RNA id: TU1004920


Basic Information

Item Value
RNA id TU1004920
length 6446
lncRNA type sense_over
GC content 0.39
exon number 3
gene id LOC110533760
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35887135 ~ 35989671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcaacatctcaagacatcagtcaggaagcttgatgcttggtcgcaaatgggtcttctaaatgaacaatgaccccaagcatacttccaaagttgtggccaaatggcttaagaacaacaaagccaaggtatttgagtggccatcacaaagccctgacctcaatcccatagaacatttgtgggcagaactgaaaatgcatgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacccaaaacgtttgacccaagttaaacaatttaaaggcattgctaccaaatactaattgattgtgtgtaaacttctgacccactgagaatgtgatgaaagaaataaaagctgaaataaatccttctctctactattattctgatatttcacattcttaaaatagagtggtgatcctaactggcctaagacagggaatttttactaggattaaatgtcaggaattgtgataaactgagtttaaatgtatttggataaggtgtatgtaactTTCCGACTTCAATCGTATACTCAAGGAAATTCCATACAGCAGGTTAAGAACTGGAACTAGTAACTATTTGTGATAAATATATTTGGATGTATGAGAATCAGGCGGTGTAAAGACATAATTTACACCTCCATGGGTAAATCATGTTTCTTCTGTGTCATATTTTCTCAGTTGTGCATCTTTTGTCCTCATGTTTTGTTTGAATGTTATTTGATATTTTGCATGAACTGTTCATactgtgtattttatttttatagttTTGTCTTTGTGTATGTTTTGGGAGTGTTCTGTCTGCATTGTTTTCCAGTTCTTGTTTTGTCATCTCAACATATCATAAACCACACATATGATAAGCACTCCTGAGTCATACCTGGTGGTAACAGTGACATAGTCCATAGACCTCCCCCACCACAGACACTGATATTATACTCTCAAAAAAGAACTGAACATTGCTTTTTTTACTTTGCTCCTCCTTGTTGTTGGACTGGATCAAGACTGGATGGGCCCCAGCATGTCTACCTAGCAGCCAGCAGAAATCACAGGCACAAGGTGATAGCCATCTGAGAGGCATGCTCAGTACAGCACGCACATCAGCATGTGTCATTATTGTGTCAGCCActactggacagacagacagaccctctgTGACACGTTAGCTAGGATAGTACAGTCCTCTAGCTCGCTGTTAGCCAGTCAGCTCTCAGTCAGTTGACCTCTCACTTGCTGTCATTCCTGTTGTGGGTCACTTCCTGTGCCTGCATGCCCTCATAGGACGCCCCCCCCCGCCCGCCCTGGATACGTGTCATGCAAGAGGGAACTAAATCATCGCCTGTTTTCATCTTTGGCTCCATGACTACATCATACATTAATAACACTATGTTATAGCACTGTTATAACACTGTTATTCCCTGTTTCTGTCGTTGCTATACTCTACAAAACGAGTTCCAGACCAAATAGCCATGCCATTGCCAGGGAATCTTCCTGCTTAGGGACTTGGTAGGGAAACAGAAGTCAGCACACCCAGTTTGTCCTGATGTTACGCCCATAGTGTAGCTGCTATTCTCCATTCTGATGCCAGTACTGGAACCTTGACAGATGTGACTTGCATGTCCATAGCAACAGCTCAGTACGAACAGGAGACAGTACTTATTGTCCAAAGCTGCTGTAACTAACCTCATCCTTATTAACATAGTTATTTTCTGAGACTAGTTGCAAACCATAAATGTTGCCAAAGTATTTTTTGTCTGAATTGCTGTGAAAATAAGCCATATAGCCAGATAAGATCAAATAACCTCACATTCTCTACACTCCTCTTTTATGTAAGTATTCAATATTATGCATTAAGCAGACAACAGTGGTGAATACAATATATTTAATGAAGTTAAATTACAAACCCAGATCATTTTTCAGAAAGAAAATATACACAGAAATCTAGCAGTCATGTAGAATACATTATGTCTTACAAACATAACGCCCTACTTGAGGACTCATTAGAAACTGTTTGGCTTTTTTATTTCTCAGTCAAATCTACCTGTAGATCTCATTGATCTCATTGCAGGTAGAAGTTGAACAACTAGCTATATAACACTAACCATGCAGCCACAGAGCTACATAGAATCAATATATTGGCACCTATTTTGGTATCTACCGCTCTCTTGTAGCTCTCAACGTCACGTGTGATTGATTTTATCTGCACAGTATAGGCCTACGTAAGCCTATTCTGAGCAGGATGCATATGCAGTGGGGGCTGTATTTTGTGAGGGATTGGCTGTCCTCAGTTAGAATAAAATCAGACTGCTGGTTTTTGTTTGTCTGTTAGTCAGGAAAGGGTTCCTGTTAGATCCACCTTGCTAAACCCTTGGTCAAAAAGCGACATGTGCCCATAACAATTGCACCTCTTATTTTATGTATGTATAGAGCTATATTACAGCAGCTACTCATTCTGCTCGATCCAATCTTTTCTACTCTTTTGAACAGTGTGTGCCGATTACTCAAAGCGATACAGGTAGGGTCCGGCACGGTAGGGGTTAGTCCTGGTGTATGAAAGGTGACCGTTAGttttgcctgctctctgtgttgtcttggcCAGGACCCTGCTCTATCGCTTTGTAAAGTATGAAGTAGTTTAAAGCTtgaataacataaaataacataataTAATGTTATTTATGTTATTTCCCACGTGAAGAACTCCTGTAAACCTTGCCGTATTGAAACTCAGTGAACAAGGCATCTTAGACAAGCTGAAAAACAAATGGTGGTACGATAAGGGTGAATGTGGAACCAAGGACTCTGGAAGTAAGGTCAGTCGCTGCAGGTCTTTTTACACGGCATTTTGACCTAACTGTTCATATGCAAATACGTAAACACCATACATTTTCAAAACCACATATTTTTTCTtccatttttttaaaatttttgttTTCCTTTTCATAGAATGCAAGTGAAAACAGTCTAAAGAATATCCATCCCACAGTTTGCCTTACACATACTTCATTATCCACAATACCGTCGACATTATTGGTGTTTACATTACTATtataatgatgataatgattaTTCCTAAGATCTCATCACATAGtttagacatacagtatgtattggTAGTTGAAAAGGTGCAGCATGCCTTGGATAAATGTAAGATTCCATGTGTATTCATACTTACCATAGACAAATGACAACCGTTGAATTGTAACCATTATGCTGCAGTTTTGTTAACCAAACTTTTATTGAAACATTGTTTATTAGTGTCCTTACTTATTTGCGTGCTAATTGAATATATTGAATCTATTAACATTATGCAGTTTGACTTCAAGCTTCCTTACTCTGACAAACTACAAACTAACTTTCAAACTCCAGATGGTCATCCAGTGGTCAGATGGAATCTGAAGGTCATGTTTGAACTGTGGAATGTCACAATAAGGAGATTTTGTTTGCACACTTCATGAAGTTTAAGGATCTAATATAAACCAGTTATTTAACCCTCTGAGACAGTCATCGGACAGGACGTACTGGCCCTGTAGCCAACATCAGGGCTCCCCTATGATAGTCTACAAAACACACTTTAAAGGACACACTAATAGGGTTAAAATGCAAATGGTAAAACTCTTATAAATGAATTTCAATATCTAAGTTTGGATGTTAGTAGCAGAAAAATGGTTCAATTCACAATTCCTATAGCTTGCCACTTTGATTGAAATTGTGAGATACAGTCAGATAATGGTACGTTTGAAAAACTACAGTATCAAAGTGAAGTCAGGGCCTATCAACAGTTTTTCGACCTGTACGATATTGACCACCTTCCTTTAGGGTGGCCTCGTTAATGAGCTACAGAGTAGGGTATAAGGAACCTTTTTCTCAACATTCACCAATCCAGCTATGTTATAAACTACCTGCAGAGTTGAACCACCTCTCCTGCTATTGTTGATGATTGACTGACCTACCAGACAGTCCCAAGTTGCTCCCAGCTTTCCACTGTTGTAGGGAAGTCATTCAGCAGGTCAGCCTCTGCCGTTTATCTCAGTACTACCCCACAGTAGGCATGTCTCCATGGGATTCACTGCCTACACAGTTGATAGAGCCAGACAGAGTTGTTAGGGTAATCCATTAGATCactaggctgtgtttacacaggcagccccaTTCTTATATTTTTTTCCAATCACACCAGAGATTTTCACGTCAGCTCTTTTTCAGCTCTGATCTGATTGTTCGAAAGGCCAATTAGTGAAACgatcagaattgggctacctGTGTAAACACAGACTAATAGCGGGGGTGCCGTTTACATTAGAGCTGGATTTGAGTCAGAAGCCTCTTTGGGAGATTTTGCCTGTCTTGTTAGATCAGGTCACAACCAAAATGTCTGTAAAAAATTCTTAACATTGTTCTTTACCTTCCCCAGGACAAGACAAGTGCTCTAAGCCTGAGCAATGTGGCGGGAGTCTTCTATATTCTGGTTGGAGGGCTAGGGCTGGCTATGACCGTGGCTTTGATAGAGTTCTGTTATAAGTCACGGGCAGAAACCAAAAGACTGAAACTGGCTAAGAATGCCCAAAACTTTAAACCAGCTCCTCCGGCGAACACCCAGAATTTTGCCACGTACCGAGAAGGCTATAATGTGTATGGAACAGAGAGTGTTAAAATCTAGGGGATCTGAAGTCTGTCCCTTCCGCTGGTGTCTCTGCAGGAAGGTACAGTCACTCTGGAGGAATACAACTCGCAATGGCTGGCACCCTGGAGGCGACAGACATGGTCATCAGCTTAGACCCAAACCCACAGTCAACAAAGGCCCATCTTGGGATGCCAAACCTGGCACGATAATCAACGACAGTGACACAATAGGACTTGTTTCTTGAAATATGGGACCTGCCTCTCTTAGTGCCTTACGGAGCATTCAGCGTCACAACAATGCAACTCCATTTTGGTTCACTTGAAAATACAGAATCAAAAAATAATATAGGggaggaaagaaagaaaacatTGATAGTGTTGTAATCTATATACGTGGGTTAGTTTTTGTTTCATTATTTTGACGAAAAAAAAATGCCATTACTTGCCATTAAGAAACTTATCCCAGAGAACATTTTAAGTCATTTCAATCCTTTACAGGAATATTTTAGTGGTAAAACATTgaccattttttgtttgttttatttaacgTACTAGTCAACTGCCTATTTTACTATACAGTTATGTTCAATGTCATATAATAATCTAAGATATACTTCAATCAATAGGATAGGATCAATAGAAAATGACAATATTGTACCCTCGTtctgtatttaaaaaatgtgcatAATTTGAAACCATTGATTATTCAAAATGTCTTAGGTGCTGTCAATTTTCTCAGAGCCTGATGGGCAAACGGACATTTTATCATGGCAGCAGCATAACATGACTGGTTAAAACAAATGCaatatttaacttgggtcacacTTGTCACTACTGCCAAAAATGTTCAATTGAAAACAGATTTTATGAAGATGTGATCAGTTTTAAAACACATATGGTGTCTTATTGTAATAGTTTTTTTTTGATTGAACAGAGAACAAACGGTTGTAGAGAACACTTGGATATTTACAGTATAGGACTACCAAGCATAATAGGTGTTTGGTTATAAACAGTACACCCCTTTTGACAATTTATAAAAGGTTTAAGTACTCCTAATCACAAATCTGCTACATTTCTTACACATTAAAATGGAAAAAGCTTTATAAATGTAAGTCTTATTGCAATGCAATCCAATGATATCTTTAAAGATGGAGCTCTCTATTATATGAACATGCTGGGTATAAATAACAGCACACTGTATCTGGTTGGGATTTACATGACTTTCTTTGTACCCGTTTGTTTTCTGTTGAGATTATGTAGTGAATGATGAGCaatgagagtggagagagagagagagagatcagaagaATACAACGAGTATTTCTGTTTGAATGTTTCTGCCAAAACTGTGATCCACTACACTTTGAAGACAAACCCAAGACAAAACTGATGAATATGAGAATTCTTTATGAACCACGGAGGACCATAAATGTGAAGAAACGTACATTTGTTTAGTTTGATTTTATTAAATGAAGGCTTCTCATCATTTTTACCCAAGTAAAACGCATGTGGAAGAGGTGATCACTTGACCAAACTGCAACCTAAAGCAGACCCTAGGAAGTTAGCAATCTCAACTTTAGAGCTCATTGGATCCTTTCGGTTATTTTATTTGTAACTGCATCTCAGCAATGAGAAAACTGCCAAGCTGCATAGTGATAACAAGAACTGCATGTCTGGACATACTGAACCTTGTTAGTGAGGTTCTGTACAAAGAATTTTGTTACATTTTTGTCAATAAAAACAGATTTAAAAATTGGTTATTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004952 lncRNA upstream 79750 35902820 ~ 35903134 (+) True G883158
