RNA id: XM_036990181.1


Basic Information

Item Value
RNA id XM_036990181.1
length 4622
RNA type mRNA
GC content 0.48
exon number 31
gene id LOC110533773
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36303733 ~ 36341819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGTTCGAAGACAGGTCGAATATTTGCAATGTATACATTTTAAATTCCGTAGTTGCACACACCACACCAAAATGATATATTTGATAATTGATGACGTACTTCCAAAACTATTTGCGCACGGGGAGACAATAGAAGCATTGGAACGAGAGGACAGGACACCATGGTTACAGTTCGTCTGCCACTTTTCTAATGCGGTAGCTAGTTTGAGAGGATTACGGAGCTCGTGTGATTGCATAAATAACGGGAACATTAACTAAAGATACAACTTCAAGgagGTGGGAGGTGAGGGCAGAGTTCATAGAGTTATGGAGAGTACTCTGACAGCCCGGGACAGGGTGGGGGTGCAGGACTTTGTGCTGTTGGAGAACTACACTAGCGAGGCGGCCTTCATTGAGAACCTGCGTCGACGCTTTGGAGAGAAACTCATCTATACCTACATAGGGTCAGTGTTGGTATCAGTGAACCCATACAAGGACCTGGAGATCTACTCCAAGGCGCACATGGAGCGCTACCGAGGGGTCAGCTTCTACGAGATATCACCCCACATCTATGCGGTGTCAGACAACACGTACCGAGCCATGCGGACTGAGAGGAGGGACCAGTGTATCCTGATCTCTGGGGAGAGCGGAGCAGGGAAGACCGAGGCCTCTAAGAAGATCCTCCAGTACTATGCCACTACCTGCCCTGTCACTGACCACATGAGCACGATCCGGGACCGGCTGCTGCAGTCCAACCCTGTTCTTGAGgcctTTGGTAATGCCAAAACATTGCGAAACGACAATTCCAGCCGCTTTGGAAAATACATGGATGTCCAGTTTGACTTCAGGGGGGCACCCATAGGAGGCCACATCCTCAATTACCTACTGGAGAAGTCTCGTGTGGTGCACCAGAACCACGGAGAGAGGAACTTCCATATCTTCTACCAGCTGCTGGAGGGAGGAGAACAAGACCAGCTCAGCAAGCTGGGCCTGGAGAGAAACGCTCAGAAATACCACTACCtggtcaagGGTTGCTGTCCCAGGGTGAGCTCCATCAATGACAAGAGTGACTGGAAAACAGTGAGGAAAGCCCTGACCGTCATCGGCTTCcatgaagaggaggtggagGATCTGTTGAATATAATCGCAAGTGTCCTTCATCTTGGGAACACTCAGTTTGgagaaggggaggatggagaaacCCAGATCACCACTGAGCCACAGCTCACATATCTGTCCAAGCTGTTGGGTGTGGATGGACCAGCACTGAGAGAGGCTCTCACTCATAAGAAACTCACTGCCAAAGGGGAAGAGATGATAGGCCCGTTGAGTTTTGAGCAGGCTGTGGCAGCCCGTGATGCCTTGGCCAAAGCGGTTTACGGCCGTGCCTTCACCTGGCTGGTGGCGAAGATCAACCAGTCTCTGGCTTTCAAGGATGAAGTGTACAACAGCAGTAAGGGCTCATCATCAGTCATAGGACTGCTGGATATCTACGGCTTTGAGGTCTTCCAACACAATAGTTTTGAGCAGTTCTGCATCAACTACTGCAATGAGAAGCTGCAGCAGCTGTTCATCAAGCTCACCCTCAAGTCTGAGCAGGAGGAATACGAAGCAGAGGGCATCACTTGGGAGCCGGTGAAGTACTTTGACAACAAGATCATCTGTGACCTGGTGGAGGAGAAACACAAAGGCTTTATCTCCATCCTGGATGAGGAGTGTTTGAGGCCAGGGGAGCCCAGTGATATCTCCTTCCTGGAGAAGCTTGAGGACACTTTGGGAGGCCATGCCCATTTTGTCACTCACAAATTGGCGAATGGGAAGACACGCAAGGCGGTGGGCAGGGAGGAGTTCAGACTGATTCATTATGCTGGAGAGGTCAACTACACTGTCAATGGGTTTCTGGACAAAAACACCGACCTGCTCTACAGAAACCTGAAAGAGGTCATATGCCAGTCAGATAACCAAATCCTGAGTCAGTGCTTCAACAGAGAGGAGGTGACGACCCAAAAACGCCCAGAGACGGCTGCCACTCAGTTTAAGAACAGCCTGGCCAAACTGATAGAGATCCTGATGTCTAAGGAGCCATCCTATGTGCGCTGTATCAAACCCAACGATGCCAAGCAGTCAGGGAGGTTTGATGAGGCTCTGGTCAGACACCAGGTCAAATATCTGGGTCTGATGGAGAACCTGAGAGTCAGGAGAGCTGGCTTTGCCTACCGCCGGCGCTACGAAGCCTTCCTACAGAGGTACAAGTCTCTGTGTCCCGGGACGTGGCCTAACTGGCAGGGCAGACTGGCTGATGGAGTTGCCACTCTGGTCCAACACCTGGGCTATAAACCAGAGGAATACAAACTGGGAAAGACCAAGATCTTCATCCGTTTCCCAAAGACTCTGTTCACCACTGAAGATGCCTTGGAGGCCAGGAGGCCCGCCCTCGCTCTCACACTACAGACCTCATGGAGGGGCTACAGAGAGAGGGCCAAGTACCACCGCATCAGAAACGCAGTGCTAGTGATCCAGTCTGCCTGGAGAGGGATGAAATCCCGCCGTAAGGCAAGGCGCCGCAGACACGCTGCTGAAATCATACGCAAGTTCATCAAGGGCTTCATCTACCGCCACTATGAGCGCTGTCCAGAGAATGAGTACTTCCTGGACCATCAGCGTTTCTCTTTCCTGATGACGCTGGTTAGGAACCCGCCCAAGAGTGTCCTGGACAAGAGCTGGCCCGTCCCCCCACCTAGCCTCACTGAGGCGTCAGAGCACCTGTGCAGGCTGTGTATGCAGAACATGATGCGGGCCTACTGCAGGAGGATCCAGCCAGAGTGGAAGAAACAGATGGAGCAGAAGGTGGTAGCCAGTCAGATCTTCCAGGACCAGAAGGACAGCTATCCCCAGAGTGTCCCCAAGCTGTTTGTGGCCTCCAGACTAGACAGTGAGGAGTTCAACCTCAAAGTGATACAGACTCTGGGCAATGACAAAGTGAAGTATGGAGTTGCGGTGACTAAGTATGATAGGAGGGGTTACAAGGCGCGGCCGCGCCAGctgctcctcacctcctcctttgCTGTGCTGGTAGCTGAGGCCAAGCTGAAGCAGAGGATCGACTACGCGGCCCTGAGGAGCATCTCTGTGAGTTCTCTGACTGATGGGTTCATGGTTCTGCACGTGCCCAGTGAGGATAACAAGCAGAAGAGTGATGTGGTGCTCCAGTGTGATCATGTGATCGAGGTGGTGACCAAGCTGGCCACCATGGCGGACAAGAAGAACAAGGTCAACATCAGCCAGGACAGTATTAAGTTTGCGGTGGCTCGGGGGAAGGAGGGGGTCATTGATTTCACCAGTGGACCAGAGTTGAAGGTAGCCAAAGGCAAGAAAGGACACCTGCTGGTGACGGCCCCTCAACTCAACCCAAGATGACGACCTCGCTGTAATCCACAGAGAACCAATCATTCCACAGGATGATTTCCTGCTTTAGCCAATCAGATTATAGCCACACAGAAGTTATTTTTCTCCATTAAATGTGAGACCACAGCCATACACTGCCTACAAGATCATTATTTTCTCCGTTAGCACAATTGAACTTATAAATCTTAATTTAGATAGTTATTGATTTAAAATGACATATTATCATATATAAATGGATTCAGTGGTTTTGCCGGAATTCATAATACTTTGTTGTTTATTAACAAAACTCGTATTAAATGAAACAACACATTTTCAATCTTATGCTTCATCTTTATTTTGTAGTCCTTTACAATATATTTGCtcatgtatgtaaaaaaaaatatatttagatttccataataacaaaaataaacaccattttacaaataaataagtaataaataagtaaataaataggCAAAAAGGCATCTTTGGAAAGTACAGTGAACTGAGGACTGTTGAGAAAGGGGATGTTGGGTAGTGTTTCTCAACACTCTTCCAGCTCTCAGCTGTTAGAgtcagcgagcgagacagagaaagaaaagaaGGAAACTCCGGGAGAAACCCAGAGTAGAGTAAGACATACAGCAACACTATGCGTAAACTTGGTTTCAGTCTAACAAAGTCAACCGAGCATCTCACAACAATGAGAAATCATGATCTTAGGGAATACTATAAATTATAAACCAGGTAGTTTggctcctggatgctgattggcggAAAAGCCGTAgtatatcagacaatataccatgggtatgacgcAAAACTACTTGTTTTCTGTTATaactacgttggtaaccagtttataatagcaataaggcacctctggggtttgtggtatatgagcaatataccacagctaaggtcAGTATCCAGGCACTCTGGGATGCAtcatgcctaagaacagcccttatccTTGGTATATagggccatataccacaccccctcgggccttattgatTAATTGAACCCTATCATTAATGCAGTTGAAATAACAACAGCAGGTATTGACATCACTTGGCAATATTGAGTcacagtactgtatttctgtCATAGTAATACTGAAtgaaatatatcattattatcaACTTATAATAACGCTGATTATTATCATCATAATGAATAATACTAATATCATTATTATTGGTGTTATTAGCTGCCTTGTTACTTCTGAAATAAACTGTGTGCATTGACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005263 lncRNA downstream 120693 36181976 ~ 36183040 (-) True G883440
