RNA id: XM_021618279.2


Basic Information

Item Value
RNA id XM_021618279.2
length 1725
RNA type mRNA
GC content 0.46
exon number 10
gene id fam76b
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36194574 ~ 36202847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctttctttcttctgtCGTTGGCCGCATCCGGTTTGAATGACGACGCTGCGGATACAAAAAAAGAGAAAGGGAAAATAGGAATAGCTAGCTAAGAACAGCGAAAAAACTATTTACATTTGACTCTTGTTTATACATTTTGCGGATGCTAGATCAGTATTTTTGACTACCTATGTCAAGTAACTTATGTTAGCTAGCCAACGGAGAGAGATGATAGATATTTAGCTGTTTATTTAGCATTAGTTTAGCTATTATTGGCTAGCTACAGGCTTAGTTAGCTAACGTTGTCAAACAATTTCCTTGGTAGCTAACACATTGTCTGGGTGACTAGCTATTTCACTCTATTTGTTTTTATCTTTGACTTTTTCTTGATCTTGGTGATAATGGCAACATCGGCCCTGTACGCGTGTACGAAGTGTAACCAGCGGTATCCTTTCGAAGAACTGTCGCAGGGACAGCAACTGTGCAAGGAGTGTCGCATCGCTCATCCCATCGTCAAGTGTACATACTGCAGATCAGAGTTTCAGCAGGAGAGCAAAACAAACACAATTTGCAAGAAATGTGCCCAGAATGTAAAGCAGTTTGGGACGCCTAAACCCTGCCAGTATTGTAACATCATTGCTGCTTTCATTGGAACAAAGTGTCAGCGTTGCACTAACTCAGAGAAGAAGTATGGCCCTCCACAGACCTGTGAGCAGTGCAAACAACAGTGTGCATTTGACCGCAAGGAAGAGGGTAGGAGGAAGgtggATGGGAAGCTGCTGTGCTGGCTATGCACTCTGTCCTACCGCCGTGTGCTGCAGAAGACCAAGGAGCAAAGGAAAGGCTTCAGCTCCTCCCACTCCAACTCCTCGCTCAATGAGAAGGACCACCACTccaggcagcagcagcatcatcaacaccaccagcagcacagacacagCAGCTCACATAAACTCAGTGGGAGCCTAAGTCCAGAGCTGGAGCAGGGACTGTGGAAGCAGAGCCATAAATCGTCTTCGATCCAGAAGGAGACCCCAAAGAAGAAGCCAAAACTGGATGTGAAGCCATCCAACGGGGACAGGTACGAGAGGAGTTTCAATCACATTAGTTCCATTACCCAATCTATGGATTCTGGAGGAACGGACAACTTTATTCTGATCAGCCAGCTGAAAGAGGAAGTGATGTCATTAAAGAGAATGCTTCAACAGAGGGATCAGACAATACTGGAGAAGGACCGAAAGCTCACAGAACTCAAGGCAGACTTCCAGTACCAGGAATCTAACATGAGGGTTAAGATGAACAACATGGAGAAGGTGCACAAAGAGGCCATGGAACAGCAACAGGCCAAAAACCGGGAGCTGCTGAAACAAGTGGCCGCCCTCTCAAAGGGCAAGAAGTTTGACAGGACAGGGAGTTCACTGCTGTTACCGTAACGACAAGCCCACCCAACCACGGCTCAGTGGCTTCATTGTTTTAACACTGAAAGCCTGATGCCATTctacctttccctccctccttcctgtgttttCTCAATCATTTTGATCTTTTCAGTTATGTTATTCGTTGGAAAACAAGTGACCATGCTATACATGGAAATCCTCTTTCATGTTGGCATGAAAATAAGGACGCATCCTCAATTTCAACATGTTTTAAATGTTCTAACCCTGAGTTTTACTCTGCCACTGGATGTGATGTGACTGTGGATGAGGAGAGAGCCTCGTTAACACTGCCCGGGTCCAGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005243 lncRNA upstream 11712 36182429 ~ 36182862 (+) True LOC110533099
TU1005252 lncRNA upstream 13598 36180743 ~ 36180976 (+) True G883429
TU1005249 lncRNA upstream 16492 36177822 ~ 36178082 (+) True G883426
TU1005244 lncRNA upstream 17170 36177165 ~ 36177404 (+) True G883421
TU1005248 lncRNA upstream 19677 36174485 ~ 36174897 (+) True G883425
TU1005268 lncRNA downstream 2819 36204299 ~ 36204683 (+) True G883444
TU1005356 lncRNA downstream 88962 36290442 ~ 36290667 (+) True G883507
TU1005357 lncRNA downstream 89610 36291090 ~ 36291311 (+) True G883508
TU1005307 lncRNA downstream 90822 36292302 ~ 36295547 (+) False G883473
TU1005310 lncRNA downstream 90822 36292302 ~ 36295547 (+) False G883473
XM_021618274.2 mRNA upstream 357 36183235 ~ 36194217 (+) False LOC110533767
XM_036990172.1 mRNA upstream 357 36183235 ~ 36194217 (+) False LOC110533767
XM_021618275.2 mRNA upstream 357 36183257 ~ 36194217 (+) True LOC110533767
XM_036990171.1 mRNA upstream 11512 36141669 ~ 36183062 (+) False LOC110533099
XM_036990170.1 mRNA upstream 55895 36126080 ~ 36138679 (+) True LOC110533766
XM_036990176.1 mRNA downstream 17887 36219367 ~ 36246315 (+) False LOC110533770
XM_036990175.1 mRNA downstream 27760 36229240 ~ 36246315 (+) True LOC110533770
XM_021618283.2 mRNA downstream 47394 36248874 ~ 36256624 (+) False LOC110533771
XM_036990177.1 mRNA downstream 47529 36249009 ~ 36256624 (+) True LOC110533771
XM_021618286.2 mRNA downstream 100374 36301854 ~ 36303664 (+) True LOC110533775
TU1004434 other upstream 508001 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 778336 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 872773 35318500 ~ 35321801 (+) False mogat3b
TU1003914 other upstream 872773 35318500 ~ 35321801 (+) True mogat3b
TU1003908 other upstream 874578 35316451 ~ 35319996 (+) False mogat3b
TU1005301 other downstream 91834 36293314 ~ 36295547 (+) False G883473
TU1005835 other downstream 597905 36799385 ~ 36801585 (+) True LOC110533788
TU1005877 other downstream 648166 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 2554029 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 5510847 41712327 ~ 41717292 (+) False G889906

Expression Profile