RNA id: TU1005835


Basic Information

Item Value
RNA id TU1005835
length 1598
RNA type TUCP
GC content 0.48
exon number 5
gene id LOC110533788
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36799376 ~ 36801589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCGGAAACAATATAAAACTGTTTACGTAACGTTATCTAGCTAACTGTAGACTAACTTGCACGAAATACAATACGAGTAAAATACCAAAAGAAGCCTTAGCTTTACGAGACTCCAAGAGTGGAACCATGGAAGTGGTGCGGTTATTTACAGACCTACTAGCAGTGCACAGACAGCAGCTACAAGCCCTGACTGTACAGGGAGAGATCCAGACTCTATGGTACAGTTACTGGAGAAGGAGGTGCTCAGGAGAATGGAGCCCAATGTGAAGCTGGAGGAAGTGGAGGATCAAGCCTGAGCCCAGTCAGGGCAGAACAGAGACTACAGCAGCAGGGCTTCAGCTCTATAAGGTACGACCCAGAGAGACCGCCCAGGGAGCTGGGGAAAGGGCTGGAGAGTGCTGCCCATTACTGTCTCCGAGGAGGACAGCTGTGGATGTGGTGAGGTGTGTggccctgcagagttctgtatccCTTCTCCCCAAAGACGTTGGAGACTGAGTGCTGAAACAGTTCCCCCAGGAGATGGAGGAAACTATCTGCATGGCTAAGGAGTACCTGAACAACACACCTGGGGAGTAGAGTAGTGAGATGGACAACCACTCTGATGGAGAGGGGTACTCTGTAGACCAACAGAGAGAAGAAACAGCAGGAACCTAAAGTTAACTGTGAGAAGATTAAAGTCACAGGACTGTGCCCAGGGTTGTTTCTGAAGAGGATAGATGTGTCGAGTCTGCCTGTACTTTAGTTTCAATATAGATGCCAGACATCTGATGACATTTACAGTGAGGATAGGAGACTTGATGGGGAAGATGATTTTGCTGAACATGAGGACTGGGTTAAGGAGGAGATAAAATACAATAGCCAGTCTGAAGTAAAGGTTGAGATCGGGTCAGCCTCTGAGATGGGACAGTCTATTGACATGGCTAGAAATACTGAGAAGGTTGAGAGGGGTCAGCTAAGAAACATAGCAAATCAGATGCCTGTCTCTGGGAGGGCCAAGAGATGTGTATCTGCCCATCATCTCCTCGTCCAGCCCTAACACCGCTGAGAGAGACCCTCTCCTACCTGAAACGTAAAAACAAAAGATGACTGTGACATGCCTGACCCACCACCCCAGAATCAATAATACGGTTGTGGGCTGCCCTGAGTGTGGAAAGCAGTTCAGGGACAAGTGTAATCAGAAATCTTACGAGGACCCACACAGGTGAGACCACTTATACATGTATAGACTGCGGGGACGTCTGTTTTCAGCTGAAAGGGCAGCAACATCTACACAGAAAAAGGCCATTCCGCtgcagtgtgtgtgggagggCTTCCATCACAGCCACAACCTGACAAAACACAAGCTTCTTCACTCCCAGGCAAAGCCCTTCCTCTGTACCCGCTGTGGAAAGAGCTTTAACCTCAATGACAAGATGCTGAGGCATCTGAGGACGGTGCACAATGAAAGCATGCTCCCTTGGATGTGGGACAGCGGAAGGGCATCTTCCCCTAACCCTGCCTTGTTAATAATGCTTACATCTCAGATCCTTTCAACTGCTTTAGTCCCAAACCAGCTAACTAAATTACTCCATATGTTCAACAATAAACATTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005818 lncRNA upstream 22258 36763175 ~ 36777127 (+) True G883916
TU1005823 lncRNA upstream 23642 36772662 ~ 36775743 (+) True G883918
TU1005820 lncRNA upstream 31579 36755465 ~ 36767806 (+) False G883916
TU1005814 lncRNA upstream 40449 36755465 ~ 36758936 (+) False G883916
TU1005810 lncRNA upstream 48755 36750364 ~ 36750630 (+) True G883914
TU1005834 lncRNA downstream 775 36802360 ~ 36803622 (+) True G883929
TU1005868 lncRNA downstream 33884 36835469 ~ 36838082 (+) False G883959
TU1005870 lncRNA downstream 33884 36835469 ~ 36838082 (+) True G883959
TU1005889 lncRNA downstream 70050 36871635 ~ 36892281 (+) True G883976
TU1005902 lncRNA downstream 97052 36898637 ~ 36899051 (+) True G883989
XM_021618298.2 mRNA upstream 6306 36788460 ~ 36793079 (+) True LOC110533785
XR_005053648.1 mRNA upstream 85522 36711951 ~ 36713863 (+) True LOC110533781
LOC110533102 mRNA upstream 94936 36702718 ~ 36704449 (+) False LOC110533102
XM_021618293.2 mRNA upstream 100683 36683866 ~ 36698702 (+) False LOC110533779
XM_036990190.1 mRNA upstream 100683 36683866 ~ 36698702 (+) True LOC110533779
XM_021618306.2 mRNA downstream 75090 36876675 ~ 36878956 (+) True mrpl48
XM_021618316.2 mRNA downstream 130664 36932249 ~ 36955772 (+) True LOC110533794
XM_021618318.2 mRNA downstream 187067 36988652 ~ 36997229 (+) True diablob
XM_036990195.1 mRNA downstream 199355 37000940 ~ 37070420 (+) False nectin3b
XM_036990194.1 mRNA downstream 199357 37000942 ~ 37055598 (+) False nectin3b
TU1005301 other upstream 503838 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 1112812 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 1383147 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 1477584 35318500 ~ 35321801 (+) False mogat3b
TU1003914 other upstream 1477584 35318500 ~ 35321801 (+) True mogat3b
TU1005877 other downstream 48061 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 1953924 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 4910742 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 4910742 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 4910742 41712327 ~ 41717292 (+) True G889906

Expression Profile