RNA id: XM_036990188.1


Basic Information

Item Value
RNA id XM_036990188.1
length 2782
RNA type mRNA
GC content 0.45
exon number 6
gene id scn4bb
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36652707 ~ 36665717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagggcagGAAGGCACtgagccaagagagagagagcagggacaaGTTGAGAGAAAGCCAGAGGGGTAGGCTAGCAGGCAAAGGGAAAAAGAAACTGGGGCTCTGCTATCCAGGAAGAAGAGACAGGACCGTCCGATCCAGCAGCCATAAGTCCCGGGGCTACTGCATCAGCACTCCTcctgtccatcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctttctctctctctctaactggggCTGCAGCCTGCCTTTCTCTGCAGAGGAAGCGCTGGCTGGTGGAATCTACTTGAATGCACCCTGACTGACTGGTTGTGCGCAGTGATTCTCCCCTGCTCTGCCGTGCGTTTGTCCTCACTGACTCAGCTGTGCTCTGTAGTCAGCCTGCTGGTCCAGCCTCTCGGGAACACAGCCACAGGAAGAGGAGTGTTGTGGGGCTGGCAGGCAGACGCACCACAACCAGGACTGGCTAACAACACAGTGGGACGTGGTACCTCGGTTGGGATCAGATCAGACACCCAGGCACAACACACAACCAGACCAGTGGGACTCTGGGTTACATCCACCTGACCACCAGAGGAGTTTTTGACGGGATAACTCCAGCCCAACAGACCCCGGGCTGGATCCCACAACAGGGGGTGTTTTGGACGGGTTCAGACTGCCATGGAAGTCCAGGGGAGTGGGGCTGAGCAGCCCAGGTCCAGGTGTCTGTTCTCCAGCCTGATCATCACTCTGCTGCTCAgtgTGTGGTCTGCTCAGGGCCTGGAGATGTCCACAGGGAAGGTCCCATTCATGGAGGCGCTGAACGGCAGTACTGTGCTGCTACCCTGCACCTACGCCAGCTGTATCGGCATCAAAAACCTTTACTTCAACTGGCAGTACAATGACAACGGCACTATGCAGAAGGTTTGTGAGTCAGTGATTCCGTCAGACGGGATGGATCCTCATCCAGTGAGTATCTACCGGGAGCGGGTGGAGTTTATCGGCACCAGTGATCACAACAACATCTCCATCCTGCTTTGGAACATCACCTTTGAGGACGAGGGCCAGTACACCTGCTTCGGACGCAACCCCAAAGAGAAGGGCAAGAACCACAGCGCTATCTTTACCCTTGTCGTGGTGGACGAGTTACGAGTGGTGGACAACACTCTCACCATCATAATTGCTTCTGCAGTGGGCGGAGCCATCGCCCTGCTGATGACTTTCATGCTGGTGAAGAACTTCATCCTTTTCGTTCTCTTCAAAATCGAGGAGAGGAAAAAGATCGAGTGCCTTGTACAATCTTCCTCAGCTGATGAAACAAACAATGTCTCAGGATCCAAAACTTCAAAACCACTGACACCAAAGAAGAAATGAGAGTACTTGCATGTATGTACATCCATATATAAACATACAGTTATAtctatgcatatactgtatttttaTGCATAAACATGTGTATTGACATGTGACTCCATGGGCAGGCTTCTTGGGCAGGTTTTTTGGACTGAGAAGCACGTCTGATGGAGAGACTTCATTGAAAGTGTTTGTTAGTCCAATAAGCTTAAGCTGTGTCCAAGAAACCGCTCCCATACGTTCTAGttgatatttaatttttttttaaattcagacCTGAACCTAGGACTGTTTTTCATATTATATTACACATAAAATATATGCTTAAGACGGGGAATAATGCTATGTAATAATGCTGTTTAAACTGTGTTGGATCCTACTCCTCTCTCCACCAACCAACCCCACTGCCCTGGGTTCAACTGAAACTGTCTACAAAATCAAACTTCAAAATGAAGAAAATGTATGGGATATTATTCACAGTTTAATTCAATCTCCAGTGACATTATGCCACTTCAGATCCAGCTTTAGTCCTATTGCACAATACCACTGATTCGTATCAAGTTTAGTTTAGTGCTGTTTAGAATACAATATTAACTCTGCTATTCCAAAAGTAATTAATTAACCCTGTTGTATCATATTTAGAAACTAGGGTCTCTAAAGGGTTTTGCTGCGGTGAGGAGTGAGAAAGGATCCAGTTCAGAACATTATACATTTTCTTTGCTTGATATAAAACACTGGTGCCTGTTAGCGCTTCTATCTTCCTCTGCTGGTAGGAAGACTAAATACTGCAAAACCATTTACCAAACGCAGCAAAACGCAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATAATACAAGCTGATGAATGAAATTATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCCTAGAAAAAGGAATAATACTACAAGCTGATGAATGAAATGATAGACAATCCCTTAACCAACCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006328 lncRNA downstream 12259 36640226 ~ 36640448 (-) True G884367
TU1006327 lncRNA downstream 13207 36639258 ~ 36639500 (-) True G884366
TU1005666 lncRNA downstream 48608 36598367 ~ 36604099 (-) True LOC118966763
TU1005699 lncRNA downstream 74254 36578014 ~ 36578453 (-) True G883822
TU1005682 lncRNA downstream 98767 36552139 ~ 36553940 (-) True G883808
TU1006352 lncRNA upstream 6535 36672252 ~ 36674008 (-) False LOC110533101
TU1006353 lncRNA upstream 6681 36672398 ~ 36673844 (-) False LOC110533101
TU1006355 lncRNA upstream 6681 36672398 ~ 36674008 (-) False LOC110533101
TU1006351 lncRNA upstream 6759 36672476 ~ 36673844 (-) False LOC110533101
TU1006354 lncRNA upstream 6759 36672476 ~ 36674008 (-) True LOC110533101
XM_021618289.2 mRNA downstream 17266 36618131 ~ 36635441 (-) True tmprss13b
XM_021618288.2 mRNA downstream 17803 36618131 ~ 36634904 (-) False tmprss13b
XR_005053646.1 mRNA downstream 48205 36598372 ~ 36604502 (-) False LOC118966763
XM_036990184.1 mRNA downstream 59759 36398940 ~ 36592948 (-) False LOC110533100
XM_036990189.1 mRNA upstream 6650 36672367 ~ 36682903 (-) False LOC110533101
XM_021618294.2 mRNA upstream 38730 36704447 ~ 36711929 (-) False LOC110533780
XM_021618295.2 mRNA upstream 38730 36704447 ~ 36711929 (-) False LOC110533780
XM_036990191.1 mRNA upstream 39132 36704849 ~ 36711929 (-) True LOC110533780
XM_036990192.1 mRNA upstream 67999 36733716 ~ 36746690 (-) True LOC110533103
TU1005624 other downstream 260180 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 261793 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 771756 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1053622 35598317 ~ 35599085 (-) True G882971
TU1004310 other downstream 1224499 35427249 ~ 35428208 (-) True G882631
TU1006746 other upstream 651200 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 932916 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1573233 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2517981 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 2551596 39217313 ~ 39217738 (-) True G887329

Expression Profile