RNA id: XM_036990162.1


Basic Information

Item Value
RNA id XM_036990162.1
length 2711
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110533748
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35674201 ~ 35686573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAGCTGGTTGCGATCCGACAATACACATTTTAATAAGAAGAAAGAATCCGAAAAAGACATGAGACAACGACCCAACTCATTCTCGTTTGGCAGCTGAAACTAAACCACAGCGGAAAAGAGTCACCGTCGCAAGTTCTAGGCTCCTGTTGATATTCAGCGGTACCTCTCATCCGGACCTTGGCCAAAAAATTTCCGACCGCCTGGGACTTGAGCTGGGGAAGGTTGTGACCAAAAAGTTCAGCAACCAGGAGACATGCGTGGAGATCGGGGAGAGTGTCAGAGGAGAGGATGTCTACATTGTCCAGAGTGGTTGCGacaagacaagaaggaCAAGGTGGGGAGTCGGGCTCCCATCTCTGCAAAGCTGGTAGCCAACATGTTGTCAGTGTCAGGAGCCGATCACATAATCACCATGGACCTGCATGCCTCGCAGATACAGGGGTTCTTTGATATCCCTGTGGACAATCTATACGCGGAGCCAGCTGTGCTGAAATGGATCAAAGAGAACATCAATGAGTGGAAGAATTGCACCATTGTGTCTCCTGATGCTGGAGGAGCCAAAAGGGTCACCTCTATAGCAGACAGGCTGAATGTGGACTTCGCCCTAATCCACAAAGAGCGGAAGAAGGCTAACGAGGTGGACCGCATGGTCCTGGTGGGGGACGTGAAGGACCGAGTGGCCATCTTGGTTGATGACATGGCAGACACATGCGGCACCATCTGCCACGCTGCAGATAAGCTAGTGTCTGCTGGAGCCACAAAGGTCTATGCCATCTTGACCCATGGGATCTTTTCAGGCCCTGCTATCACCCGCATCAACAACGCCTGTTTTGAGGCTGTGGTTGTCACAAATACCATCCCTCAGGAGGATAAGATGAAACACTGTTCAAAAATACAGGTTATTGACATCTCCATGATTCTAGCCGAGGCTATTCGCCGGACACACAACGGCGAGTCAGTGTCGTATCTCTTCAGCCATGTTCCCTTGTAACATCCCTTGAACAACCCCACCCTGCTTTCACCGGAAACCTGTACCAAAGGACGGATGTCTGGAGCACCACCATCATCTCAACCCATCCATTTATTCCccatggaaggaaggaaggacataCTGTGGGGTCAATTTAAAAAATAGCTCCTTGCCAATATTCTGTTACAGTGCACTGGCTATCAACTGGTTTGACCTTTTGACTTACCAAATGAAGATTTTAGTTAATTGGTGTATTAATATGCCAGGCTGTTTCATATTGGCATTGTCTGCCATGTTTCATAGGCATTGTGTATTACAAGATTGAAAAGCTCTAGTTTACATTGCTGCTGAAAGCCATTTTGAGAGAAATGTTCACGCCAATATGGCATTATGTTTAAGGAGCTTGTTATTTTGTTACTGATCTGTTTTCCGCTACAGGGCGGTCTATCTACTTGCATTTCCTAGATAATGTTCTAATTTTGAGATGCTTGTACTGATAGAACTCTGCGTTTACACAGTTCAACAACAAAGCATTGTGTACTGTTTACATCCACGCTTTAGTTAGACTTTAGTTGTTTTCATGCCTTTGTATTTCAAGCTATATTCTAGGACGTGTTTGCAGTTCCAATTCCAAGTGTCCTTAGTTCTATGCCTTGGTGTGTTGATACCATGATTTTAAAATTTAGTTGCATGATTTTTATGTAGTTGTAATCAAAGCATGACTTGCAGTgcacacatacaggtaactgccaaaataaaggaaacaccagcaTACActgtaaagtgtcttaatagggcgttgggccgccacgagaacagcttcaatgtgccttggcatagattctacaagtctCTGGAACTATATTGGAGGAATGCGAcgccattcttccacgagaaagtccatcatttggtgttttcttgatggtggtggaaaacactcaggcactgctccagaatctcccataagtgttgaATTGGGTTGAgaccctttaaaccccctatgctcatTTGAgaccctttaaaccccctatgctcctttgagacctctctttcaaagtcactgagatctcttttagacatggtagccaaaataatgggaaaCGGGGCATTTTTATActtgaccctaagcatgatgggatgttttaATTGCGTAATTAACTCAGAAACCCCATCTGTGTGGTTGCAACTGCTTTCAACATACTTTGAATCCCTCATTCACTCAAGTATTTCCTTTTATTTTGGTACCTAATGAATGAATGTGATTCAATATCATGCACATCTGCCATGTTTTATTCATCAAGCAATAAGGCATGTAGTGCATGGAGCCTAATGTAACTGTCACATTATTTGAGCTTTACGAATCCAAGTGGTTTTGCGTAGCGGTATTGGAAATGTAAATTATATTCATTTCCACGCTAAAACTCGGGAATCCTAAGGGCACTCGCCACTTGGGGTAGCATGCACCCTTTCAAAACTTCAGTCTTCTATTTCGAAAACAATGGCTTGTGTAGCTCAAAGCCTGCCCATGTGTAAGGCCTGCTTACATATTTTTCTTTCGAGTATTAAGTATTGTCAGTCCGTCCTATAACTCTCAAACACGGCTGTAGCTGCTTCAATTCTCGGTAAATGCAATCCACACCAAGCCCATTATACCCCAGAATCGAATCTGATTTTACTGTTTAAGCCAATGTGTGTAAATGTGTCTGATTTTAGCTGAGATTATAGTTATTTAAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004475 lncRNA upstream 1784 35671897 ~ 35672417 (+) True G882775
TU1004389 lncRNA upstream 24732 35537466 ~ 35649469 (+) True G882702
TU1004384 lncRNA upstream 141454 35529966 ~ 35532747 (+) True G882700
TU1004305 lncRNA upstream 253754 35420231 ~ 35420447 (+) True G882626
TU1004296 lncRNA upstream 265128 35408795 ~ 35409073 (+) True G882617
TU1004489 lncRNA downstream 50482 35736797 ~ 35737299 (+) True G882789
TU1004533 lncRNA downstream 131753 35818068 ~ 35869469 (+) False G882828
TU1004534 lncRNA downstream 131786 35818101 ~ 35821887 (+) True G882828
TU1004879 lncRNA downstream 184632 35870947 ~ 35871210 (+) True LOC110534918
TU1004952 lncRNA downstream 216505 35902820 ~ 35903134 (+) True G883158
XM_036990133.1 mRNA upstream 12742 35627608 ~ 35661459 (+) True LOC110533745
NM_001124256.1 mRNA upstream 74244 35557807 ~ 35599957 (+) True rb1
XM_021618233.2 mRNA upstream 116944 35548853 ~ 35557257 (+) True slc6a7
XM_036990144.1 mRNA upstream 118226 35548839 ~ 35555975 (+) False slc6a7
XM_021618227.2 mRNA upstream 152606 35517285 ~ 35521595 (+) False zgc:110224
XM_021618251.2 mRNA downstream 10851 35697166 ~ 35704073 (+) False LOC110533751
XM_021618252.2 mRNA downstream 10851 35697166 ~ 35704073 (+) False LOC110533751
XM_021618253.2 mRNA downstream 10851 35697166 ~ 35704073 (+) False LOC110533751
XM_036990143.1 mRNA downstream 10851 35697166 ~ 35704073 (+) False LOC110533751
XM_021618248.2 mRNA downstream 10854 35697169 ~ 35704073 (+) False LOC110533751
TU1004303 other upstream 257963 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 352400 35318500 ~ 35321801 (+) False mogat3b
TU1003914 other upstream 352400 35318500 ~ 35321801 (+) True mogat3b
TU1003908 other upstream 354205 35316451 ~ 35319996 (+) False mogat3b
TU1003922 other upstream 438976 35225097 ~ 35235225 (+) False G882300
TU1005301 other downstream 606999 36293314 ~ 36295547 (+) False G883473
TU1005835 other downstream 1113070 36799385 ~ 36801585 (+) True LOC110533788
TU1005877 other downstream 1163331 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 3069194 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 6026012 41712327 ~ 41717292 (+) False G889906

Expression Profile