872720 (-) True G883115
XM_036990147.1 mRNA downstream 11528 35506864 ~ 35517246 (-) False LOC110533740
XR_005034473.1 mRNA upstream 4435 35533326 ~ 35533404 (-) True LOC118937077
XM_021618234.2 mRNA upstream 50884 35579775 ~ 35584629 (-) True LOC110533743
XM_021618235.2 mRNA upstream 79319 35608210 ~ 35613400 (-) True LOC110533744
XM_021618254.2 mRNA upstream 175957 35704848 ~ 35716516 (-) True LOC110533752
XM_021618242.2 mRNA upstream 187864 35716755 ~ 35776627 (-) False LOC110533749
TU1004310 other downstream 100566 35427249 ~ 35428208 (-) True G882631
TU1004213 other downstream 207068 35320814 ~ 35321706 (-) True G882539
TU1004252 other downstream 224719 35302914 ~ 35304055 (-) True G882578
TU1003687 other downstream 634846 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 930099 34598367 ~ 34598675 (-) True LOC110534894
TU1004715 other upstream 69426 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 351633 35880524 ~ 35880951 (-) True G883128
TU1005623 other upstream 861106 36389997 ~ 36390914 (-) True G883753
TU1005624 other upstream 862212 36391103 ~ 36392527 (-) True G883754
TU1006338 other upstream 1130627 36659518 ~ 36665357 (-) True scn4bb

Expression Profile