RNA id: XM_021618303.2


Basic Information

Item Value
RNA id XM_021618303.2
length 2037
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110533786
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36796729 ~ 36799658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGTAACATTGTAAACATTCCTCACGTCTATTGTTGTCAAAATATtatttgtagctagctagctagctactgaaacGTCCACGGCGAGTAGTTAACAATCACAGGATGAAGAGGAACAGAGAAGGCCTGGGATGACAACAGGGAGAGATAAAGACCCAGAGGACTGGGTTGCTAGGCTGGCTGGGCTGCTGCAAGAGGAGACACAGAAGAAGAGTCAACCGATCAGACCCCAGGGGTTGACTAATGCCTCCCAGACCAGGGTACAGGGACAGATGTGGACTGTGGAGGACAAGAGCAGGCAGGACTTCCTGTCCCTGAGGTACGACACCCAGAAGGGAGCCAGAGAGCTGGGGCAGAGGCTTGACTCAGCTGCTAAGCACTGGCTTAGGCCTGACCTAAGGACTGCTGCACAAGTAGAACAGTGTGTTGCCATGGAGCAGTTTCTGTCCCTATTGCCAAAGGAGGCTGGTGCCTGGGTGCAGAAGCAGCAGCCCAGGGATATGGAGGAAGCAATCAGCATGGCTGAGCAGCGGCTTGGGTCTGGGGTCTTCACCGTCTCCTCGCCTGCCCCTACACAGACTGACACAGCACAGAGCTCAACAGAGGCACATGAACAAGGgaGTGTCAAGATGCAGAGCACCAGTGATCAGCCAGATGCTTTGACCAAGTCATTTCTCAACCAGCTGGAGACAGTTAAACTGGAGTCTGTCCATTTCAGCCTGGAGATTCCTGACGTGGGGATGACCAGCTATCAGGAGGAGCAGGACGAGCATAAGAGGGTCCCAGAGGAAGGGTCCATCTTTGTGTGTAAGCAGGAAGTGGAAGATCCTGACTGGCATCAGGAGAGTGCTCCTCCAGAGCCCATCCAAATGTCTGTGAGAACAACAGAACATGAAAGCATGTCTGTGGACACACCTTACATCTTCCTTCCCAGAAAcaaccctctctcctccaccatgtACACGCATCCAACACCCACAGTGTCCAGTCAGATCCCCTCCCCACAGTCACCCCCACCCCTAGCTCCTGATGCCTATCATCCACATGTCCAGGACAGCCCAGTGATAGACGGACTGCGGAGTAATGCTTCTAGTGACGAGACTGAGCTTACTGCCAGGTACACAAGGCTAATCTCTGAAGATGGACAGTTGACCTGGGGGACCCTCTCGGGTGTTCCTTCACCCTCCTTCCACACTCGCCAGCCATCACCCTCGCCCTCCCATCAGTGCCCAGACTGTGGCTGCTGCTTCGCCCAGCAGAGGAACCTGGAGGAGCACAGGAACATTCACACGGGAGCGAGGCCCTTCGTCTGTGGGGTGTGTGGGAAGGCCTTCTGCCACCGCCGCACCctcaacaaacacacacgcatccACTCCTGGGAGAGACCCTTTCAATGTACTGACTGTGGACAGACCTTCAAACTCAAAGACACCATGAAGAGGCACCAGGTTTCCCACAGCAAGCCAGGGCCAGGGGCACGTCACCTCTCTCACTCACGCTGATACTCTAACTATCAGCACTTCACCTGGCTGGGAGGAGGCCTCATGAGAATTGACACACAACAATGACTTGAAGTAGGACTGGTCAGGTGGCTTTCTCTGTAAATGTCCTACGTAGGCAGATGTATTTGTGAGAACTACCAGTGTTTTCTGTTGGCGTGTTCCATAAACAGAGGACACTGCTTTGGGTTTCACAGGTGAACTGGTTGGTGGAACATCGCTCCCATGTTTCCATGTAAACAAGCTCAAATTACTTGTTCtttatttataatttttttgtaGATGCCCTTGATCCAAGATATAGGTATTTCATGCATTTTGATATTGTGATAGTtaatctttaattatttgtttgtgATCATGGTAGTACTTATTTTCAGAACAGAGATCAGAAAACATTGTGTGACAgtgtactgtatttatttttagaatcaatatgttttatgcatgatgtatgtacagtaccagtcaaaagcttggacaccttcattcaagggtttttctttatttgactattttctacatagtagcATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006363 lncRNA downstream 17003 36756002 ~ 36779726 (-) True G884398
TU1006388 lncRNA downstream 54686 36740710 ~ 36742043 (-) True G884423
TU1006382 lncRNA downstream 63780 36732718 ~ 36732949 (-) True G884417
TU1006375 lncRNA downstream 73188 36723296 ~ 36723541 (-) True G884410
TU1006374 lncRNA downstream 73824 36722551 ~ 36722905 (-) True G884409
TU1006501 lncRNA upstream 122809 36922166 ~ 36922366 (-) True G884519
TU1006524 lncRNA upstream 197135 36996492 ~ 36997565 (-) False G884542
TU1006525 lncRNA upstream 197135 36996492 ~ 37038509 (-) True G884542
TU1006646 lncRNA upstream 312794 37112151 ~ 37112932 (-) True G884653
TU1006602 lncRNA upstream 320298 37119655 ~ 37122677 (-) True sdhaf1
XM_021618296.2 mRNA downstream 11242 36780934 ~ 36785487 (-) True LOC110533783
XM_021618297.2 mRNA downstream 11274 36780934 ~ 36785455 (-) False LOC110533783
XM_036990192.1 mRNA downstream 50039 36733716 ~ 36746690 (-) True LOC110533103
XM_021618294.2 mRNA downstream 84800 36704447 ~ 36711929 (-) False LOC110533780
XM_021618295.2 mRNA downstream 84800 36704447 ~ 36711929 (-) False LOC110533780
XM_021618304.2 mRNA upstream 2839 36802196 ~ 36806013 (-) True LOC110533787
XM_021618305.2 mRNA upstream 37062 36836419 ~ 36851211 (-) True LOC110533789
XM_021618307.2 mRNA upstream 55960 36855317 ~ 36876106 (-) False LOC110533791
XM_021618309.2 mRNA upstream 55960 36855317 ~ 36876108 (-) False LOC110533791
XR_005053651.1 mRNA upstream 55960 36855317 ~ 36876119 (-) False LOC110533791
TU1006338 other downstream 131372 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 404202 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 405815 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 915778 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1197644 35598317 ~ 35599085 (-) True G882971
TU1006746 other upstream 517560 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 799276 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1439593 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2384341 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 2417956 39217313 ~ 39217738 (-) True G887329

Expression Profile