RNA id: XM_036990191.1


Basic Information

Item Value
RNA id XM_036990191.1
length 2202
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110533780
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36704447 ~ 36711929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCACGTCATCAAACGTGCAATGTTTATAATTTTCCAACGTGGGATGAGGAAACAGACAATTCAAAATATGAATTGGCCGTTTTTGATGACTACTAAGATGTACGTTGTCATTTAAGTTTCAGTTTCCTAACAAGCTTACCGCTGTTTCATTTTCATTTGTAGTCGAAgaaactaactaactagctagctagctagcaaacgatGGACGACATCGACTGGGGATTGGCGCTGGAGGAGGACATGGCGCGCTCTGTCTCCCAGCGAAACCTCCGCCATGGGAAACCCTGAGCAGCAATACAACCCCTGGTCCAACCAGTCCAACCCCTGGTCCGAGCCTGGCTACACCTCGGAATCTGTAGGGGAGCTGGACAAGCTGGCCTCGGGAGATGGACAGCATGTCACTCACAAGAAGAAGCAGGAGGGGCAAGGCGTTCAGACAGACGCCTGGACAGCAGACAAAGATGTTAACACCGATCTGGATTGGGAGTCACTGATGCGGTCAGTGGATGAGTACAGCACCCACCTGGCCATGCAGTATGAGGAGCTGATGAAGCACCAGGAGGAGGATGAGGCTGATCATGGCAGCCAAGTAGACAGTCTGGTGCAGAAGAAGGATGAGGGGGTCCACCAGCAGCAGGCGCTGCTGGACAAAATTGAGTCCCTGCATGTGAAGCTTCAGCTGAACTGCTGCAAGACCACCCGCAAGAACTTTGCGGTCCAGAAGCAGGAGCTCAGCATGGAGAAAAGcaaaatggaggaggagaggaacagACTGTCTCAGGAGCTGGAGGAGACCACCAGGAAGCTGGCTTTGCTGATAGAGGAGCAGAACCAGGAGAAGCTGATGTGGGAGCGGGAGCTAGCAGACCTGAACACTGAGATGGAGCGTCTACAGGAGGAGTCAGAGGAGACCACACAGAGAGCTCTACAGGAGGAGATTGCAGCTCTGGAAATGCAGAGAGATGTGACCATGTCTGAGGTGGACGACTGGCTGAAAGAGGCTGACCAATACATAAACACACTTGGGTTAGACTCCTCCCAACAGCAGCACATGCACCACAGGCTGGAGTGGGAGAATAATGTGGCTGTGGTTCACAGCAGTTTGGCGGGACTACAGaaTCAGTTCAAGGATTACCTTCACTTGCTGCAACAGGGCCAACCAATGGAAAGCCTCCCTGGAATCACATTACCACCCTTACCCCAGGTCCCCATGATGGGCCCTCCTAAAGCCATGGGGATGACCTTCACATCCCAGCCGCACCACCGTGCTGCTTTCACAGCCCCAGCCAGAGTAACCCCCCCACCtgccccctcctccactccccctgcCTCTGCTCTAGCCCAACACCCAGCCGCCCCACCTGTCTCCCAGTCCACCACTACCATGGCCTCCGCCCAGTCCCTGCCCTCCAATAACCCCCCCGCTGCTGGCAAACTGGACAATCTGCtgaagagactgggagacagattTCCACAGTGCAACAGaaccCAGCTTATGTCAGTTCTGCAGCAGATTAAGAATTCTCGGGGCACCATGGCTGGCATGTCTATTGATGACGTCACAAAGCAGGTGGCACAGAGACTGGCACAAAATGAGAAACCGGCACCAGGGCCTATCAGGCCTCCCTCTGCAGACAGGGGCGTTCCTGGCTACCCAGACCCAATCCAGCGCCCTCTAGGACCCATCCAGAGACCTGCAGTGGCCCAGGTCTTCCAGACCAGGCCCCCACAGCCTGTGGCTGTCAGTAATCGTAAGCTGTGCTTGATGTGCCAGAAACACTTGGAAGCAGACAGCCAGCACCCCATGAGCTgcgcacacactgtacataaggATtgCATCAGTGTATGGCTGCAGTCGAGCAAGTACAATGCCTGTCCCTTCTGTCCAGCAAAGTGAGAGGAGTAGCCGATCAGACCGAACGGAGAATACAACAGAAGACATGACGGGAAAGAGGAACACTGATATCGTTCTGGTCAGCTTCACACAACTGAAGTGGGAGATGGTGGAATATGATTCTCACCTACACAGAGCAGTCATGGTGACTTATTACTATTCACCTATGTGACACAATAAACACAAGTCGTTCATATTATTCATCCCTATATCTAGACTTGACTTTATGTAAATCATTTAGTACATCTTGTTAAAACAACTGCAGTGATAATCTGGCACTGACCAGAACTTTATTTTCTCTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006367 lncRNA downstream 2077 36702553 ~ 36702772 (-) True G884402
TU1006355 lncRNA downstream 30841 36672398 ~ 36674008 (-) False LOC110533101
TU1006354 lncRNA downstream 30841 36672476 ~ 36674008 (-) True LOC110533101
TU1006353 lncRNA downstream 31005 36672398 ~ 36673844 (-) False LOC110533101
TU1006374 lncRNA upstream 10622 36722551 ~ 36722905 (-) True G884409
TU1006375 lncRNA upstream 11367 36723296 ~ 36723541 (-) True G884410
TU1006382 lncRNA upstream 20789 36732718 ~ 36732949 (-) True G884417
TU1006388 lncRNA upstream 28781 36740710 ~ 36742043 (-) True G884423
TU1006363 lncRNA upstream 44073 36756002 ~ 36779726 (-) True G884398
XM_036990189.1 mRNA downstream 21946 36672367 ~ 36682903 (-) False LOC110533101
XM_036990186.1 mRNA downstream 39132 36652707 ~ 36665717 (-) False scn4bb
XM_036990187.1 mRNA downstream 39132 36652707 ~ 36665717 (-) False scn4bb
XM_036990188.1 mRNA downstream 39132 36652707 ~ 36665717 (-) False scn4bb
XM_021618289.2 mRNA downstream 69408 36618131 ~ 36635441 (-) True tmprss13b
XM_036990192.1 mRNA upstream 21787 36733716 ~ 36746690 (-) True LOC110533103
XM_021618297.2 mRNA upstream 69005 36780934 ~ 36785455 (-) False LOC110533783
XM_021618296.2 mRNA upstream 69005 36780934 ~ 36785487 (-) True LOC110533783
XM_021618303.2 mRNA upstream 84800 36796729 ~ 36799357 (-) False LOC110533786
XM_021618299.2 mRNA upstream 84800 36796729 ~ 36799380 (-) False LOC110533786
TU1006338 other downstream 39492 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 312322 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 313935 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 823898 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1105764 35598317 ~ 35599085 (-) True G882971
TU1006746 other upstream 604988 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 886704 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1527021 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2471769 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 2505384 39217313 ~ 39217738 (-) True G887329

Expression Profile