RNA id: XM_021618293.2


Basic Information

Item Value
RNA id XM_021618293.2
length 2588
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110533779
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36683866 ~ 36698702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGAAGTGGACCATTGAgactggagagagaaaaggagggagggtagaggaaacGTTGCATGCTGAAGAGCGGGAGGTTGGGTTGACTCGACCAATACATTTCACATTTATTTTGCAGATGGTTGTTAGAGTTAGAACAACATATAAGCTATATCGTAGTTTATTGACTGAAAACAAGGAGTTGATTGTGTCCGGGTGAGTTGCTAGCCAGCTAGTAGCTAACTAGCGCCCGCCCCGACCGCAGCATCCGCACCGAAGCACTACGTTAGCAAGCCATCATTGATCGCACACGCACATCGGAGCCGTGCAGCCTCCGTGCGCGAGGGAATATTCTGGTTATATTGGCAACAATTAACCATCATCAGAGACCTCCAGGATGAGTGGTGATGAGATTAACCCCGCAGCGGTGGCCCAGGCAGTAGAGGACGTACAGGGAGACGACCGATGGATGTCCCAGCACACAAGATTTGTTCAAGAGTGTAAGGACGCGGAGCCGGAGGTGCTGTTTATAGGAGACTCCATGGTGCAGCTAATGCAGCAGTACGAGATCTGGCGGGAGCTTTTCTCTCCACTGCACGCGCTCAACTTTGGAATCGGGGGAGACACCACCTGTAATGTGCTGTGGAGGCTGCAGAATGGAGAACTGGACAACATCAGGCCCATGGTGACTGTGGTGTGGGTCGGAACCAACAATCATGAGCACTCAGCTGAGCAAGTTGCAGGGGGAATCCTTGCAATTGCACAGCTGCTCACCTCCCGTCTTCCAAAGACTAAGGTTGTTGTTCTGGGTCTGTTGGCACGGGGTGACGGGCCCAACCCGCTGCGGGAGAAAAACGCAGCGGTGAATGGCTTCCTGCGCTCCTGGCTGCCGCGGCTGGGCCAGGCCCAGTTCCTGGACGTGGGGGCGGGCTTTGTGCACTCTGACGGGACCATCTCCACACGGGACATGTTTGATTTCCTGCACCTGACGGCGGCGGGCTACCGGGCCATCGCCAAGCCCCTCAGTGACCTACTGCTGCAGATACTGGATGAGACGCCTGAGGAGAAGAGGGCCTCGCTGGTCTGAGGCCCACACCCCAGGGGCCACACATGCTTCACTGACTCCCTCCTTCTGTTGGGGAGTAGCTGGAAGTTTCCCCAAACCACTATTCCAGGgtctggtcctagatctgtggttaggggcGACTTCTACCTGGAGTCTCTACTGGGAACAGGGGAGGGGGGATAGTCAGGGGTGAGGCATGCTCCTGTCTGGGGAAGGGGTCAGATCAAGATATGTCACTCACATGAGGGGGCTGGGCCAAGCAGAGAGAATGGGCACTCTCATGTGAGTGGAACTGAAACTGCAGGAGGGAGAGTGCATGGGATCATGTGCATGTGTGCGGGGTGACTGTGTGGAGAGAGTCAACAACTTCCAGAGAGATATACATACATGCtgtagcagcaacagtagcacTTGCGGTCAGAGAGATCTGATagtgggaggatagagagagagatgggacattTCTGAAGTACACCTGCACAAGCATTATAGAGAGGCCAATGGCACAcatggccccccccccccccaaaaaaaacactgTAAAATGTCAGTTTTGCCATATGTAATGTAAAGTAGCTTCCTATTCGGTCACAGTTTAGCTGCACAGTAATAAGCACTCCGATGCGTTCTCTCTCAGAAATCAGTTTGAGTTGGCTCCATTTGCCCCAACAGACTTTTTAAAAGCTCTAAATTACCATCTGAGGACCAACTGCGAAAtattctctcctccccctctctctgctttgacacacacacacagcagtgaaGTCAAAGCTATCTTCCCGTAATGGCCTTCTGccatacacacactgtcagacacTGCCTCTCTTACACACAGAAAAAACTAACTAAAATCCCTGcactttctctctcctgctcACTCTCGCCGCTCTTCAtttttgtccttattttgtcttgtTGTGTAGTATACAGAACCCCCACCCAGCCCTGGCCACACTACCACCTGCCTCCTAACACATGACATTGTCGCAGGACGACTTAAACAGTAGCATCATGATAAAGCTATTGACACACAACATTGATTGAATTACTAGTCTACTACACTAAAAACCAACCACAGGTCACATAGAGAATGTCATGTGTTTGACCTTTCAACCCTGTTTTGTTTCCTGGTGCAGTTGAACTGAAGTGGTTAGAGGTCCTCTTGCTGAGCATCGACTGCTCTCATGTTATAACCGTCTACACGTATTCTTCTTGCGCTATGTTGATCTACATTCTGTATACGCGTGTGTGAGTAAACCTTAAACATAGCTGGAGGTGAGAAATGAGAAGTGTGTATGTCACTTATGTTTGAGTCTGTGCATTGGTTGTATGACTGTTTAGAAATGGCCCATTTgtatataatacatatatatgtgtgtgtgtgaagcttgGATAGATGGCCTTGTGTTGCGAATGTGGTAGTGTTTGTAAGAGAATGACCATTAGTGAGCATCTGTATTTGGTGCAAACTGTGCACTATATCTGGCTTATTGTCACATGCTGAGAAGACGGCGCAATCCAATAAAGGACCATGGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005757 lncRNA upstream 16965 36666638 ~ 36666901 (+) True G883877
TU1005744 lncRNA upstream 28945 36654696 ~ 36654921 (+) True G883864
TU1005739 lncRNA upstream 42659 36640992 ~ 36641207 (+) True G883859
TU1005738 lncRNA upstream 45179 36638479 ~ 36638687 (+) True G883858
TU1005726 lncRNA upstream 63669 36618880 ~ 36620197 (+) True G883847
TU1005768 lncRNA downstream 5232 36703934 ~ 36704237 (+) True LOC110533102
TU1005801 lncRNA downstream 31880 36730582 ~ 36730810 (+) True G883906
TU1005770 lncRNA downstream 34886 36733588 ~ 36735317 (+) False G883889
TU1005772 lncRNA downstream 34886 36733588 ~ 36734975 (+) False G883889
TU1005773 lncRNA downstream 36301 36735003 ~ 36746662 (+) True G883889
XM_021618291.2 mRNA upstream 33560 36645720 ~ 36650306 (+) True tmprss4b
XM_036990183.1 mRNA upstream 306727 36350070 ~ 36377139 (+) False LOC110533776
XM_021618287.2 mRNA upstream 306727 36350071 ~ 36377139 (+) False LOC110533776
XM_021618286.2 mRNA upstream 380202 36301854 ~ 36303664 (+) True LOC110533775
XM_021618283.2 mRNA upstream 427242 36248874 ~ 36256624 (+) False LOC110533771
LOC110533102 mRNA downstream 4016 36702718 ~ 36704449 (+) False LOC110533102
XR_005053648.1 mRNA downstream 13249 36711951 ~ 36713863 (+) True LOC110533781
XM_021618298.2 mRNA downstream 89758 36788460 ~ 36793079 (+) True LOC110533785
XR_002475041.2 mRNA downstream 100674 36799376 ~ 36801589 (+) False LOC110533788
XM_021618306.2 mRNA downstream 177973 36876675 ~ 36878956 (+) True mrpl48
TU1005301 other upstream 388319 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 997293 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 1267628 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 1362065 35318500 ~ 35321801 (+) False mogat3b
TU1005835 other downstream 100683 36799385 ~ 36801585 (+) True LOC110533788
TU1005877 other downstream 150944 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 2056807 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 5013625 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 5013625 41712327 ~ 41717292 (+) False G889906

Expression Profile