RNA id: XM_036990184.1


Basic Information

Item Value
RNA id XM_036990184.1
length 6761
RNA type mRNA
GC content 0.58
exon number 33
gene id LOC110533100
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36398940 ~ 36592948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGCAGGGCTGGAGAGACCGCTGGGGAGCATAGTCGCCAGTCCAGCACGGAGACTCGCCTGGCCAAAGACTGCGCCGCACACTCGCCAGGATTGCCAAACATTCCTGAAAAATATACCTGCTATTTATGGCATGTGGCTTGTAACTTTACTCCTGCTGTACTCTCTCCAGGAAGTACACAGTGAGGATGTGGGCTCTACCAGGCTGTACTTTGTGAAGGCGTCCCTCCAGAGGCTGACCTACTCCAGCTCGGTGGGGGTGTCTCTGCCCTGTCCGGCGGGCGGCACCCCCACCGCCATCCTGCGCTGGTACCTGGCCACCGGCGATGACATCTATGACGTGCCCCACATCCGTCATGTCCATGCCAATGGCACCCTCCAACtctaccccttctctccctccgccTTCAACTCCTACATCCACGACAACGACTACTTCTGCACCGCAGAGAACCAGGCTGGCAAGATCCGCAGCCCCAACATCAGAGTCAAagctgTGTTCAGGGAGCCGTACACGGTGCGTGTGGCAGACCAGCGGTCCATGCGGGGCAACGTGGCCGTGTTCAAGTGCCTCATTCCCACCGCCGTGCAGGAGTACGTCAGCGTGGTGTCCTGGGAGAGAGACACCGTTTCCATCATCCCAGCTAACAGGTTCTTCCTGACATCCTTTGGTGCTCTGTACATCTCAGATGTCCAGAAGGAGGATGCCCTCTCCACCTACCGCTGCATCACCAAGCACAAATACAGTGGAGAGACACGCCAGAGCAATGGAGCCAGGCTGTCTGTCATGGaccCCACAGAGTCGTCTCCCACTATCCTGGACAGTTTCCTAGCGGGGGAGGTGCGGGCGGGTCTGAGTGTGGAGCTTCCCTGCATTGCAGCAGGGTACCCCAGCCCCACAGTGCGCTGGCTGAAGGACGGCCGCCCACTGCCTTCCGATGCCCACTGGACGCGGCGCCTCACAGGTCTGACCATTAGTGACCTCAGGCAGGAGGACAGCGGCAGCTATGCCTGTGAGGTCACCAACAGCTTCGGCTCCAAGGAGGTGTCCGGAGCACTCTATGTCATAGacCCCCTGCGAGTGACCCTTTCCCCCAAGAGTCTAAAGACGGGCATCAGCAGTACCCTGTTCTTTACCTGTGCTGTGGAGGGTTCTCCAGAGTACACAGTGGCCTGGTACAGGAACACAGACCCTATAATCCCAGATCAGCACATCTCTATCCAGGGCCCCCACAACGACACCCTGCAGATCACAGCGGCTCAGAAGAGCCACTCTGGGGCCTACCAGTGCTTCGCCTCCCGCAAGGGCCACACTGCCCAGGACTTCTCTATCATACTGCTGGAGGatGGTACTCCTCGTATCGTGTCGTCCTTCAGTGAGCGCGTGGTCGCCCCCGGGGAGCCTTTCTCCCTGATGTGTGGCGCCAAAGGAGCCCCACCACCTTCCATCACCTGGACGCTGGACGACGAGCCTGTGGTGCGAGACTCCGCCTACAAGACAAGCCAGTACACCCTATCAGACGGCCTGACCGTGTCACATGTCAACGTAAGCAGCCCGGCCATCCGCGACGGGGGAGTGTATCGCTGCGCTGCACGCAACTCGGCCGGTAGCGCCGAGTACCAAGCGCGCATAAACGTAAGAGGTTCTCCTAGGATCAGGGAGATGCGTGACATCACGGCTGTAGCTGGAAGGAACACCTTTATAACCTGTCGTGTGATTGGTTACCCATACTACTCTATCAAGTGGTTTAAGGACGGCATGCTGCTGCCTGACAACCATCGCCAGGTTGTGTATGAGAATGGAACCCTGAGGCTGAGTGATGTGCAGAAGGGCATGGACGAGGGTACCTACCTGTGTAGTGTGCTCATACAGCCACAGACCTCCATTGACCAGACTGTCCACGTCACTGTGAAAGTGCCGCCCCTGATCCAGCCCTTTGACATCCCTTCCACGTCGGTGGGAAAGCTGATGTACATCGCCTGCGTGGTGTCGTCAGGTGACATGCCTATCCGCATCACCTGGCACAAAGATGGGCAGCTTATCGTGCCTGGCTCCGCCTCCGGCGTTGGCATAGAGACCAAGGAGTTCATGAGCTCCCTGCAGATCTCCAAGGTGACCCTGAAGCACAACGGcaactacacctgcattgctagcAACGCCGCGGCAACCGTCAGCTGGGAGAGACAACTGATCGTCAccgTTCCCCCTCGCTTCGTGGTACAGCCTAACAACCAGGATGGGATCTATGGGAAGGCAGGAGTACTCAACTGCTCTGTGGAGGGATACCCTCCTCCCAAAGTCATGTGGAAACACGCCAAAGGTATAGGGAACCCCCAGCAGTACCACCCTGTGCCTCTGACTGGTCGGATCCAGATCATGGGGAACGGCTCCCTGCTGATCCGTCATGTCCTGGAGGATGACCGGGGATACTACCTCTGTCAGGCCTCCAACGGAGTGGGCTCTGACATCAGCAAGAGCATGGTTCTTACTGTCAAGAttccAGCCATGATCACGTCACACCCCAACACCACCATGGCCATCAAGGGCCAGGTGAAGGAGCTGAACTGCACAGCGCGGGGAGAGCAGCCCATCATCATCCGCTGGGAGAGGGGCGACACCGTCATCGACGCCGAGAGGAACCCCCGCTACTCCATCACCATCAACAAGAAAGGGGACGAGGTCATCTCCACGCTCAAGCTGAAGCCAGCGGAGCGCGGGGACTCAGTCTTCTTCTCCTGCCATGCCATCAACTCATACGGAGAGGGGCGAGGACTCATCCAACTTACCGTGCAAGagcctccTGACCCTCCTGAGTTGGAGGTGAGAGAGGTGAAGGACCGCAGTATGAACCTGCGCTGGATCCAGAGGTTCGACGGCAACAGCATCATCACCAGCTACGACATTGAGTATAAGAACAAGTCTGATACTTGGGATCACAAGTACACCACCAGGAACATCTCCCCCACTAACAACCAGGCTAACATCGTGGAGCTGCACCCTGCCTGTGTCTACAGCATCCGCATGTACTCCTTCAACAAGATCGGACGCAGCCAGCCTAGCAAGGAGCTCACCATCAGCACTGAGGAAGCACAACCTGATGGGCCCCCTATGGATGTGATCCTCCAGCCAATGACGTCGCAGAGCATACGGGTCACATGGAGGgCCCCCAGGAAGGAGCTTCAGAACGGGGTGATCCGGGGCTACCAGATTGGTTACCGTGAGAACGGGCCGGGCAGTAACGGCCAGTACAGCATTGTGGAGATGAAGGCCACAGGGGACAGCGAGGTGTACACTCTGGACAACCTGAAGAAGTTTGCCCAGTATGGAGTGGTGGTCCAGGCCTTCAACAGGGCTGGTACTGgcccctctagcactgagatcaACGCTACCACACTGGAGGATGTGCCCAGCCAGCCACCCCAGAACGTGCGGGCCATCTCGGTGACGTCAGACGAGGCGGTGATCACGTGGGCGGAGCCCCCGCGTCTGACGCTGCATGGCGTGCTGAAGGGCTACCGCGTGGTGTTCTGGTCCCTCTTCCCTGACGGAGGTGGGTGCTGTGGGGGCCAGGCACAGGGGCCCATGCAGAaatgGGGAGAGATGCAGAACATCACTACAACTCGTGAGCAGGTGGAGCTGAGAGGGCTGGAGAAGTTCACTAACTACAGTGTCCAGGTGCTGGCCTACACACAGGCTGGGGACGGGGTCAGGAGCAATGTCCTGTACATCCAAACCCGCGAGGaccTCCCAGGTCCTCCAGCTGGTATCAAAGCCGTGCCCTCATCTCCCAGCAGTGTGGTCGTGTCCTGGCTACCCCCCCATAAACCCAATGGTGTCATCCGCAAGTACACCATCTACTGCTCCAGCCCAGGCTCCGGACAGCCGGCTCCCAGTGAGTATGAGACCAACCCAGAGATGTTGTTCTACAGGATCACCCATCTGACCCGCGGTAAACAGTACCTCATCTGGGCCGCCGCTGTGACAACCGCTGGCCGCGGCAACATCAGCGAAAAGGTCACCGTGGAGCCTGCTGGGAAAGCCCCAGCTAAGATCCTGTCGTTCGGGGGCACAGTGACCACTCCCTGGATGAAGGAGATCCGTTTGCCTTGCAGCTCAGTGGGAGAACCCACCCCCACCTTCAAATGGACCAAAGACAGtgagtACACGGCTATTCCTGTGACTGTGGACGGACAGCGTCAGATCCTGTCCAATGGTACTCTAGTGCTACGTTCCGTCAAAGCTGAGGATTCTGGGTACTACACGTGCACGGCCACCAACACGCTGGGCTTTGACACCATCATTGTCAACCTGCTGGTGCAAGTTCCTCCAGACCAGCCCCGTCTGACCGTCTCCACCACCTCTACCTCTTCCATCACCCTGGCCTGGATACCTGGGGACAACGGAGGCAGCTCCATCAGAGGTTTTGTCCTGCAGTACTCGGTAGACAAcacagaggagtggagggatgtgTTCATTACTTCCACTGAGCGTTCCTTCAGGCTGGACAACCTGCGCTGTGGCACCTGGTACAAGGTCAAACTGGCAGCCAAGAACAGTGTGGGTTCAGGACGCATCTCTGAGATCATCGAGGCCAAGACGCACGGACGAGAGCCTGCGTTCAACAAGGAGCAGCCCCTGCTCACCCACATCAACTCCACCCACGCGGGGCTCAACCTGCAGGGTTGGACCAGCGGAGGCTGCCCCATCACCGCTCTGCTGCTGGACTTCCGGCCCAAGGGCACGTGGGCCTGGCAGAGCCTGAAGGCCAACGCCACAGCCCAGCTCTTCCTCAGCGAGCTGCGGGAGGCCACCTGGTACGAACTGAAGATGAAGGCCTGCAACAGTGCCGGCTGTGGGAACCAGAGCTCCCAGTTCGCCACCACAGACTACGATGGCAGTACCATCCCTCCTATAAACTCGGCCCAGGAGGACAGAGACGATGTGAAGAAGCTGTTCTCCATAGGCTCTCCTGTCATCCTGGTCACCCTGGGCGTCGCCCTGCTCTTCATCATCCGCAAGAAACGCAAGGAGAAGAGACTGAAACGACTCAGAGATGCTAAGAGCCTTGCAGAGATGCTTATCAGTAAGAACAACCGCAGCATGGACACCCCAGTGAAAGGTCCTCCCCAGGGTCCCCGGCTCCACATCGACATACCCCGTGTCCAGCTGCTCATCGAGGACAAGGAGGGGATCAAACAGATAGGTGAGGACAAGGCAGCGGCCCCAGTGACGGACACCGAGTTCAGCCAATCTGTGAATCCACAGAGCTTCTGCACGGGCGTGTCTCTGCACCACCCCGCCCTCATCCAGAACACAGGGCCATTGATTGACATGTCAGACATCCGCCCTGGAACCAaCCCAGTGTCGAGGAAGAGTGTGAAGTCGGCCCACAGCTCCAGGAACCGTTACTCCAGCCAGTGGACCTTGAGCAGGCCGGGCCAGAGCCAATCAACAGCCTCCGCAAGAACTCTGACCTCTGACTGGCGCACCATGGGCTCTCACGGCATCACCGCCACCGAGAGTGACAGCTACAGCGCCAGCCTGTCGCAGGACACTGATAAGGGTCGTAACAGCATGGTGTCCACAGAGAGTGCGTCGTCTACGTACGAGGAGCTAGCGCGGGCCTACGAACACGCCAAACTGGAGGAGCACCTGCAGCATGCCAAGTTCACTATCACAGAATGTTTCATCTCCGACAGCTCCTCTGATCAGATGACCACTGGCACCAACGACCCGGCCGACAGCATGACATCACTCAGCACGCCGTCCGAAACAGGCCTTTGTCGCTTCACCGCCTCGCCACCCAAACCCCAAGACTATGACCGCGGCAGACCTACCAATGTGGCCGTGCCCATCCCCCACCGCGCCAACAAGAGTGAATTCTGCAACCTCCCACTCTACATGAAGACAGACCCTTTCTTCAGGAAACAGGCAGAACTGCATGACCCGTGCCCTGCTGTACCGCCCCGGGAGGCCTCCATCCGCAGCCTGGCACAGCGGGCGTACCACACCCAGGGCCGTCACATGACTCTGGACCCGTCCAAGCAGCAGGCCCTGACGCTGGGACACTCTGGGCTGGGCAGCTTGGGTGTGAGCTCAGGTACTGCCACCCTGCCCCAGAGGACTCTCACTATGCCCAGCTCCAACCCTGCAGCCACAGCCTCCACCTCCAGCACCAGCAGTAATCCCACTGGCTCCAGCACCAAGATGGGGGGCTCCAGAGACTCACTGCTAGAGAACAGCTCCTCAGCGTTGGGCAGACTGCAGAAGCAAGGGGTCGGGGCCTACTCCAAGTCTTACACACTGGTGTAGCTACtagccccccttctctctctcaaagaCTATACACTCCTGTCTGGCCCGGCCCTACACCAGTGTTCTACACATCAGGTCAGGGTGGGTAtgtagtgcagtgcagtgcagcaGGTGTCCCCAGCTAACAGCTAACTACTGTAACAGCTAATTACCCAGTAGCTTGAGTAGTCTTTATTCTGACCTTGGGTTCTGCCTCCCAGGAATGACCAGAGACCATTGTAACCTGCCTGATTCATGCTCACCTGGACCTGTATAAAACAAACTACTATCTACTGACTACCAGTTAGCCTGCTGCCATGCTAGCATGCTGCTCAGTATCCGGGGacgtatccacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacactcacactcacacgcacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005578 lncRNA downstream 3440 36394801 ~ 36395500 (-) True G883713
