RNA id: XM_021618304.2


Basic Information

Item Value
RNA id XM_021618304.2
length 2987
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110533787
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36802196 ~ 36806013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGCATGCGCACAGGACCTACTCCTTCTAACAGACTTGGCTGGAGAGGCTTGGGAATTCCCCAGGACATCTCCTTTCGCGAGACGACTTGACCTGTAAACAATTTAGCACGGTAACGTTAATATTTATTTTACTCCGTGAAAAACCATCAAAGATGAACTTTGATGATATCAGTTAGAGCTTAGATGCAGCGCCCTGTACTGTTTTCGTAGACTTGGTCCTCTAGCACCTTTAgcgtgctagctagctaactaactgctTGGACATCAGTTACCAGCTTGAAAGCACAGCTAGCCTGCTACATTGCTTTCGCAAACTGGTTACTAGAATCAATCGATTTTAACCAGCTGTTGCAAAATAGTCTTATAAAAAAcgaatagctagctagcaacagtaTTCGTGATGGCTGGTATTCAGCCCAGGTGCGATTTTGGAAAGCAGCATGCACGGCCTATGCTTGGCTTCGGGCTTGACAAACACGAAACTCTGGGTACTTCTGCACCGGATGATTGGTGCGACAGTGGGCTAGAATGTCTGAGTGGAACAGCGCTGAGCCTGGATGACTCCTTCAGCAATGAGACATCCAAAACCTGGGGGCCCAGGTCCCCTCCTCACACGGCCTCCTACCCCTCACTGGATGACACTGACAAGCACCCTATGGACTTTAGTTCACTGGGTGGTGGAGAGAGGTTGGACTCGGCTATAGGGGACTCAATTACAGATGAGACGGTGGGGAGTATATCACAGGGGCTGGGGACCATGCACCTGAATGAACCAGTTATCAGTTACACAGTCGACGACCGTGGGAGGCAAGCAGCACCGAGCCTGGAGGAGGAAAGACAAAGGAGAGACGAGATGCTCAACACACTGAACTTTGTGTCTGAGGATGGAGACACGGCTCTTCACTTGGCTCTTATCCACGAACACTGGGCCTTCGTACAATACTTACTGGGGGTGATCGCTCTGGACAGGAGCTGGGTGCCTTACCTGGACATCCAGAACCACTTGGGACAGACTGCCCTCCACCTGGCTGTCATAGTGGACCAGTCCCAGTGTGTGCGGGGGCTGCTGTGGGGCGGTGCGAGTGCTGAGctccaggagagaggagggaacacaCCACTGCACTTGGCTGTCAGGGAGCTGAGGCAGGACTGTGTACGAGAGATCACCTCCAACTGCCAGAACACCGACTATCTATACGTCACCAACTACTCGGGGGTGAGTGCACTGCATTTGGCAGTACAGAGGGGCAAGGAGGACATAATCAGCATGCTGATTGAGGCAGGAGCTGATGTTAACCAGAGGGACCCAGGCTCAGGCCGTTCCCCTCTCCATTGGGCCGTGGAGTCCCAGAGCCCcagggtggtgcagttgctgcTGCAGAGGGGAGCCAATGTAGACCAGCCCTCCTATGCAGGCCACACAGCCCTCTACTGCTCCCTGCACAGGCCCAACAAGGAGGTACAGGCCCTGCTCAAGGCTGGAGGGGCCTCTGACGCACAGGCCCAGGacgaagaggagagggagagtgaagagGAGTTTGATGACGTTGTTATCAATGGACAACGAGTGCACTAACCATGAACATGGAACCTGAGCCACATGGAGTCATGGCGCTGCTGTTGGGCTAAGCGATTGATGTGCAtcatgtgcatttgtgtgtgtgtggttcgtgtatgtatgtgtgcctgTAAATTGTATATAGCAAGGCTGCAGAGTAGGTAAAGTTCTCAACCCAGTCCGGACTTAAGTCATTCGATTTAATTGATCAGTTCCTGTGTCAATTTAGTTCCTTTACATTGTGCAGGGGGTAAGCTAATGTTAGTTGGGTCACATGGTTTTAGTGTTTGTCTGGAGCTTGCCAAGACTAGTGTTGCCTACCTTACGCATGGGAGAATGATCCAAACAAAAGCTGTGTTCTGTCAAACTATTTGCCAGTTTCACCACTACAGATTCCAACTTTAAAGCTGGAGTCCTTCATGTTGAAACTGCCACACCCGTTTGCGATATgacaacaaagaagttactgcaaacaatgAACTGTGTTTTTCTCTCGAACATGATTGGACGCGAGATAGAACAGCAGTGTATATAGTGCATTTATTTTTACCATGAGACCCAACGCTCCTCGGCTCTGcttcgtcaacaaaacaaaaacagccgTGGCGCAGTTTCCCCTACTGCGGATTCTATCTTTAAGGCTATAGATGAGAGATGTGGGTTTGGGACTAAAGCAGTTAGAAGGATCTGATATGTTACCATTATTAACAAGGCAGGGTTAGGGGAAGATGTGAATGTATATAAGGTAGAGAGAGGTTTATGCATGCCAAGGTAAGTAGTTAACAAGGGatgggaggagaaaagagaggggcaAACTCAACACATTGCTAAATCATCTTTGCCTCAAGTTGAAATAAATGATCGTTTAACGGCATTTGGGAACCTTTGCAAGTCTATATGAGTTGAGATTTTTTGACCTATCACATGGGTAGAGGGTAATGTGATGTGACAATTTCAATAATGAATCAGTTCCTGACTATGAGTGCTCTAACCAGGGCCTGACGACTATCCCTGGAATACCCTGGAGTGATGTCATTCAGTTCATTTGATGTATAGTTCACAAATTAAAGACAGAGCTACAAAAAGCAGACACGGAGACCCGCCAGAACAAGGGTTTAATCTGGTGTATATTCGCTTTCTGTATTTTTGACTTATTTTTGTATTCTTTTGAAAAAGGATTGACTGGTGATTTGACAGGCTAGGATGCCTCTGTATTTGCTCGTCAGCAGGAGCATGATGTCTACATGATTATTGTAATAAAAATGTATAGAGTATTGTTTATTTTCCCTGAACACTCATCAGTATGGATTCTGTATCAAAGTTGTAGCCAAGCTTTACTTCCATGCACAGCTTCGATACAGATACAGTTACAGCATCCGGGAGCCGAGGCTCCATaattatactgaataaaaatattaatgccaaa

