RNA id: TU1006352


Basic Information

Item Value
RNA id TU1006352
length 1757
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110533101
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36672252 ~ 36682903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACATGAGTCGCCATTCAGACTCAACTTGCTACTGTAGTTGAACTTAACCCAGTATTAGTGATCCCTTTACATTCCACCACTTTTTTAGGCATCATTTCATGTTTTTTAACAAACAGCTATGTTATTGTATTTTAACTATGTAGTATTATGACTACTGGTAGTCTATTTGAGTCAATAATTTTACTGAGTAATAGTCCAAGAGATACCAGTATGTTGGAGGAATTTTTTTTAACCAAAATTGCTGTTCTTTGGAACTTTTTCACTAACATCAACTCACACTGGGACTGCTGGCCCAGCTGCCTGGCCTGGCctgttatgtctgtctgtctgtgcttctctcCATTAACTCTTGTTAGATATGGCTGAATTGGCACCAGCTGCAGTCTCTTGATGTGGTGGCATCCAACTCAACTAGCAGACTGGTTCAGCAACTCTTTGCTCCAGTATGCATCTTCTTCTTCATCACATTTGGGATGGTAGCCATTTGATCCAAATTTGTTTACAGAATTATTTTACCACTTGAATAATCAACATTCCTCTACAGTTGAGCTAATGGCTCATATGGACATCATTCCAAAATGAATGTTTTTGACAGCAAATTTGTGAGTGAGTTTTGTGGTTATGGTCAAGGTCCCATGGTGAGTTAAGTCAGTGAAACACTTTTGTTAAACCTGTGGTATCTGGGGGTTGCTAAGGTAAGGACAAGGGCTGGTGGAAGCCCTGTATCTGGCAGTGGCTAATGTTAAGGCTAAGGGCATTGGGCAGTAAGGCTTTTGGAAGCTTTCCTGGGCCAGGAGTTTTCTGTGACTATCTGCCATTTAGTTTTTCTGGCCAACGCTCTCCTGCTTCCTGCAAAAATGACAACTTAAATGACTGCCTATTACTTCTGGATATAAAAGGAACTGTGATACATCTTTGAATGTAGATGAAGAACCCCACCATTCCATGAAGAAGCCTGTTTACCATGAAGAAGCCTGTTTACCATGAAGAAGCCTGTTTACCATGAAGAAGCCTGTTTTCCATGGGTTCTGTCATTTTTGTGAACTGATGTTGCCACCATGTGTCCATTATAGGAAGCAGCTCCATCTTTCTCCATCTGTGTCCACACTGAGGATCATGGGTGTTGTGGTCTCAaaggtttctccctctctcatattcTGCCTCTCCTGTTGTATTACAAAGCTGCCCATGAGCCAAATGAACAGAGGAGTCTATCCAAGACACTGCCAACACCCCAGTCTGCCGCTCACTCCTACAGTGTACATGAGTATGACTTTCCGTTTAGGAGAAACATGAAGATGTCACTGACCCAATCATGAGGACATTGCCAGTCCATTCTAGCAGGATACTCTACAAGGTGCTGGTTCTGTTCACCTGCTTGTGCAGTTATCCAATCTGATGTGTTATGTCCCACCTGATCAATACCTGCCGCCACCCAGCCCCATTACCCTCCCATGGGACTGGAAACAGTATTCTCCTGGTAAAGAATTCCATGAATGATTCTATTGATTTATTTCATGTATGCGTTTGTAAAGATCAAAACTGTATATTTTATCACACGTTTTATAAGGTTGAGAGATTTATATTATTGTGTGTTTTTCAATAAAGGAATGCTTGTTTTGATGGTTTTAACTCGAAAGATGGTTTTCATGACATAAGATATAGGTTGTAAATCTGCCTTACCTATAAGACTAGAAAGGTTTTATAGCAAGATAGATACCGTACTGAAATGGGGGCATgaaagagaaaacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006340 lncRNA downstream 14019 36657830 ~ 36658233 (-) True G884379
TU1006328 lncRNA downstream 31804 36640226 ~ 36640448 (-) True G884367
TU1006327 lncRNA downstream 32752 36639258 ~ 36639500 (-) True G884366
TU1005666 lncRNA downstream 68153 36598367 ~ 36604099 (-) True LOC118966763
TU1005699 lncRNA downstream 93799 36578014 ~ 36578453 (-) True G883822
TU1006367 lncRNA upstream 28545 36702553 ~ 36702772 (-) True G884402
TU1006374 lncRNA upstream 48543 36722551 ~ 36722905 (-) True G884409
TU1006375 lncRNA upstream 49288 36723296 ~ 36723541 (-) True G884410
TU1006382 lncRNA upstream 58710 36732718 ~ 36732949 (-) True G884417
TU1006388 lncRNA upstream 66702 36740710 ~ 36742043 (-) True G884423
XM_036990186.1 mRNA downstream 6535 36652707 ~ 36665717 (-) False scn4bb
XM_036990187.1 mRNA downstream 6535 36652707 ~ 36665717 (-) False scn4bb
XM_036990188.1 mRNA downstream 6535 36652707 ~ 36665717 (-) False scn4bb
XM_021618289.2 mRNA downstream 36811 36618131 ~ 36635441 (-) True tmprss13b
XM_021618288.2 mRNA downstream 37348 36618131 ~ 36634904 (-) False tmprss13b
XM_021618294.2 mRNA upstream 30439 36704447 ~ 36711929 (-) False LOC110533780
XM_021618295.2 mRNA upstream 30439 36704447 ~ 36711929 (-) False LOC110533780
XM_036990191.1 mRNA upstream 30841 36704849 ~ 36711929 (-) True LOC110533780
XM_036990192.1 mRNA upstream 59708 36733716 ~ 36746690 (-) True LOC110533103
XM_021618297.2 mRNA upstream 106926 36780934 ~ 36785455 (-) False LOC110533783
TU1006338 other downstream 6895 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 279725 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 281338 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 791301 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1073167 35598317 ~ 35599085 (-) True G882971
TU1006746 other upstream 642909 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 924625 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1564942 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2509690 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 2543305 39217313 ~ 39217738 (-) True G887329

Expression Profile