TU1005626 lncRNA downstream 5567 36393142 ~ 36393373 (-) True G883756
TU1005616 lncRNA downstream 20659 36377993 ~ 36378281 (-) True G883746
TU1005580 lncRNA downstream 21850 36373714 ~ 36377090 (-) True G883715
TU1005607 lncRNA downstream 48507 36350138 ~ 36350433 (-) True G883741
TU1005666 lncRNA upstream 5419 36598367 ~ 36604099 (-) True LOC118966763
TU1006327 lncRNA upstream 46310 36639258 ~ 36639500 (-) True G884366
TU1006328 lncRNA upstream 47278 36640226 ~ 36640448 (-) True G884367
TU1006340 lncRNA upstream 64882 36657830 ~ 36658233 (-) True G884379
TU1006352 lncRNA upstream 79304 36672252 ~ 36674008 (-) False LOC110533101
XM_036990179.1 mRNA downstream 57121 36303733 ~ 36341819 (-) True LOC110533773
XM_036990181.1 mRNA downstream 57122 36303733 ~ 36341818 (-) False LOC110533773
XM_036990180.1 mRNA downstream 72229 36303733 ~ 36326711 (-) False LOC110533773
XM_036990182.1 mRNA downstream 79326 36303733 ~ 36319614 (-) False LOC110533773
NM_001124693.2 mRNA downstream 103423 36293313 ~ 36295517 (-) True epd
XR_005053646.1 mRNA upstream 5424 36598372 ~ 36604502 (-) False LOC118966763
XM_021618288.2 mRNA upstream 25183 36618131 ~ 36634904 (-) False tmprss13b
XM_021618289.2 mRNA upstream 25183 36618131 ~ 36635441 (-) True tmprss13b
XM_036990186.1 mRNA upstream 59759 36652707 ~ 36665717 (-) False scn4bb
XM_036990187.1 mRNA upstream 59759 36652707 ~ 36665717 (-) False scn4bb
TU1005624 other downstream 6413 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 8026 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 517989 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 799855 35598317 ~ 35599085 (-) True G882971
TU1004310 other downstream 970732 35427249 ~ 35428208 (-) True G882631
TU1006338 other upstream 66570 36659518 ~ 36665357 (-) True scn4bb
TU1006746 other upstream 723969 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 1005685 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1646002 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2590750 39183698 ~ 39185494 (-) True rpl36a

Expression Profile