RNA id: XM_021618235.2


Basic Information

Item Value
RNA id XM_021618235.2
length 3257
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110533744
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35608210 ~ 35613400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCCTGTAGGTTTATACTAACATAGATGTATTTATAATGACGAGATACTCGTTTCCGCCCTAACAATGAGTCGTTGTCCCAAAAGCGGGAAGGCAGGCGACATGGTCCAAAATAAGCATATAGAAACGCTAAGGGAAACGCTTCTATTGAACAGATTTAGGCGAGAGTGAACCCTCTCgtttcgcctcttcctctctttgcTGCGGCCACCCAATGGCCACGACCCAGAATCAGAGAAGACAAAAATGCCCAACAAGACATTTAGCTATATGAATAGCAAAACCGCAGAGAGCCTAAACTGCTCAACTATTTAGCGTTTTCTTAATTCTATGGAAACGTATTTTGAGAGCGGAATTGCTACGGAAATCAAAATGCCTTGTCAAAATCAGCAGCTGAACAACAATGACAGACAAGAACACGCGGCAATGAGCAGCACCAAGCAGGTTCGGTTTGCTAGCTGCGGAAACAGCGTTCTGACAGAGTCCAATAGAGATGCAGAAGTAGCCGAAACTTGTGAAAATGTATTCAACAGTGAACTACAGAGGCAGATCGGATCGCAATTAAAACTGCTTCCTTTGAATGACCAAATACGAGAATTACAGACCATCATTAGAGACAAGTCTACTAGCAGGGGAGATTTTGTATTTTGTGCTGATAGATTGATCAGACTAGTGGTTGAAGAGGGACTCAATCAGCTGCCATACAGCGAGTGTACAGTGACCACTCCTACAGGGCATAAATATGATGGTGTCAAGTTTGAAAAAGGCAACTGCGGTGTCAGCATTATGAGAAGTGGCGAGGCCATGGAGCAGGGCCTCAGAGACTGCTGCCGGTCCATCCGTATCGGTAAGATCCTAATCCAGAGTGACGAGGACACCCAGAAGGCCAAAGTCTACTATGCAAAGTTCCCCCCAGACATCAGCAGGAGGAAAGTCCTCCTCATGTACCCCATTCTCAGTACAGGTAACACAGTGATTGAGGCTGTGAGAGTTCTGACTGAACATGGTCTTCAGCCCAAACATATTATCCTCCTGagtctcttctccacccctcaCGGTGCCAAATCCATCATTCAAGAGTTCCCAGAAATCACCATATTGACCACCGAGGTGCACCCTGTGGCTCCCACACACTTTGGCCAGAGGTACTTTGGGACAGACTAGTCAGCCCTCTAGGGCCATTCAATGGGACACCATACTATGAGAACCAACCATTGAATGGTCCCTCTGTCCGTTTGTCCACTTATTTCAAAAGGAGTTGTTATCCTGCTGAAGATTCTTGCTTTGCTGTGTATGCCGCCTTAACCTGTGCTCCTCAGTCTGACAAACAATGCAAAGATTTTCCTGGAAACAACAAAAAAGCACATTCCATGTAGGTCTTTTAGGAACTAGTCTAGCGAGCTTGCATGTACTGCTGCCATTTTATTTATTCAGTAATGGTAGTTCATTCTAGGTTGTTTTTCCTAATTTGAAAGTCTAaataatttaaatatatattttctcaatatattctattcaAAGTATGTGAGCGGAGTTGAGCAGACGTAAATCCTGCTCGTCGCTTATGGAGCGGTGCTCCACGTCCTTTCCAACCACTCCGCTAAAAACCTCTCCGCACTCACAGGGGGAAAAATGCCGCTCCAAATTCTCTCCAGTCATTAAAATCACCATCTATTTTTTTACTACCTGGTCCTAGcatttggttttgaagtattgaaaccaaaccatatgatttgaatgaaaagtattataataaacatgaaaaggtgaatgtaagaagcgctcatcatttcaaataggctacatgtcatattaaacaacATATAAACACTCAACAGGTCAGGAGCCTAAGAAGGAACAAAAACATGTTATTTAGGCTATATTTCagttatttcaaggctatagcctacaaagaaatgCATTGTGCAGCATTTGCGAGTGCAACACAATAGGCTGATAGGGACAAAGcgctcagcatttaaacaacGTTTAGTTGCATTCAATCATTAGTCTATAAATTGTGCTTTTAGGCTGTGACTTAGAATTAAATGAAAACATTATTAGGCTCAGTCTACAGTGCCTTTGAATTTATTTTTAGAAACATCAGTTTGTGGCTTCATGCTCATGTGATGATGCGTGGAGAGCAGGCCAGCAGCTGAGAATATCCTCTCTGAacttgcagagccactggggatgctaaacacccttttggccACTCTGGGTAGTGATGCAGAGTTGTATATTTATTTTTCTATTGGTAGGCCTAAAGGTTTTTAGGCAAAGTAACCCAATCAAAACAGAACGCTCCTTGAATGTTGGAATATGCCAGGCTTATTGGGCcaaaatcaattatggcctagtgtgtgtgtgtgtatagagctAGATATATGTAACATAACTTTtagtttataaatactttgctacaatgacacacttagtTCCTTTCTTTTAGCATGTGCACTTAATAAGTACACCATCGTGCTTTCAGGATATGTTTTCAGTttccacaatgattctttagttgtggacactacatcaccacaatccctctcttgctcttggtcatcatctttgtaagtcaccttgattttgcacctgtgtgttctatcagtttctttatgaaaatatttagtgagctatagcagcacacaagtaaaCTACAAATGCATGCTACGCCAGCCATGTCCTTGAAGTGAGCGCTACTTGAGCGAAATTGGAGCGGGCGAGAAGGCCGACGTtccagcctttgggaatctcGCTCCGCGCTCCAGTCAAAAGGGCATGCTCTGCTCACATACTCTGATTCTATTgtcgtcttttttttttttttttttttttgtcattattaTTGCCACAAACAGATTTAATGTATCATAACACCGAAAAGAAACAAACCAATCAAGAGAAACTCTGGCCAGATCTGAAGTGCAATTTGATGGAATATGCAATTTGGACATTTCAGAGTGGAAAAGGCTGGGAAAAAAAGCTCAGAAATACATTGCCCTTATGACATCTATGTGTAGTTAAGGAATCATCAATCCTCCAtcgttaacacaatggaaaggtcaaatgctttatctaaatgttgaaagtgcGTGGGCGAAAGAAACAAAACGGTGCAGTTTGAGGCCGTGATATGGGGGTGTAAAGTCGAggtttctgtgtgtctgtatgctgtTTGTACGTTTTATATCATTcaagaaaaaaataaagaatacACAGAAAACCCATATACAAAAATAAATGGTTAACTACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004693 lncRNA downstream 45634 35559498 ~ 35562576 (-) False G882951
TU1004695 lncRNA downstream 45634 35561465 ~ 35562576 (-) True G882951
TU1004594 lncRNA downstream 178276 35429734 ~ 35429934 (-) True G882875
TU1004311 lncRNA downstream 179500 35428413 ~ 35428710 (-) True G882632
TU1004307 lncRNA downstream 184385 35423597 ~ 35423825 (-) True G882628
TU1004781 lncRNA upstream 77118 35690518 ~ 35743100 (-) True G883030
TU1004880 lncRNA upstream 258115 35871515 ~ 35871734 (-) True G883112
TU1004883 lncRNA upstream 259065 35872465 ~ 35872720 (-) True G883115
TU1005257 lncRNA upstream 559628 36173028 ~ 36173449 (-) True G883434
TU1005263 lncRNA upstream 568576 36181976 ~ 36183040 (-) True G883440
XM_021618234.2 mRNA downstream 23581 35579775 ~ 35584629 (-) True LOC110533743
XM_021618232.2 mRNA downstream 72090 35528031 ~ 35536120 (-) True LOC110533741
XR_005034473.1 mRNA downstream 74806 35533326 ~ 35533404 (-) True LOC118937077
LOC118937084 mRNA downstream 79319 35528774 ~ 35528891 (-) True LOC118937084
XM_036990148.1 mRNA downstream 90964 35506864 ~ 35517246 (-) False LOC110533740
XM_021618254.2 mRNA upstream 91448 35704848 ~ 35716516 (-) True LOC110533752
XM_021618242.2 mRNA upstream 103355 35716755 ~ 35776627 (-) False LOC110533749
XM_021618243.2 mRNA upstream 103355 35716755 ~ 35776627 (-) False LOC110533749
XM_021618244.2 mRNA upstream 103355 35716755 ~ 35776627 (-) False LOC110533749
XM_021618245.2 mRNA upstream 103355 35716755 ~ 35776627 (-) False LOC110533749
TU1004715 other downstream 9125 35598317 ~ 35599085 (-) True G882971
TU1004310 other downstream 180002 35427249 ~ 35428208 (-) True G882631
TU1004213 other downstream 286504 35320814 ~ 35321706 (-) True G882539
TU1004252 other downstream 304155 35302914 ~ 35304055 (-) True G882578
TU1003687 other downstream 714282 34892979 ~ 34893928 (-) True LOC110533718
TU1004896 other upstream 267124 35880524 ~ 35880951 (-) True G883128
TU1005623 other upstream 776597 36389997 ~ 36390914 (-) True G883753
TU1005624 other upstream 777703 36391103 ~ 36392527 (-) True G883754
TU1006338 other upstream 1046118 36659518 ~ 36665357 (-) True scn4bb
TU1006746 other upstream 1703517 37316917 ~ 37318864 (-) True G884736

Expression Profile