RNA id: XM_021618289.2


Basic Information

Item Value
RNA id XM_021618289.2
length 2000
RNA type mRNA
GC content 0.52
exon number 14
gene id tmprss13b
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36618131 ~ 36635441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAAGGAATGTAGTTCAGTCATTGTGTGTACAAGTCACCCTCCTATAGCACCTTTCCCACCGGGCACATACTGGTTCAATCAACGTACTCAAAACAGATTTTTAGTTGTGGCGTCATTGGTAAAGTTTGGCCAGCATTGAAGAGAAaaggtggagggagggacagaggattGGATACCAGTGCCTGTAGTGTGAATGGAGTTCAGATTCAGGCGGTGACACTAAAGCACAGCGAACGgacagagactggagagagacttaCCAAGCTATAGAATCTCTCCTGTAGAATTGACCCAGATCCCAGTGAGGCCACGTGTCCCCAGAGGGCCACAGTGACTGTAGGCTTCCAAACACACAGATGGAACATGACCAGAACAGTGACTGCCCACCCCCATACTACTCGGTAGCAGTGCCCACCCAGCCCCCTCCTGAGTATGGAGAGGTGGTGGGGGCCAGAGGGATGTCTGACCCCTCTTCTCAGCCTTACTACATCCCCCAGCCTATGGCACATGTAAATGTTGTCCATGTTTCCCAGGGCGCCCCCCAACGTCGTAAAAAGTGCTTATCATGTGGGAACAGTTCCTGCTGTTACGGAGGATCAGGAGGGACCACCCTACTGCTGCTCCTCCTCGCTATCGCTATCTGGCTGGGAGTGCGTTATGGGCCATCCCTGGTGTCTGGCTCCCTGAGCGAGATGGAGAAAGACAGTTGCCCCTCCAACACCGTGGAGTGTGACGGCCGACGGGACTGCAAACTGGGCAGTGATGAGACCAATTGTGTAAGGTTCAGGTCGAATGGGGGTCTCCAGGTGAAGACAAGCAGCGCTGGTAATTTCCTCCCTGTGTGTTACAGTGGCTGGAACAAGGACCTGGCTGACCAGACCTGTGCTCAACTAGGCTTCAGAGTGAGTCATAACACTAGCAGTGTGAAAGATGAGTCCTCTACCACTCTCACTGTGACAGGGAAGACCTCCAACACCATCCAGGATAAGGTGTCAGTAAACTCAGCCTGCCCTAACAATGAAACTGTCTCCCTGCAGTGTATCAACTGTGGCAGGCAGAAGTTGTCCAGAATCATAGGGGGATCAGCAGCGAATCTGGGCGATTGGCCTTGGCAGGTCAGCCTCCACTTTCAGCGCTCTCACACCTGCGGGGGCACGCTGATCGCTCCTGACTTTGTGGTGACAGCAGCCCACTGCTTCCCCAGGAAGGTCTCATCGTACCTGGTGCCCAATAACTGGCATGTGTATGTGGGCATGGTTTCTCAGATGGTGCTGCCTCATCCTTATATGGTGGAGAAGATCATTGTCCATGAGAGCTATGACGACAAAACCAACAACTATGACATCACCCTTCTCAAACTCACACAGCATGTAGACTACTCCAACAACATCCagcctgtgtgtctgcctgcctatgACAAGATCTTCTCTCCTGGAACAAGATGTTGGACCTCTGGATTTGGGACAACAGAAGCGGGGGCAGCTCGTGGCTCCACGAATCTTATGGGGGTGTCTGTTGACATCATTGACTCCAACGTGTGTAACAGTAACACAGTGTACAATGGTAAGGTCTCTCAGAACATGTTCTGTGCTGGAGACATGGAAGGAGGCAAGGACTCCTGCCAGggGGACAGTGGTGGTCCCCTGGTGTGTAAAGACTCAGACCAGCTCTGGTACCTGGCGGGGGTGACCAGCTGGGGGGATAGCTGTGGCAAGAGAAACAGACCGGGGGTCTATAGTCGTGTCAGCCGCCTGCTGCCCTGGGTCTACAGTAAGATGCAGCAAGCAAGACCGTGATGTGACCACAGCTGCTGTCTTCCAAGGATGCTCAGCATGTATTTTGGACCTGACAATAAGATTGATACTGGCGTGAAACTTACAACACTGGCAGGGAATGGAAGGCTCTTCACTATACGTGCCTTTAAGCTTATATATGTTCAGTGTTTTTGTATTCATTCATTGTCATCAGAAGCTTGCAATAAATATTTTTCAATGTGA

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K09643 TMPRSS13, TMPRSS11; transmembrane protease serine 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005666 lncRNA downstream 14032 36598367 ~ 36604099 (-) True LOC118966763
TU1005699 lncRNA downstream 39678 36578014 ~ 36578453 (-) True G883822
TU1005664 lncRNA downstream 53232 36530408 ~ 36564899 (-) True G883791
TU1005682 lncRNA downstream 64191 36552139 ~ 36553940 (-) True G883808
TU1005641 lncRNA downstream 173031 36442425 ~ 36445100 (-) True G883768
TU1006327 lncRNA upstream 3817 36639258 ~ 36639500 (-) True G884366
TU1006328 lncRNA upstream 4785 36640226 ~ 36640448 (-) True G884367
TU1006340 lncRNA upstream 22389 36657830 ~ 36658233 (-) True G884379
TU1006352 lncRNA upstream 36811 36672252 ~ 36674008 (-) False LOC110533101
TU1006353 lncRNA upstream 36957 36672398 ~ 36673844 (-) False LOC110533101
XR_005053646.1 mRNA downstream 13629 36598372 ~ 36604502 (-) False LOC118966763
XM_036990184.1 mRNA downstream 25183 36398940 ~ 36592948 (-) False LOC110533100
XM_036990185.1 mRNA downstream 25183 36398940 ~ 36592948 (-) True LOC110533100
XM_036990179.1 mRNA downstream 276312 36303733 ~ 36341819 (-) True LOC110533773
XM_036990181.1 mRNA downstream 276313 36303733 ~ 36341818 (-) False LOC110533773
XM_036990186.1 mRNA upstream 17266 36652707 ~ 36665717 (-) False scn4bb
XM_036990187.1 mRNA upstream 17266 36652707 ~ 36665717 (-) False scn4bb
XM_036990188.1 mRNA upstream 17266 36652707 ~ 36665717 (-) False scn4bb
XM_036990189.1 mRNA upstream 36926 36672367 ~ 36682903 (-) False LOC110533101
XM_021618294.2 mRNA upstream 69006 36704447 ~ 36711929 (-) False LOC110533780
TU1005624 other downstream 225604 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 227217 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 737180 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1019046 35598317 ~ 35599085 (-) True G882971
TU1004310 other downstream 1189923 35427249 ~ 35428208 (-) True G882631
TU1006338 other upstream 24077 36659518 ~ 36665357 (-) True scn4bb
TU1006746 other upstream 681476 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 963192 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1603509 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2548257 39183698 ~ 39185494 (-) True rpl36a

Expression Profile