RNA id: XM_021618309.2


Basic Information

Item Value
RNA id XM_021618309.2
length 2671
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110533791
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36855317 ~ 36876229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTAACCCTACTGCTAGGCCAGAGCTTGATGGCCCCGAgtgcgaaacgctctgaatttatgaacggcACAGTCTAACATGCcactccagagtgaatttgcGAACATACCCGTAATTTACGCCACTGCATCGGAATGCCACAGTCGCTTTGGATTGGTGGAGCCTTGTGCCAGTCGTCGAACACATTAGGTCGTGACTAACATCCTCTGAAACAACTAGCTAACAGCGATGGAGTGGGAGTGCTGAGGTAGTTAGTTAGTCAGCGAGTCACAAACAAGTCAGCTGAGTGTTCAAGAAGCCAGTATCTACTAGCTAGTTATTTAGCTAGAAACTCACCGATTGCCAGTCAAGCCAAGAAATTGCAGTTTAGAAGCATTGCTGTTAGCTAGTTAGTTCTTACGGCACAACCCCCTGAACTTGTCAACTGGGCTGGCTAGCTAGTAGGGATTTAGCTAGCTCACTAAAGTAaggggtagtgtgtttttttctCCCCACACTGTGGGCCACAGTCTACAACTTGCCTTTGCCTGCCTAACAACATTGCAGTCATGTCCGCAGCAGGAGACTTCGGAAACCCTCTAAGGAAATTTAAATTGGTCTTTCTTGGCGAACAGAGCGTGGGGAAGACTTCATTGATTACCAGGTTCATGTACGACAGCTTCGACAACACCTACCAGGCCACAATAGGAATAGATTTCCTGTCAAAAACCATGTACCTCGAAGACCGAACAGTGAGGCTGCAGCTTTGGGACACAGCCGGCCAGGAGCGCTTCCGGAGTCTGATCCCTAGCTACATACGAGACTCCACCGTGGCCGTGGTAGTCTATGACATCACAAATGTCAACTCTTTCCAGCAAACCACAAAATGGATTGATGATGTCAGAACGGAGAGAGGAAGTGATGTCATCATCATGCTGGTGGGAAACAAGACGGACCTTGCAGACAAAAGACAGATAACCACAGAGGAAGGGGAACAGAGAGCCAAAGAGCTGAATGTTCTTTTTATTGAAACAAGTGCAAAGACAGGCTACAATGTCAAACAGCTGTTCCGACGTGTGGCTGCTGCCCTCCCTGGCATGGAGAGCACACAGGACAAGAGCAGAGAAGACATGATTGACATAAAGCTGGAGAAGACCCCAGAACAGCCCGTCAGCGAAGGAGGCTGCTCCTGCTAACTCCAGCCTCCGTTTATCACTCTCTCcatcactgtttctctctcctgcGCTTTGTTCTTGATCTTTCTCACCCTGGCTTATCGGCCTCTATACTGTACCtatcctctctgctctccctctgaaCCCCTTTTTTTCCTGACTCCTTCACCACAGCCTGAAAGAGAAGAACACTACCTGTCCGTCATCCTTGTCGTCATGGAATCCTGTCGTGGAATCGCTGAGATTACCTTAAGCTTAACAAGCAAAATGTGGATGTGAATGCTATTTTATTTCCGTTGAACTTTAACTCTACTTTGGCAATGAAAAAGGAAATGATTTATTGTTACATTTTTCAAGCACTGCGTCTTGTTTTTCTGTAATACGCCATGCAAGTGACTCGTTCTTACGTCCTACTTCCGTGTTCATGCCCCTGGTCTTTTACATGGGCCTACAGATATCAAATTAATTGAAACGCAGTTAAATATTACGCTTTGTGGATGGAACTACTTCTGCAGATGCCTTTTATGACATTTTTGACAATTGAAGACTATTTAAAAAAAGCCTAGAACAGTTAAAAAACGACAAGCCTACTTGCTGCGTCGCTTGCATGGGTATACTCTGGAAATGGTTGTTTGCACAGTAGTCAAAAATGATTGCAGCATGTGAGAAACAGACTTCAGAGTAATGGATAACTGAGTGGAATTGTTCTGCCATAAGTGGGCTTAGCAGCCCCCAAGAATATCACCCACTCGGTAAACGTTGAGCACACCAACCTTACCTGTTTACGCCGGTCCCACCACATAGCAGCTACAATGCCACTCCACCGAAGCATGGTATGACAACACAATGTAGGGAAACCACAAGaactcacacacagcatgatgacaCAATTCCCACCACAACGTGACGCAAAGGGCAGTTTCACTACCACAACACGACCGTCCTTCATTATTCACCTTGTCCTCACAAATTAATAAAAGGTATCTTCACCTTGGCTGCCATTTTCTATTATATCTCTTGGTTAGATCTTTACTTTTTTCTAAAAGTACAATTATTACCATAGATGAAACGATATTGCTTTGGAGAACGGTACTGTTTGCAAAATGATTTTTGTATATTGAGAAGTATCATATTCAACGCAAACCCAACTTCGTTAGATATGCTGACATGCCTTTTTAAGTGCTCATTGTAAGAGGGCTTCCATGGTTTTGGGATTTCCTAGCTTTGTTTGGTTTAATGTTATATCGACACTTTAGTTATTTTTTTTGATCTTTTGTTAATGAGAATTATCTTACATGTTCATTCAATCCACAATGACTTGTAATATTTATTTCGACTGGATCATGTTTCTTTTTTTATTACTGTTAATATGATCATTGTTGGGATGATCCCTAAATGACTAGAGTATTTTGTCAACCacctgatttttttttctccaaacatgtCCTCCAGCTCTTCGGGTGATGTCACTACCCCTCTACTCCACCCCAAAATGCTGATTTGATCAAACTGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006363 lncRNA downstream 75591 36756002 ~ 36779726 (-) True G884398
TU1006388 lncRNA downstream 113274 36740710 ~ 36742043 (-) True G884423
TU1006382 lncRNA downstream 122368 36732718 ~ 36732949 (-) True G884417
TU1006375 lncRNA downstream 131776 36723296 ~ 36723541 (-) True G884410
TU1006374 lncRNA downstream 132412 36722551 ~ 36722905 (-) True G884409
TU1006501 lncRNA upstream 46058 36922166 ~ 36922366 (-) True G884519
TU1006524 lncRNA upstream 120384 36996492 ~ 36997565 (-) False G884542
TU1006525 lncRNA upstream 120384 36996492 ~ 37038509 (-) True G884542
TU1006646 lncRNA upstream 236043 37112151 ~ 37112932 (-) True G884653
TU1006602 lncRNA upstream 243547 37119655 ~ 37122677 (-) True sdhaf1
XM_021618305.2 mRNA downstream 4106 36836419 ~ 36851211 (-) True LOC110533789
XM_021618304.2 mRNA downstream 49304 36802196 ~ 36806013 (-) True LOC110533787
XM_021618301.2 mRNA downstream 55659 36796729 ~ 36799658 (-) True LOC110533786
XM_021618299.2 mRNA downstream 55937 36796729 ~ 36799380 (-) False LOC110533786
XM_036989321.1 mRNA upstream 15843 36891951 ~ 36896174 (-) False ucp2a
NM_001124654.1 mRNA upstream 15849 36891957 ~ 36896038 (-) True ucp2a
XM_021618313.2 mRNA upstream 33036 36909144 ~ 36912467 (-) False LOC110533793
XM_021618315.2 mRNA upstream 33036 36909144 ~ 36912473 (-) False LOC110533793
XM_021618312.2 mRNA upstream 33036 36909144 ~ 36912477 (-) True LOC110533793
TU1006338 other downstream 189960 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 462790 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 464403 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 974366 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1256232 35598317 ~ 35599085 (-) True G882971
TU1006746 other upstream 440809 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 722525 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1362842 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2307590 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 2341205 39217313 ~ 39217738 (-) True G887329

Expression Profile