TU1005257 lncRNA downstream 130284 36173028 ~ 36173449 (-) True G883434
TU1004883 lncRNA downstream 431013 35872465 ~ 35872720 (-) True G883115
TU1004880 lncRNA downstream 431999 35871515 ~ 35871734 (-) True G883112
TU1004781 lncRNA downstream 560633 35690518 ~ 35743100 (-) True G883030
TU1005601 lncRNA upstream 2006 36343824 ~ 36344118 (-) True G883736
TU1005602 lncRNA upstream 2407 36344225 ~ 36344469 (-) True G883737
TU1005603 lncRNA upstream 2741 36344559 ~ 36344786 (-) True G883738
TU1005607 lncRNA upstream 8320 36350138 ~ 36350433 (-) True G883741
TU1005580 lncRNA upstream 31896 36373714 ~ 36377090 (-) True G883715
NM_001124693.2 mRNA downstream 8216 36293313 ~ 36295517 (-) True epd
XM_036990178.1 mRNA downstream 14012 36277054 ~ 36289721 (-) True LOC110533772
XM_021618270.2 mRNA downstream 185973 36104781 ~ 36117760 (-) False ercc6l
XM_036990169.1 mRNA downstream 185973 36104781 ~ 36117760 (-) True ercc6l
XM_036990167.1 mRNA downstream 201085 36086295 ~ 36102648 (-) True LOC110533762
XM_036990184.1 mRNA upstream 57122 36398940 ~ 36592948 (-) False LOC110533100
XM_036990185.1 mRNA upstream 57122 36398940 ~ 36592948 (-) True LOC110533100
XR_005053646.1 mRNA upstream 256554 36598372 ~ 36604502 (-) False LOC118966763
XM_021618288.2 mRNA upstream 276313 36618131 ~ 36634904 (-) False tmprss13b
XM_021618289.2 mRNA upstream 276313 36618131 ~ 36635441 (-) True tmprss13b
TU1004896 other downstream 422782 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 704648 35598317 ~ 35599085 (-) True G882971
TU1004310 other downstream 875525 35427249 ~ 35428208 (-) True G882631
TU1004213 other downstream 982027 35320814 ~ 35321706 (-) True G882539
TU1004252 other downstream 999678 35302914 ~ 35304055 (-) True G882578
TU1005623 other upstream 48179 36389997 ~ 36390914 (-) True G883753
TU1005624 other upstream 49285 36391103 ~ 36392527 (-) True G883754
TU1006338 other upstream 317700 36659518 ~ 36665357 (-) True scn4bb
TU1006746 other upstream 975099 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 1256815 37598633 ~ 37703786 (-) True LOC110533823

Expression Profile