RNA id: XM_021618332.2


Basic Information

Item Value
RNA id XM_021618332.2
length 3108
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110533807
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37178008 ~ 37185014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCACCCAATCAGACTTGCTTGTATCTTATTTTCGACCAATACATTCAGTTGACAATGTGTAGGGGCCGGTACTTATACGTTCTCGGTTATTGAACCGCTACATTCAACAGTGGCGGCGGCTTCCAATCTTGTCAGGTATCGAAGAGAGGTGTACTCGTTCATACCAGAGACGCGATTTGACCTCATTGGATATATTTTATTTTACGAATTATAATGCACTCCAAGGTGTAGGAATTGGGTTCCGTTTTCGAGCACATCACCACAGGTCTGTGGACATTGCGACCAAAGCAGAGAGATGGAGGCGGGCTCAGTGGTGCAGGAGGACATTACATTCCGAGGAGTGGAGTTTGCTGTGAAGATAGAACTAAAAGAAGGATTGCTAATAGTTGAGATCTCTGATGCAATGACAGCTGACCAGTggaggggagggtttgacccagCATACATCGAAGACCTATCCCGCAAAACAGGCAACTTCAAGCAGTTTCCCATCTTCTGCAGCATGTTGGAATCTGCTGTTAGTAAGACTAGTGAGTCTGTTACCCTTGACCTTTTGACCTATGCTGACCTGGAGCTCTTGCGGAACCGGAAGGCTGGAGTTGTTGGTCGTCCCCGAGCCCAACAGCAATCTCCTAACCTCAGTGCCAAAAGATACCTAATTCTTATCTACACTGTGGAATTTGACAGAATCCACTACCCCCTGCCCCTGCCCTACCATGGCAAGCCTGACCCTGCCGCCCTGCAGAAGGAGATCAGAGCCCTGAAGACTGAGCTAAACGCCCTGGCCAACCATGTAGGTCACAAACCAGCAGAGCCAGAGATACGCCGGCTACGGGCAGAACTCACATTggtgagagaggagaaggaggcccTGGCCAAGACTTTGGAGCGTCTGCAGTTAGTGGGGTCTGCTTCCACCCCTGGAGGAGGGGCTCGGGGGCTGAGAGAGGTGGTCAGGAGTTTAGAGGACCAGCTCCTCAGAGAGAGGGCCAAGAGTCAGCACTCAGCCAGCAAGAGGGGCCAGGAGCAGCGCCTCCAACTGGAGCAGTTGGAGGAGCTAAGGGCATCAGAGCGAGCTCTACGGATTCGCGTTAAGAGTTTGACCAATGAACTGGCGTTGCTAAGACGAGGGTTAGTCAATCTAAGCATtAGGGTGACCAGTGGGGTGACCCCTGCCCTCTCTGGGTGCAGTGCCTCGCGGGGTGATGGGGAGATCAGGCGTTCACTGTCTCGGGAACGTAGTTTGGGACGTGTTGTAGTTCGGGCTCGCTCAGGGtccagagagaggacagaagagaggggTCGGAGGTCAGAAGGCCAGAGGGCAGACTCCTCAGGGCCCCGCTCGTATGTCTCCAGACCCTCACCTTCTCCCACAGGTTCGCGGACGCCACGCTTTGACCCCACTGCATATATCCAGGACAGACAGCGCCGACTGAGAGAGGCGGAACTCAAAAAccAGAGAAAGGTCAGAAGAGAAATGTTAGCGTCACCTGTTCTGGAGAGGGGCCTAGAGAGGGGGCGGTCTCGGTCCAGGGAGGCTTATCCCCAGCTGACCAGGGCAGGCAgtgggagcagagggaggagctTATCAATTGAGAGTAGGAGAAGCAGACAGTCCTCTGATAATTCATTGGTGGAGTTGGATGAGTTGACAATCAGAGGAAGGAAGCAGACCTACAATGGTCCAACCATGCCCAGAGGAAGACATTTGACCAAGAAGCCCCATTGTAGCACTCCCACACACAGGGTACGATCAGACAAAGAAGGCTCCATAGATGGGGCTGACCTGTCAGAGATCGATGCCCGGCTGCAGGCCCTACAGGACTACATGAGGGACCTGGACACGGGACACTAAACCCTAGGCAGGAAAAATGTGTTCAGACTTTCCTGTGCTGCAAACTTAGACCAAGGTCTACTACTAATCGACATTACTAGTCGAACACTGTGACTAAACAAGATCACTGCACTACACTGTGATATTTTAGCACACATTATCAGCTGATAGGCTTATGCAAGTGCAAACACAGATGGATGCACACACTGCTTATTTTGTCACCCTCTGGGAGACGGTGCCTGATCTGTGGATAAAGATACCACTGTGAAGGCTGTTAAGCCACTGTTAGTGTATTGAACTAAAACTGAGGAGTGACTGGTTTTATACTACGGTTTTATAACTTATGCATTGTGTCTGTTGATGTGACTGTAATACCCCATTTCCCCTACCCTTTTTTAACGAGTGATTGATGAATGTGATTTGAGATGTTTTAGTCTGTAAATATAACTTTATTTGAAACATTCTGGGGGGGTGGTTGCTTTTGGTGAGAAgtatatctttttttattttttatgtttttttaaaatataaatgaAATTTAGTTTCTCATTTAATTTTATTGAAGAAATGTCGTCCCATGCTCTATTATCATTACTTCCTGTCTAGCTGTGTttgctgagtgtctgtctgttcaAGTGTTTTGGCCCATTGGATCAGAGATGGATTTACACCAAGTGCTGCATGAGGATTTATTGCTTTGTTTTTGTGCCATTACTTTTCTAATAGGTATTTAGCCAAaatctttattttttttctactttTACTAGACATATCTTCTCTATTAATAATCACTGCAGCAGCTTTGTCGCTCAGTAATGTGGTGTGAGTGAGTGCACTGTGTCCTCCCCCTCTGCAGTAGAGTTAGTTGGTTGGGTGGGCTGAAGGTTCTTCCCTAGGGCTTTACTTAAAGGGCTGCAGCTCCACTACAGCTGACCGAGTCACATTAATTAATAGCTAACCTACCGGCCTGGACCCTTCCTCTCCGGGGTGAGCAACTGGGCCGCATGAACAGCTGCTTCCATCTGCACTACTGTAGGAGGATGAGAATAGTGGAGGGAGCGGAGAGGCTTTTTGTGCTGTTTTTAGATTTGACCTCAGCTGCTAATAAAATGTAAGATGCTTTCCACTTAACCAAAACACCATCTATCAGAATTAAAGCCAGGCACCAGAGGCTGAAATTAAATGTACCTATCAGTTTTGGGATCTGTTGGTATTTTGTTACATTAATATTAGTATTtccaaaatgtaataaaaaaaaaaaaaacgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006602 lncRNA downstream 55331 37119655 ~ 37122677 (-) True sdhaf1
TU1006646 lncRNA downstream 65076 37112151 ~ 37112932 (-) True G884653
TU1006525 lncRNA downstream 139499 36996492 ~ 37038509 (-) True G884542
TU1006524 lncRNA downstream 180443 36996492 ~ 36997565 (-) False G884542
TU1006501 lncRNA downstream 255642 36922166 ~ 36922366 (-) True G884519
TU1006711 lncRNA upstream 70873 37255887 ~ 37256086 (-) True G884705
TU1006727 lncRNA upstream 108258 37293272 ~ 37293563 (-) True G884719
TU1006733 lncRNA upstream 115758 37300772 ~ 37301123 (-) True G884725
TU1006738 lncRNA upstream 121150 37306164 ~ 37306394 (-) True G884728
TU1006745 lncRNA upstream 134785 37319799 ~ 37320543 (-) True G884735
XM_036990204.1 mRNA downstream 1208 37157662 ~ 37176800 (-) True itpkca
XM_036990205.1 mRNA downstream 1215 37157662 ~ 37176793 (-) False itpkca
XM_021618325.2 mRNA downstream 26785 37142906 ~ 37151223 (-) True LOC110533803
XM_036990201.1 mRNA downstream 28676 37142906 ~ 37149332 (-) False LOC110533803
XM_021618329.2 mRNA downstream 43011 37127635 ~ 37134997 (-) False qpctlb
XM_021618335.2 mRNA upstream 8099 37193113 ~ 37195456 (-) True LOC110533808
XM_021618336.2 mRNA upstream 17080 37202094 ~ 37248453 (-) False LOC110533809
XM_036990206.1 mRNA upstream 17080 37202094 ~ 37248453 (-) True LOC110533809
LOC110533810 mRNA upstream 58478 37243492 ~ 37244284 (-) True LOC110533810
XM_021618341.2 mRNA upstream 163458 37348472 ~ 37351594 (-) True chmp1b
TU1006338 other downstream 512651 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 785481 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 787094 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 1297057 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1578923 35598317 ~ 35599085 (-) True G882971
TU1006746 other upstream 131903 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 413619 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1053936 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 1998684 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 2032299 39217313 ~ 39217738 (-) True G887329

Expression Profile