TU1004879 lncRNA upstream 111674 35870947 ~ 35871210 (+) True LOC110534918
TU1004533 lncRNA upstream 113415 35818068 ~ 35869469 (+) False G882828
TU1004534 lncRNA upstream 160997 35818101 ~ 35821887 (+) True G882828
TU1004489 lncRNA upstream 245585 35736797 ~ 35737299 (+) True G882789
TU1004997 lncRNA downstream 898 35990569 ~ 35993332 (+) True G883202
TU1005039 lncRNA downstream 94100 36083771 ~ 36086700 (+) False G883242
TU1005040 lncRNA downstream 94100 36083771 ~ 36086700 (+) True G883242
TU1005078 lncRNA downstream 152000 36141671 ~ 36159072 (+) False LOC110533099
TU1005089 lncRNA downstream 170034 36159705 ~ 36159908 (+) True G883277
XM_021619834.2 mRNA upstream 110674 35865115 ~ 35872210 (+) False LOC110534918
XM_021619836.2 mRNA upstream 110674 35865115 ~ 35872210 (+) False LOC110534918
XR_005053641.1 mRNA upstream 110674 35865115 ~ 35872210 (+) False LOC110534918
XM_021618249.2 mRNA upstream 278811 35697169 ~ 35704073 (+) False LOC110533751
XM_036990170.1 mRNA downstream 136409 36126080 ~ 36138679 (+) True LOC110533766
XM_036990171.1 mRNA downstream 151998 36141669 ~ 36183062 (+) False LOC110533099
XM_021618274.2 mRNA downstream 193564 36183235 ~ 36194217 (+) False LOC110533767
XM_036990172.1 mRNA downstream 193564 36183235 ~ 36194217 (+) False LOC110533767
XM_021618275.2 mRNA downstream 193586 36183257 ~ 36194217 (+) True LOC110533767
TU1004434 other upstream 296311 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 566646 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 661083 35318500 ~ 35321801 (+) False mogat3b
TU1003914 other upstream 661083 35318500 ~ 35321801 (+) True mogat3b
TU1003908 other upstream 662888 35316451 ~ 35319996 (+) False mogat3b
TU1005301 other downstream 303643 36293314 ~ 36295547 (+) False G883473
TU1005835 other downstream 809714 36799385 ~ 36801585 (+) True LOC110533788
TU1005877 other downstream 859975 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 2765838 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 5722656 41712327 ~ 41717292 (+) False G889906

Expression Profile