Function

GO: NA

KEGG:

id description
K02581 NFKBIB; NF-kappa-B inhibitor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006363 lncRNA downstream 22470 36756002 ~ 36779726 (-) True G884398
TU1006388 lncRNA downstream 60153 36740710 ~ 36742043 (-) True G884423
TU1006382 lncRNA downstream 69247 36732718 ~ 36732949 (-) True G884417
TU1006375 lncRNA downstream 78655 36723296 ~ 36723541 (-) True G884410
TU1006374 lncRNA downstream 79291 36722551 ~ 36722905 (-) True G884409
TU1006501 lncRNA upstream 116153 36922166 ~ 36922366 (-) True G884519
TU1006524 lncRNA upstream 190479 36996492 ~ 36997565 (-) False G884542
TU1006525 lncRNA upstream 190479 36996492 ~ 37038509 (-) True G884542
TU1006646 lncRNA upstream 306138 37112151 ~ 37112932 (-) True G884653
TU1006602 lncRNA upstream 313642 37119655 ~ 37122677 (-) True sdhaf1
XM_021618301.2 mRNA downstream 2538 36796729 ~ 36799658 (-) True LOC110533786
XM_021618299.2 mRNA downstream 2816 36796729 ~ 36799380 (-) False LOC110533786
XM_021618302.2 mRNA downstream 2816 36796729 ~ 36799380 (-) False LOC110533786
XM_021618303.2 mRNA downstream 2839 36796729 ~ 36799357 (-) False LOC110533786
XM_021618296.2 mRNA downstream 16709 36780934 ~ 36785487 (-) True LOC110533783
XM_021618305.2 mRNA upstream 30406 36836419 ~ 36851211 (-) True LOC110533789
XM_021618307.2 mRNA upstream 49304 36855317 ~ 36876106 (-) False LOC110533791
XM_021618309.2 mRNA upstream 49304 36855317 ~ 36876108 (-) False LOC110533791
XR_005053651.1 mRNA upstream 49304 36855317 ~ 36876119 (-) False LOC110533791
XM_021618310.2 mRNA upstream 49304 36855317 ~ 36876120 (-) False LOC110533791
TU1006338 other downstream 136839 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 409669 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 411282 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 921245 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1203111 35598317 ~ 35599085 (-) True G882971
TU1006746 other upstream 510904 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 792620 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1432937 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2377685 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 2411300 39217313 ~ 39217738 (-) True G887329

Expression Profile